Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Originally published in Science Express on 7 September 2006
Science 29 September 2006:
Vol. 313. no. 5795, pp. 1935 - 1942
DOI: 10.1126/science.1131127

Research Articles

Structure of the 70S Ribosome Complexed with mRNA and tRNA

Maria Selmer,* Christine M. Dunham,* Frank V. Murphy, IV, Albert Weixlbaumer, Sabine Petry, Ann C. Kelley, John R. Weir, V. Ramakrishnan{dagger}

The crystal structure of the bacterial 70S ribosome refined to 2.8 angstrom resolution reveals atomic details of its interactions with messenger RNA (mRNA) and transfer RNA (tRNA). A metal ion stabilizes a kink in the mRNA that demarcates the boundary between A and P sites, which is potentially important to prevent slippage of mRNA. Metal ions also stabilize the intersubunit interface. The interactions of E-site tRNA with the 50S subunit have both similarities and differences compared to those in the archaeal ribosome. The structure also rationalizes much biochemical and genetic data on translation.

MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK.

* These authors contributed equally to this work.

{dagger} To whom correspondence should be addressed. E-mail: ramak{at}mrc-lmb.cam.ac.uk

Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
RNA structure-based ribosome recruitment: Lessons from the Dicistroviridae intergenic region IRESes.
J. S. Pfingsten and J. S. Kieft (2008)
RNA 14, 1255-1263
   Abstract »    Full Text »    PDF »
Perturbation of the tRNA Tertiary Core Differentially Affects Specific Steps of the Elongation Cycle.
D. Pan, C.-M. Zhang, S. Kirillov, Y.-M. Hou, and B. S. Cooperman (2008)
J. Biol. Chem. 283, 18431-18440
   Abstract »    Full Text »    PDF »
Analysis of genomic tRNA sets from Bacteria, Archaea, and Eukarya points to anticodon-codon hydrogen bonds as a major determinant of tRNA compositional variations.
I. Targanski and V. Cherkasova (2008)
RNA 14, 1095-1109
   Abstract »    Full Text »    PDF »
Ribosomal RNAs are tolerant toward genetic insertions: evolutionary origin of the expansion segments.
T. Yokoyama and T. Suzuki (2008)
Nucleic Acids Res. 36, 3539-3551
   Abstract »    Full Text »    PDF »
A new kinetic model reveals the synergistic effect of E-, P- and A-sites on +1 ribosomal frameshifting.
P.-Y. Liao, P. Gupta, A. N. Petrov, J. D. Dinman, and K. H. Lee (2008)
Nucleic Acids Res. 36, 2619-2629
   Abstract »    Full Text »    PDF »
The bacterial and mitochondrial ribosomal A-site molecular switches possess different conformational substates.
J. Kondo and E. Westhof (2008)
Nucleic Acids Res. 36, 2654-2666
   Abstract »    Full Text »    PDF »
Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping.
J. Esguerra, J. Warringer, and A. Blomberg (2008)
RNA 14, 649-656
   Abstract »    Full Text »    PDF »
pH-dependent structural changes of helix 69 from Escherichia coli 23S ribosomal RNA.
S. C. Abeysirigunawardena and C. S. Chow (2008)
RNA 14, 782-792
   Abstract »    Full Text »    PDF »
Ribosomal proteins promote leaf adaxial identity.
Y. Yao, Q. Ling, H. Wang, and H. Huang (2008)
Development 135, 1325-1334
   Abstract »    Full Text »    PDF »
The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site.
A. B. Taylor, B. Meyer, B. Z. Leal, P. Kotter, V. Schirf, B. Demeler, P. J. Hart, K.-D. Entian, and J. Wohnert (2008)
Nucleic Acids Res. 36, 1542-1554
   Abstract »    Full Text »    PDF »
The solution structure of ribosomal protein S17E from Methanobacterium thermoautotrophicum: A structural homolog of the FF domain.
B. Wu, A. Yee, Y. J. Huang, T. A. Ramelot, J. R. Cort, A. Semesi, J.-W. Jung, W. Lee, G. T. Montelione, M. A. Kennedy, et al. (2008)
Protein Sci. 17, 583-588
   Abstract »    Full Text »    PDF »
Interactions of an Essential Bacillus subtilis GTPase, YsxC, with Ribosomes.
C. Wicker-Planquart, A.-E. Foucher, M. Louwagie, R. A. Britton, and J.-M. Jault (2008)
J. Bacteriol. 190, 681-690
   Abstract »    Full Text »    PDF »
Cross-crystal averaging reveals that the structure of the peptidyl-transferase center is the same in the 70S ribosome and the 50S subunit.
M. Simonovic and T. A. Steitz (2008)
PNAS 105, 500-505
   Abstract »    Full Text »    PDF »
The 3D rRNA modification maps database: with interactive tools for ribosome analysis.
D. Piekna-Przybylska, W. A. Decatur, and M. J. Fournier (2008)
Nucleic Acids Res. 36, D178-D183
   Abstract »    Full Text »    PDF »
STITCH: interaction networks of chemicals and proteins.
M. Kuhn, C. von Mering, M. Campillos, L. J. Jensen, and P. Bork (2008)
Nucleic Acids Res. 36, D684-D688
   Abstract »    Full Text »    PDF »
The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA.
S.-M. Toh, L. Xiong, T. Bae, and A. S. Mankin (2008)
RNA 14, 98-106
   Abstract »    Full Text »    PDF »
A novel chromatography system to isolate active ribosomes from pathogenic bacteria.
B. A. Maguire, L. M. Wondrack, L. G. Contillo, and Z. Xu (2008)
RNA 14, 188-195
   Abstract »    Full Text »    PDF »
Inaugural Article: The process of mRNA-tRNA translocation.
J. Frank, H. Gao, J. Sengupta, N. Gao, and D. J. Taylor (2007)
PNAS 104, 19671-19678
   Abstract »    Full Text »    PDF »
Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins.
M. R. Sharma, D. N. Wilson, P. P. Datta, C. Barat, F. Schluenzen, P. Fucini, and R. K. Agrawal (2007)
PNAS 104, 19315-19320
   Abstract »    Full Text »    PDF »
Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation.
D. Qin, N. M. Abdi, and K. Fredrick (2007)
RNA 13, 2348-2355
   Abstract »    Full Text »    PDF »
Conformations of Flanking Bases in HIV-1 RNA DIS Kissing Complexes Studied by Molecular Dynamics.
K. Reblova, E. Fadrna, J. Sarzynska, T. Kulinski, P. Kulhanek, E. Ennifar, J. Koca, and J. Sponer (2007)
Biophys. J. 93, 3932-3949
   Abstract »    Full Text »    PDF »
Three Binding Sites for Stalk Protein Dimers Are Generally Present in Ribosomes from Archaeal Organism.
Y. Maki, T. Hashimoto, M. Zhou, T. Naganuma, J. Ohta, T. Nomura, C. V. Robinson, and T. Uchiumi (2007)
J. Biol. Chem. 282, 32827-32833
   Abstract »    Full Text »    PDF »
Substitution of the use of radioactivity by fluorescence for biochemical studies of RNA.
B.-W. Ying, D. Fourmy, and S. Yoshizawa (2007)
RNA 13, 2042-2050
   Abstract »    Full Text »    PDF »
RluD, a highly conserved pseudouridine synthase, modifies 50S subunits more specifically and efficiently than free 23S rRNA.
P. P. Vaidyanathan, M. P. Deutscher, and A. Malhotra (2007)
RNA 13, 1868-1876
   Abstract »    Full Text »    PDF »
Saturation mutagenesis of a +1 programmed frameshift-inducing mRNA sequence derived from a yeast retrotransposon.
C. Guarraia, L. Norris, A. Raman, and P. J. Farabaugh (2007)
RNA 13, 1940-1947
   Abstract »    Full Text »    PDF »
Interactions and dynamics of the Shine Dalgarno helix in the 70S ribosome.
A. Korostelev, S. Trakhanov, H. Asahara, M. Laurberg, L. Lancaster, and H. F. Noller (2007)
PNAS 104, 16840-16843
   Abstract »    Full Text »    PDF »
Transfer RNA in the hybrid P/E state: Correlating molecular dynamics simulations with cryo-EM data.
W. Li and J. Frank (2007)
PNAS 104, 16540-16545
   Abstract »    Full Text »    PDF »
Mutations in Residues Involved in Zinc Binding in the Catalytic Site of Escherichia coli Threonyl-tRNA Synthetase Confer a Dominant Lethal Phenotype.
J. Caillet, M. Graffe, F. Eyermann, P. Romby, and M. Springer (2007)
J. Bacteriol. 189, 6839-6848
   Abstract »    Full Text »    PDF »
Ribosome Biogenesis and the Translation Process in Escherichia coli.
M. Kaczanowska and M. Ryden-Aulin (2007)
Microbiol. Mol. Biol. Rev. 71, 477-494
   Abstract »    Full Text »    PDF »
Fluorescent labeling of tRNAs for dynamics experiments.
T. Betteridge, H. Liu, H. Gamper, S. Kirillov, B. S. Cooperman, and Y.-M. Hou (2007)
RNA 13, 1594-1601
   Abstract »    Full Text »    PDF »
Genetic analysis of the E site during RF2 programmed frameshifting.
C. L. Sanders and J. F. Curran (2007)
RNA 13, 1483-1491
   Abstract »    Full Text »    PDF »
The three transfer RNAs occupying the A, P and E sites on the ribosome are involved in viral programmed -1 ribosomal frameshift.
M. Leger, D. Dulude, S. V. Steinberg, and L. Brakier-Gingras (2007)
Nucleic Acids Res.
   Abstract »    Full Text »    PDF »
Use of a Dominant rpsL Allele Conferring Streptomycin Dependence for Positive and Negative Selection in Thermus thermophilus.
E. Blas-Galindo, F. Cava, E. Lopez-Vinas, J. Mendieta, and J. Berenguer (2007)
Appl. Envir. Microbiol. 73, 5138-5145
   Abstract »    Full Text »    PDF »
G-ribo motif favors the formation of pseudoknots in ribosomal RNA.
S. V. Steinberg and Y. I. Boutorine (2007)
RNA 13, 1036-1042
   Abstract »    Full Text »    PDF »
Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA.
F. Razga, J. Koca, A. Mokdad, and J. Sponer (2007)
Nucleic Acids Res. 35, 4007-4017
   Abstract »    Full Text »    PDF »
Functional genetic selection of Helix 66 in Escherichia coli 23S rRNA identified the eukaryotic-binding sequence for ribosomal protein L2.
K. Kitahara, A. Kajiura, N. S. Sato, and T. Suzuki (2007)
Nucleic Acids Res. 35, 4018-4029
   Abstract »    Full Text »    PDF »
Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit.
C. M. Dunham, M. Selmer, S. S. Phelps, A. C. Kelley, T. Suzuki, S. Joseph, and V. Ramakrishnan (2007)
RNA 13, 817-823
   Abstract »    Full Text »    PDF »
Escherichia coli ribosomal protein L20 binds as a single monomer to its own mRNA bearing two potential binding sites.
F. Allemand, J. Haentjens, C. Chiaruttini, C. Royer, and M. Springer (2007)
Nucleic Acids Res. 35, 3016-3031
   Abstract »    Full Text »    PDF »
Anticodon-dependent conservation of bacterial tRNA gene sequences.
M. E. Saks and J. S. Conery (2007)
RNA 13, 651-660
   Abstract »    Full Text »    PDF »
G-ribo: A new structural motif in ribosomal RNA.
S. V. Steinberg and Y. I. Boutorine (2007)
RNA 13, 549-554
   Abstract »    Full Text »    PDF »
Ribosomal RNA guanine-(N2)-methyltransferases and their targets.
P. V. Sergiev, A. A. Bogdanov, and O. A. Dontsova (2007)
Nucleic Acids Res. 35, 2295-2301
   Abstract »    Full Text »    PDF »
Induced-fit tightens pleuromutilins binding to ribosomes and remote interactions enable their selectivity.
C. Davidovich, A. Bashan, T. Auerbach-Nevo, R. D. Yaggie, R. R. Gontarek, and A. Yonath (2007)
PNAS 104, 4291-4296
   Abstract »    Full Text »    PDF »
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA.
D. Piekna-Przybylska, W. A. Decatur, and M. J. Fournier (2007)
RNA 13, 305-312
   Abstract »    Full Text »    PDF »



ADVERTISEMENT
Click Me!

ADVERTISEMENT
Click Me!

To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)