Science Functional Genomics Resources: Proteomics

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Proteomics

features
centers
organisms
sequence
expression
proteins
proteomics
epigenetics
medicine
maps

General Resources/Links
Protein-Protein Interactions
Analyses
Protein Families

General Resources/Links

Proteomics Tools (ExPASy)
Biologist's Control Panel
Aventis R&T Proteomics
Graffinity Chemical Proteomics
Harvard Institute of Proteomics
Harvard Microchemistry and Proteomics Analysis Facility
Human Proteomics Initiative
Protein Characterization and Proteomics Laboratory
Proteomics Protocol
Proteomics (Weizmann Institute)
SLRI Bioinformatics
University of Aberdeen Protein Lab and Proteomics Facility

Protein-Protein Interactions

Database of Interacting Proteins -- A database of pairs of proteins known to interact with each other

Interact -- Object-oriented database of protein-protein interactions

Pronet Online -- Industrial-scale two-hybrid analysis for studying protein interactions

Analyses

BioInformatics Molecular Analysis Section (BIMAS)

Bioinformatics & Pattern Discovery Group of IBM Computational Biology Center: Site features a number of tools useful for protein comparison and analysis, including Teiresias, a sequence patern discovery algorithm; Musca, a tool for teasing out multiple sequence alignments; and a protein-annotation engine.

NCI Flicker Web Server

Protein Hydrophilicity/Hydrophobicity Search and Comparison Server

Protein Prospector

Protein Sequence Analysis

WIT (What Is There?)

Protein Families

AAA, ATPases associated with cellular activites
Aldehyde dehydrogenases
AARS, Aminoacyl-tRNA synthetases
CBS domain
Chaperonins
dbCFC, the Cytokine Family cDNA Database
Cytochrome P450 Family
Chromo shadow domain
EF-hand Calcium Binding Proteins
Esterases and Alpha/Beta Hydrolases
FYVE Finger Zinc Binding Domain
GPCRDB [aka 7TM] and GRAP the mutant database
Globin Gene server
Glucoamylases
Glycosyltransferases
Histones
IMGT - ImMunoGeneTics database
Integrins
Kinesins
MADS Box Gene
Metallothioneins
Myosin
Nuclear Receptor Resource
- Glucocorticoid Receptors
- Thyroid Hormone Receptors
- PPARR, the Peroxisome Profilerator-Activated Receptor Resource
- SRARR, the Steroid Receptor Associated Protein Resource
Pentapeptide repeat
Peptaibols
PHD-finger
Protein Kinase Resource
SAND domain
SANT domain
Wnt and Frizzled

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