ANGIS -- Australian National Genomic Information Service
BLOCKS -- database of conserved regions in protein sequences
Cloning Vector Collection, National Institute of Genetics
Codon Usage Database
Comprehensive Microbial Resource -- Microbial genomic sequences and searches
GeneCensus -- Hierarchical organization of sequence information
GeneQuiz: Automated analysis of complete genomes of yeast, Methanococcus jannaschii, Haemophilus influenzae, Mycoplasma genitalium, and other organisms
Genome Catalog
Genome Database (GDB) -- Official central repository for Human Genome Initiative genomic mapping data
GENSCAN -- Identification of exons, introns, promoter and polyadenylation signals, in genomic sequences
Homologene -- Homology utility that searches curated and calculated orthologs and homologs for genes represented in UniGene and LocusLink for human, mouse, rat, and zebrafish
Human Gene Mutation Database -- searchable human gene mutations
Human SNP Database -- 2227 mapped single nucleotide polymporhisms (SNPs), 3358 Total SNPs
Human Transcript Database -- collection of human RNA molecules that have been sequenced
Influenza Sequence Database
KABAT -- Database of sequence of genes of proteins of immunological interest
Mitochondrial DNA Concordance
Molecular Probe Database
MGI (Mouse Genome Informatics)
NCCB Vector Database
Nucleic Acid Database (NDB) -- Database of structure information about nucleic acids.
Online Mendelian Inheritance in Man (OMIM) -- A database of human genes and genetic disorders that contains textual information and references
OWL -- Non-redundant composite protein database of 4 publicly-available primary sources: SWISS-PROT, PIR (1-3), GenBank (translation), and NRL-3D
P450 -- Proteins database
PDB at a Glance -- classification of the current release of the Brookhaven Protein Databank (PDB) with links to relevant data.
Pfam -- database of multiple protein sequence alignments and hidden Markov models covering many common protein domains
Plasmid Data Bank
PRINTS -- Database of conserved motifs used to characterize a protein family
Project Ensembl -- Joint project of the European Bioinformatics Institute and the Sanger Center that aims to provide "complete and consistent annotation across the human genome."
PRODOM -- Database of protein domains
PROSITE -- Database of protein families and domains
REBASE: The Restriction Enzyme Database
Ribosomal Database Project
RNA Modification Database
RNABase -- RNA Structure Database
Saccharomyces cerevisiae promoter database -- Database of promoters of 6,000 genes in yeast genome
Saccharomyces genome database (Stanford)
SpliceDB -- canonical and non-canonical splice site sequences in mammalian genes
Translate EMBL (TrEMBL) -- database of all translations of EMBL nucleotide sequence entries not yet integrated in SWISS-PROT
UniGene -- Human DNA sequences by chromosome
U-RNA Database
V-Base -- human germline V sequences
Viral Databases Online
WIT -- Metabolic models of organisms from sequence, biochemical, and phenotypic data
