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Science 14 April 2006:
Vol. 312. no. 5771, pp. 237 - 241
DOI: 10.1126/science.1126002

Research Articles

Atomic Description of an Enzyme Reaction Dominated by Proton Tunneling

Laura Masgrau,1,2* Anna Roujeinikova,1,3 Linus O. Johannissen,1,2 Parvinder Hothi,1,3 Jaswir Basran,4 Kara E. Ranaghan,5 Adrian J. Mulholland,5{dagger} Michael J. Sutcliffe,1,2{dagger} Nigel S. Scrutton,1,3{dagger} David Leys1,3{dagger}

We present an atomic-level description of the reaction chemistry of an enzyme-catalyzed reaction dominated by proton tunneling. By solving structures of reaction intermediates at near-atomic resolution, we have identified the reaction pathway for tryptamine oxidation by aromatic amine dehydrogenase. Combining experiment and computer simulation, we show proton transfer occurs predominantly to oxygen O2 of Asp128ß in a reaction dominated by tunneling over ~0.6 angstroms. The role of long-range coupled motions in promoting tunneling is controversial. We show that, in this enzyme system, tunneling is promoted by a short-range motion modulating proton-acceptor distance and no long-range coupled motion is required.

1 Manchester Interdisciplinary Biocentre, University of Manchester, Jackson's Mill, Post Office Box 88, Manchester M60 1QD, UK.
2 School of Chemical Engineering and Analytical Science, University of Manchester, Jackson's Mill, Post Office Box 88, Manchester M60 1QD, UK.
3 Faculty of Life Sciences, University of Manchester, Jackson's Mill, Post Office Box 88, Manchester M60 1QD, UK.
4 Department of Biochemistry, University of Leicester, University Road, Leicester LE1 7RH, UK.
5 School of Chemistry, University of Bristol, Cantocks Close, Bristol BS8 1TS, UK.

* Present address: Unité de Bioinformatique Structurale, Institut Pasteur, 25 Rue du Dr Roux, 75724 Paris, France.

{dagger} To whom correspondence should be addressed. E-mail: david.leys{at}manchester.ac.uk (D.L.); michael.sutcliffe{at}manchester.ac.uk (M.J.S.); adrian.mulholland{at}bristol.ac.uk (A.J.M.); nigel.scrutton{at}manchester.ac.uk (N.S.S.)

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THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
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S. Saen-Oon, M. Ghanem, V. L. Schramm, and S. D. Schwartz (2008)
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Metal active site elasticity linked to activation of homocysteine in methionine synthases.
M. Koutmos, R. Pejchal, T. M. Bomer, R. G. Matthews, J. L. Smith, and M. L. Ludwig (2008)
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New Insights into the Reductive Half-reaction Mechanism of Aromatic Amine Dehydrogenase Revealed by Reaction with Carbinolamine Substrates.
A. Roujeinikova, P. Hothi, L. Masgrau, M. J. Sutcliffe, N. S. Scrutton, and D. Leys (2007)
J. Biol. Chem. 282, 23766-23777
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Intracellular pH Sensors: Design Principles and Functional Significance.
J. Srivastava, D. L. Barber, and M. P. Jacobson (2007)
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Conformational Effects in Enzyme Catalysis: Reaction via a High Energy Conformation in Fatty Acid Amide Hydrolase.
A. Lodola, M. Mor, J. Zurek, G. Tarzia, D. Piomelli, J. N. Harvey, and A. J. Mulholland (2007)
Biophys. J. 92, L20-L22
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Promoting motions in enzyme catalysis probed by pressure studies of kinetic isotope effects.
S. Hay, M. J. Sutcliffe, and N. S. Scrutton (2007)
PNAS 104, 507-512
   Abstract »    Full Text »    PDF »
Atomic Level Insight into the Oxidative Half-reaction of Aromatic Amine Dehydrogenase.
A. Roujeinikova, N. S. Scrutton, and D. Leys (2006)
J. Biol. Chem. 281, 40264-40272
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Science. ISSN 0036-8075 (print), 1095-9203 (online)