Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
THE RICE GENOME: Opening the Door to Comparative Plant Biology
Jeffrey Bennetzen
In this Perspective, Bennetzen takes a close look at the two draft sequences of the rice genome (Yu et al., Goff et al.) and discusses revelations about gene number and organization.
The author is in the Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA. E-mail: maize{at}bilbo.bio.purdue.edu
The editors suggest the following Related Resources on Science sites:
In Science Magazine
LETTERS
Robert M. Goodman, Rosamund Naylor, Hailu Tefera, Rebecca Nelson, and Walter Falcon (7 June 2002) Science296 (5574), 1801b.
[DOI: 10.1126/science.296.5574.1801b] |Full Text »
EDITORIAL
Donald Kennedy (5 April 2002) Science296 (5565), 13.
[DOI: 10.1126/science.296.5565.13] |Summary »|PDF »
NEWS FOCUS
Dennis Normile (5 April 2002) Science296 (5565), 36.
[DOI: 10.1126/science.296.5565.36] |Summary »|Full Text »|PDF »
LETTERS
Jan Leach, Susan McCouch, Tom Slezak, Takuji Sasaki, and Sue Wessler (5 April 2002) Science296 (5565), 45b.
[DOI: 10.1126/science.296.5565.45b] |Full Text »
LETTERS
Stephen A. Goff (5 April 2002) Science296 (5565), 45c.
[DOI: 10.1126/science.296.5565.45c] |Full Text »
PERSPECTIVES
Ronald P. Cantrell and Timothy G. Reeves (5 April 2002) Science296 (5565), 53.
[DOI: 10.1126/science.1070721] |Summary »|Full Text »|PDF »
PERSPECTIVES
Ismail Serageldin (5 April 2002) Science296 (5565), 54.
[DOI: 10.1126/science.1072035] |Summary »|Full Text »|PDF »
PERSPECTIVES
Pamela Ronald and Hei Leung (5 April 2002) Science296 (5565), 58.
[DOI: 10.1126/science.1071337] |Summary »|Full Text »|PDF »
RESEARCH ARTICLES
Jun Yu, Songnian Hu, Jun Wang, Gane Ka-Shu Wong, Songgang Li, Bin Liu, Yajun Deng, Li Dai, Yan Zhou, Xiuqing Zhang, Mengliang Cao, Jing Liu, Jiandong Sun, Jiabin Tang, Yanjiong Chen, Xiaobing Huang, Wei Lin, Chen Ye, Wei Tong, Lijuan Cong, Jianing Geng, Yujun Han, Lin Li, Wei Li, Guangqiang Hu, Xiangang Huang, Wenjie Li, Jian Li, Zhanwei Liu, Long Li, Jianping Liu, Qiuhui Qi, Jinsong Liu, Li Li, Tao Li, Xuegang Wang, Hong Lu, Tingting Wu, Miao Zhu, Peixiang Ni, Hua Han, Wei Dong, Xiaoyu Ren, Xiaoli Feng, Peng Cui, Xianran Li, Hao Wang, Xin Xu, Wenxue Zhai, Zhao Xu, Jinsong Zhang, Sijie He, Jianguo Zhang, Jichen Xu, Kunlin Zhang, Xianwu Zheng, Jianhai Dong, Wanyong Zeng, Lin Tao, Jia Ye, Jun Tan, Xide Ren, Xuewei Chen, Jun He, Daofeng Liu, Wei Tian, Chaoguang Tian, Hongai Xia, Qiyu Bao, Gang Li, Hui Gao, Ting Cao, Juan Wang, Wenming Zhao, Ping Li, Wei Chen, Xudong Wang, Yong Zhang, Jianfei Hu, Jing Wang, Song Liu, Jian Yang, Guangyu Zhang, Yuqing Xiong, Zhijie Li, Long Mao, Chengshu Zhou, Zhen Zhu, Runsheng Chen, Bailin Hao, Weimou Zheng, Shouyi Chen, Wei Guo, Guojie Li, Siqi Liu, Ming Tao, Jian Wang, Lihuang Zhu, Longping Yuan, and Huanming Yang (5 April 2002) Science296 (5565), 79.
[DOI: 10.1126/science.1068037] |Abstract »|Full Text »|PDF »|Supplemental Data »
RESEARCH ARTICLES
Stephen A. Goff, Darrell Ricke, Tien-Hung Lan, Gernot Presting, Ronglin Wang, Molly Dunn, Jane Glazebrook, Allen Sessions, Paul Oeller, Hemant Varma, David Hadley, Don Hutchison, Chris Martin, Fumiaki Katagiri, B. Markus Lange, Todd Moughamer, Yu Xia, Paul Budworth, Jingping Zhong, Trini Miguel, Uta Paszkowski, Shiping Zhang, Michelle Colbert, Wei-lin Sun, Lili Chen, Bret Cooper, Sylvia Park, Todd Charles Wood, Long Mao, Peter Quail, Rod Wing, Ralph Dean, Yeisoo Yu, Andrey Zharkikh, Richard Shen, Sudhir Sahasrabudhe, Alun Thomas, Rob Cannings, Alexander Gutin, Dmitry Pruss, Julia Reid, Sean Tavtigian, Jeff Mitchell, Glenn Eldredge, Terri Scholl, Rose Mary Miller, Satish Bhatnagar, Nils Adey, Todd Rubano, Nadeem Tusneem, Rosann Robinson, Jane Feldhaus, Teresita Macalma, Arnold Oliphant, and Steven Briggs (5 April 2002) Science296 (5565), 92.
[DOI: 10.1126/science.1068275] |Abstract »|Full Text »|PDF »|Supplemental Data »
Dynamics and Differential Proliferation of Transposable Elements During the Evolution of the B and A Genomes of Wheat.
M. Charles, H. Belcram, J. Just, C. Huneau, A. Viollet, A. Couloux, B. Segurens, M. Carter, V. Huteau, O. Coriton, et al. (2008)
Genetics
180, 1071-1086
|Abstract »|Full Text »|PDF »
Morphological and molecular phylogenetic context of the angiosperms: contrasting the 'top-down' and 'bottom-up' approaches used to infer the likely characteristics of the first flowers.
R. M. Bateman, J. Hilton, and P. J. Rudall (2006)
J. Exp. Bot.
57, 3471-3503
|Abstract »|Full Text »|PDF »
Genome Size Variation in the Genus Carthamus (Asteraceae, Cardueae): Systematic Implications and Additive Changes During Allopolyploidization.
T. GARNATJE, S.ÒN. GARCIA, R. VILATERSANA, and J. VALLES (2006)
Ann. Bot.
97, 461-467
|Abstract »|Full Text »|PDF »
Contributions of Domesticated Plant Studies to our Understanding of Plant Evolution.
A microarray analysis of the rice transcriptome and its comparison to Arabidopsis.
L. Ma, C. Chen, X. Liu, Y. Jiao, N. Su, L. Li, X. Wang, M. Cao, N. Sun, X. Zhang, et al. (2005)
Genome Res.
15, 1274-1283
|Abstract »|Full Text »|PDF »
Comparative Plant Genomics. Frontiers and Prospects.
A. L. Caicedo and M. D. Purugganan (2005)
Plant Physiology
138, 545-547
|Full Text »|PDF »
Mechanisms of Recent Genome Size Variation in Flowering Plants.
Chromosome Bin Map of Expressed Sequence Tags in Homoeologous Group 1 of Hexaploid Wheat and Homoeology With Rice and Arabidopsis.
J. H. Peng, H. Zadeh, G. R. Lazo, J. P. Gustafson, S. Chao, O. D. Anderson, L. L. Qi, B. Echalier, B. S. Gill, M. Dilbirligi, et al. (2004)
Genetics
168, 609-623
|Abstract »|Full Text »|PDF »
A Chromosome Bin Map of 2148 Expressed Sequence Tag Loci of Wheat Homoeologous Group 7.
K. G. Hossain, V. Kalavacharla, G. R. Lazo, J. Hegstad, M. J. Wentz, P. M. A. Kianian, K. Simons, S. Gehlhar, J. L. Rust, R. R. Syamala, et al. (2004)
Genetics
168, 687-699
|Abstract »|Full Text »|PDF »
Evolutionary Dynamics of the DNA-Binding Domains in Putative R2R3-MYB Genes Identified from Rice Subspecies indica and japonica Genomes.
Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana.
M. Kirst, A. F. Johnson, C. Baucom, E. Ulrich, K. Hubbard, R. Staggs, C. Paule, E. Retzel, R. Whetten, and R. Sederoff (2003)
PNAS
100, 7383-7388
|Abstract »|Full Text »|PDF »
The Automatic Detection of Homologous Regions (ADHoRe) and Its Application to Microcolinearity Between Arabidopsis and Rice.
K. Vandepoele, Y. Saeys, C. Simillion, J. Raes, and Y. Van de Peer (2002)
Genome Res.
12, 1792-1801
|Abstract »|Full Text »|PDF »