Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 28 March 2008: Vol. 319. no. 5871, pp. 1787 - 1789 DOI: 10.1126/science.1155472
|
|
Perspective
The Eukaryotic Genome as an RNA Machine
Paulo P. Amaral,
Marcel E. Dinger,
Tim R. Mercer,
John S. Mattick*
The past few years have revealed that the genomes of all studied eukaryotes are almost entirely transcribed, generating an enormous number of non–protein-coding RNAs (ncRNAs). In parallel, it is increasingly evident that many of these RNAs have regulatory functions. Here, we highlight recent advances that illustrate the diversity of ncRNA control of genome dynamics, cell biology, and developmental programming.
Institute for Molecular Bioscience, University of Queensland, St. Lucia QLD 4072, Australia.
* To whom correspondence should be addressed. E-mail: j.mattick{at}imb.uq.edu.au
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications.
- M. E. Dinger, P. P. Amaral, T. R. Mercer, and J. S. Mattick (2009)
Brief Funct Genomic Proteomic
8, 407-423
| Abstract »
| Full Text »
| PDF »
- Establishing legitimacy and function in the new transcriptome.
- H. van Bakel and T. R. Hughes (2009)
Brief Funct Genomic Proteomic
8, 424-436
| Abstract »
| Full Text »
| PDF »
- Complex architecture and regulated expression of the Sox2ot locus during vertebrate development.
- P. P. Amaral, C. Neyt, S. J. Wilkins, M. E. Askarian-Amiri, S. M. Sunkin, A. C. Perkins, and J. S. Mattick (2009)
RNA
15, 2013-2027
| Abstract »
| Full Text »
| PDF »
- Sequence-non-specific effects of RNA interference triggers and microRNA regulators.
- M. Olejniczak, P. Galka, and W. J. Krzyzosiak (2009)
Nucleic Acids Res.
| Abstract »
| Full Text »
| PDF »
- Functional Analysis of the Chromosome 9p21.3 Coronary Artery Disease Risk Locus.
- O. Jarinova, A. F.R. Stewart, R. Roberts, G. Wells, P. Lau, T. Naing, C. Buerki, B. W. McLean, R. C. Cook, J. S. Parker, et al. (2009)
Arterioscler Thromb Vasc Biol
29, 1671-1677
| Abstract »
| Full Text »
| PDF »
- Estradiol-regulated microRNAs control estradiol response in breast cancer cells.
- P. Bhat-Nakshatri, G. Wang, N. R. Collins, M. J. Thomson, T. R. Geistlinger, J. S. Carroll, M. Brown, S. Hammond, E. F. Srour, Y. Liu, et al. (2009)
Nucleic Acids Res.
37, 4850-4861
| Abstract »
| Full Text »
| PDF »
- Conserved introns reveal novel transcripts in Drosophila melanogaster.
- M. Hiller, S. Findeiss, S. Lein, M. Marz, C. Nickel, D. Rose, C. Schulz, R. Backofen, S. J. Prohaska, G. Reuter, et al. (2009)
Genome Res.
19, 1289-1300
| Abstract »
| Full Text »
| PDF »
- Small regulatory RNAs in neurodevelopmental disorders.
- S. Chang, S. Wen, D. Chen, and P. Jin (2009)
Hum. Mol. Genet.
18, R18-R26
| Abstract »
| Full Text »
| PDF »
- EZH2 is a mediator of EWS/FLI1 driven tumor growth and metastasis blocking endothelial and neuro-ectodermal differentiation.
- G. H. S. Richter, S. Plehm, A. Fasan, S. Rossler, R. Unland, I. M. Bennani-Baiti, M. Hotfilder, D. Lowel, I. von Luettichau, I. Mossbrugger, et al. (2009)
PNAS
106, 5324-5329
| Abstract »
| Full Text »
| PDF »
- Darwinian evolution in the light of genomics.
- E. V. Koonin (2009)
Nucleic Acids Res.
37, 1011-1034
| Abstract »
| Full Text »
| PDF »
- MEN{varepsilon}/{beta} noncoding RNAs are essential for structural integrity of nuclear paraspeckles.
- Y. T. F. Sasaki, T. Ideue, M. Sano, T. Mituyama, and T. Hirose (2009)
PNAS
106, 2525-2530
| Abstract »
| Full Text »
| PDF »
- The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA.
- C. P. Keating, M. K. Hill, D. J. Hawkes, R. P. Smyth, C. Isel, S.-Y. Le, A. C. Palmenberg, J. A. Marshall, R. Marquet, G. J. Nabel, et al. (2009)
Nucleic Acids Res.
37, 945-956
| Abstract »
| Full Text »
| PDF »
- NRED: a database of long noncoding RNA expression.
- M. E. Dinger, K. C. Pang, T. R. Mercer, M. L. Crowe, S. M. Grimmond, and J. S. Mattick (2009)
Nucleic Acids Res.
37, D122-D126
| Abstract »
| Full Text »
| PDF »
- A rugged free energy landscape separates multiple functional RNA folds throughout denaturation.
- M. A. Ditzler, D. Rueda, J. Mo, K. Hakansson, and N. G. Walter (2008)
Nucleic Acids Res.
36, 7088-7099
| Abstract »
| Full Text »
| PDF »
- Mapping Key Features of Transcriptional Regulatory Circuitry in Embryonic Stem Cells.
- M.F. Cole and R.A. Young (2008)
Cold Spring Harb Symp Quant Biol
| Abstract »
| PDF »
- Noncoding RNAs in Long-Term Memory Formation.
- T. R. Mercer, M. E. Dinger, J. Mariani, K. S. Kosik, M. F. Mehler, and J. S. Mattick (2008)
Neuroscientist
14, 434-445
| Abstract »
| PDF »
- MicroRNAs: components of an integrated system controlling cardiac development, physiology, and disease pathogenesis.
- G. Condorelli and S. Dimmeler (2008)
Cardiovasc Res
79, 551-552
| Full Text »
| PDF »
- Tilting at Quixotic Trait Loci (QTL): An Evolutionary Perspective on Genetic Causation.
- K. M. Weiss (2008)
Genetics
179, 1741-1756
| Abstract »
| Full Text »
| PDF »
|
|