Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 17 March 2006:
Vol. 311. no. 5767, pp. 1600 - 1603
DOI: 10.1126/science.1119623

Reports

Probing Gene Expression in Live Cells, One Protein Molecule at a Time

Ji Yu,1* Jie Xiao,1* Xiaojia Ren,1 Kaiqin Lao,2 X. Sunney Xie1{dagger}

We directly observed real-time production of single protein molecules in individual Escherichia coli cells. A fusion protein of a fast-maturing yellow fluorescent protein (YFP) and a membrane-targeting peptide was expressed under a repressed condition. The membrane-localized YFP can be detected with single-molecule sensitivity. We found that the protein molecules are produced in bursts, with each burst originating from a stochastically transcribed single messenger RNA molecule, and that protein copy numbers in the bursts follow a geometric distribution. The quantitative study of low-level gene expression demonstrates the potential of single-molecule experiments in elucidating the workings of fundamental biological processes in living cells.

1 Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
2 Applied Biosystems, Foster City, CA 94404, USA.

* These authors contributed equally to this work.

{dagger} To whom correspondence should be addressed. E-mail: xie{at}chemistry.harvard.edu

Read the Full Text



THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources.
X. Dai, O. Yli-Harja, and A. S. Ribeiro (2009)
Bioinformatics 25, 2362-2368
   Abstract »    Full Text »    PDF »
Multiple roles of the NF-{kappa}B signaling pathway regulated by coupled negative feedback circuits.
D. Kim, W. Kolch, and K.-H. Cho (2009)
FASEB J 23, 2796-2802
   Abstract »    Full Text »    PDF »
Elongation dynamics shape bursty transcription and translation.
M. Dobrzynski and F. J. Bruggeman (2009)
PNAS 106, 2583-2588
   Abstract »    Full Text »    PDF »
Integrated microfluidic bioprocessor for single-cell gene expression analysis.
N. M. Toriello, E. S. Douglas, N. Thaitrong, S. C. Hsiao, M. B. Francis, C. R. Bertozzi, and R. A. Mathies (2008)
PNAS 105, 20173-20178
   Abstract »    Full Text »    PDF »
Extinction and resurrection in gene networks.
D. Schultz, A. M. Walczak, J. N. Onuchic, and P. G. Wolynes (2008)
PNAS 105, 19165-19170
   Abstract »    Full Text »    PDF »
Analytical distributions for stochastic gene expression.
V. Shahrezaei and P. S. Swain (2008)
PNAS 105, 17256-17261
   Abstract »    Full Text »    PDF »
Dynamic Effect of Bortezomib on Nuclear Factor-{kappa}B Activity and Gene Expression in Tumor Cells.
M.-H. Sung, L. Bagain, Z. Chen, T. Karpova, X. Yang, C. Silvin, T. C. Voss, J. G. McNally, C. Van Waes, and G. L. Hager (2008)
Mol. Pharmacol. 74, 1215-1222
   Abstract »    Full Text »    PDF »
A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell.
P. J. Choi, L. Cai, K. Frieda, and X. S. Xie (2008)
Science 322, 442-446
   Abstract »    Full Text »    PDF »
Intron length increases oscillatory periods of gene expression in animal cells.
I. A. Swinburne, D. G. Miguez, D. Landgraf, and P. A. Silver (2008)
Genes & Dev. 22, 2342-2346
   Abstract »    Full Text »    PDF »
Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression.
J. M. Pedraza and J. Paulsson (2008)
Science 319, 339-343
   Abstract »    Full Text »    PDF »
Vibrio cholerae FabV Defines a New Class of Enoyl-Acyl Carrier Protein Reductase.
R. P. Massengo-Tiasse and J. E. Cronan (2008)
J. Biol. Chem. 283, 1308-1316
   Abstract »    Full Text »    PDF »
Single-molecule biophysics: at the interface of biology, physics and chemistry.
A. A Deniz, S. Mukhopadhyay, and E. A Lemke (2008)
J R Soc Interface 5, 15-45
   Abstract »    Full Text »    PDF »
How gene order is influenced by the biophysics of transcription regulation.
G. Kolesov, Z. Wunderlich, O. N. Laikova, M. S. Gelfand, and L. A. Mirny (2007)
PNAS 104, 13948-13953
   Abstract »    Full Text »    PDF »
Biology by design: reduction and synthesis of cellular components and behaviour.
P. Marguet, F. Balagadde, C. Tan, and L. You (2007)
J R Soc Interface 4, 607-623
   Abstract »    Full Text »    PDF »
Single-molecule Chemistry and Biology Special Feature: New directions in single-molecule imaging and analysis.
W. E. Moerner (2007)
PNAS 104, 12596-12602
   Abstract »    Full Text »    PDF »
In Vivo Functional Analyses of the Type II Acyl Carrier Proteins of Fatty Acid Biosynthesis.
N. R. De Lay and J. E. Cronan (2007)
J. Biol. Chem. 282, 20319-20328
   Abstract »    Full Text »    PDF »
Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell.
J. Elf, G.-W. Li, and X. S. Xie (2007)
Science 316, 1191-1194
   Abstract »    Full Text »    PDF »
Characterization and application of single fluorescent nanodiamonds as cellular biomarkers.
C.-C. Fu, H.-Y. Lee, K. Chen, T.-S. Lim, H.-Y. Wu, P.-K. Lin, P.-K. Wei, P.-H. Tsao, H.-C. Chang, and W. Fann (2007)
PNAS 104, 727-732
   Abstract »    Full Text »    PDF »
Counting Low-Copy Number Proteins in a Single Cell.
B. Huang, H. Wu, D. Bhaya, A. Grossman, S. Granier, B. K. Kobilka, and R. N. Zare (2007)
Science 315, 81-84
   Abstract »    Full Text »    PDF »
Simulated maximum likelihood method for estimating kinetic rates in gene expression.
T. Tian, S. Xu, J. Gao, and K. Burrage (2007)
Bioinformatics 23, 84-91
   Abstract »    Full Text »    PDF »
From Fluctuations to Phenotypes: The Physiology of Noise.
M. S. Samoilov, G. Price, and A. P. Arkin (2006)
Sci. STKE 2006, re17
   Abstract »    Full Text »    PDF »
A Brief History of Systems Biology: "Every object that biology studies is a system of systems." Francois Jacob (1974)..
A. Trewavas (2006)
PLANT CELL 18, 2420-2430
   Full Text »    PDF »
Single molecules of the bacterial actin MreB undergo directed treadmilling motion in Caulobacter crescentus.
S. Y. Kim, Z. Gitai, A. Kinkhabwala, L. Shapiro, and W. E. Moerner (2006)
PNAS 103, 10929-10934
   Abstract »    Full Text »    PDF »
Living cells as test tubes..
X. S. Xie, J. Yu, and W. Y. Yang (2006)
Science 312, 228-230
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)