Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 2 September 2005: Vol. 309. no. 5740, pp. 1527 - 1528 DOI: 10.1126/science.1117806
|
|
Viewpoint
The Functional Genomics of Noncoding RNA
John S. Mattick
Large numbers of noncoding RNA transcripts (ncRNAs) are being revealed by complementary DNA cloning and genome tiling array studies in animals. The big and as yet largely unanswered question is whether these transcripts are relevant. A paper by Willingham et al. shows the way forward by developing a strategy for large-scale functional screening of ncRNAs, involving small interfering RNA knockdowns in cell-based screens, which identified a previously unidentified ncRNA repressor of the transcription factor NFAT. It appears likely that ncRNAs constitute a critical hidden layer of gene regulation in complex organisms, the understanding of which requires new approaches in functional genomics.
Australian Research Council Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane, QLD 4072, Australia. E-mail: j.mattick{at}imb.uq.edu.au
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- The Modern RNP World of Eukaryotes.
- L. J. Collins, C. G. Kurland, P. Biggs, and D. Penny (2009)
J. Hered.
100, 597-604
| Abstract »
| Full Text »
| PDF »
- Small regulatory RNAs in neurodevelopmental disorders.
- S. Chang, S. Wen, D. Chen, and P. Jin (2009)
Hum. Mol. Genet.
18, R18-R26
| Abstract »
| Full Text »
| PDF »
- Prediction of RNA secondary structure using generalized centroid estimators.
- M. Hamada, H. Kiryu, K. Sato, T. Mituyama, and K. Asai (2009)
Bioinformatics
25, 465-473
| Abstract »
| Full Text »
| PDF »
- The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA.
- C. P. Keating, M. K. Hill, D. J. Hawkes, R. P. Smyth, C. Isel, S.-Y. Le, A. C. Palmenberg, J. A. Marshall, R. Marquet, G. J. Nabel, et al. (2009)
Nucleic Acids Res.
37, 945-956
| Abstract »
| Full Text »
| PDF »
- Growth arrest in human T-cells is controlled by the non-coding RNA growth-arrest-specific transcript 5 (GAS5).
- M. Mourtada-Maarabouni, V. L. Hedge, L. Kirkham, F. Farzaneh, and G. T. Williams (2008)
J. Cell Sci.
121, 939-946
| Abstract »
| Full Text »
| PDF »
- Origin of phenotypes: Genes and transcripts.
- T. R. Gingeras (2007)
Genome Res.
17, 682-690
| Abstract »
| Full Text »
| PDF »
- A new paradigm for developmental biology.
- J. S. Mattick (2007)
J. Exp. Biol.
210, 1526-1547
| Abstract »
| Full Text »
| PDF »
- Reassortment and Concerted Evolution in Banana Bunchy Top Virus Genomes.
- J.-M. Hu, H.-C. Fu, C.-H. Lin, H.-J. Su, and H.-H. Yeh (2007)
J. Virol.
81, 1746-1761
| Abstract »
| Full Text »
| PDF »
- RNAdb 2.0--an expanded database of mammalian non-coding RNAs.
- K. C. Pang, S. Stephen, M. E. Dinger, P. G. Engstrom, B. Lenhard, and J. S. Mattick (2007)
Nucleic Acids Res.
35, D178-D182
| Abstract »
| Full Text »
| PDF »
- Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum.
- K. V. Prasanth and D. L. Spector (2007)
Genes & Dev.
21, 11-42
| Abstract »
| Full Text »
| PDF »
- Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction.
- O. T. P. Kim, K. Yura, and N. Go (2006)
Nucleic Acids Res.
| Abstract »
| Full Text »
| PDF »
- A Novel Class of Developmentally Regulated Noncoding RNAs in Leishmania.
- C. Dumas, C. Chow, M. Muller, and B. Papadopoulou (2006)
Eukaryot. Cell
5, 2033-2046
| Abstract »
| Full Text »
| PDF »
- Exportin-5 orthologues are functionally divergent among species.
- S. Shibata, M. Sasaki, T. Miki, A. Shimamoto, Y. Furuichi, J. Katahira, and Y. Yoneda (2006)
Nucleic Acids Res.
34, 4711-4721
| Abstract »
| Full Text »
| PDF »
- The complexity of the mammalian transcriptome.
- S. Gustincich, A. Sandelin, C. Plessy, S. Katayama, R. Simone, D. Lazarevic, Y. Hayashizaki, and P. Carninci (2006)
J. Physiol.
575, 321-332
| Abstract »
| Full Text »
| PDF »
- Non-coding RNA..
- J. S. Mattick and I. V. Makunin (2006)
Hum. Mol. Genet.
15, R17-R29
| Abstract »
| Full Text »
| PDF »
- A noncoding RNA is a potential marker of cell fate during mammary gland development.
- M. R. Ginger, A. N. Shore, A. Contreras, M. Rijnkels, J. Miller, M. F. Gonzalez-Rimbau, and J. M. Rosen (2006)
PNAS
103, 5781-5786
| Abstract »
| Full Text »
| PDF »
- The positive aspects of stress: strain initiates domain decondensation (SIDD).
- S. Winkelmann, M. Klar, C. Benham, A. Prashanth, S. Goetze, A. Gluch, and J. Bode (2006)
Brief Funct Genomic Proteomic
5, 24-31
| Abstract »
| Full Text »
| PDF »
- Experimental approaches to identify non-coding RNAs.
- A. Huttenhofer and J. Vogel (2006)
Nucleic Acids Res.
34, 635-646
| Abstract »
| Full Text »
| PDF »
- MicroRNA enrichment among short 'ultraconserved' sequences in insects..
- T. Tran, P. Havlak, and J. Miller (2006)
Nucleic Acids Res.
34, e65
| Abstract »
| Full Text »
| PDF »
- RNomics: Identification and Function of Small Non-Protein-coding RNAs in Model Organisms.
- A. HUTTENHOFER (2006)
Cold Spring Harb Symp Quant Biol
71, 135-140
| Abstract »
| PDF »
|
|