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Science 8 July 2005:
Vol. 309. no. 5732, pp. 303 - 306
DOI: 10.1126/science.1110428

Reports

Inferential Structure Determination

Wolfgang Rieping,* Michael Habeck,* Michael Nilges{dagger}

Macromolecular structures calculated from nuclear magnetic resonance data are not fully determined by experimental data but depend on subjective choices in data treatment and parameter settings. This makes it difficult to objectively judge the precision of the structures. We used Bayesian inference to derive a probability distribution that represents the unknown structure and its precision. This probability distribution also determines additional unknowns, such as theory parameters, that previously had to be chosen empirically. We implemented this approach by using Markov chain Monte Carlo techniques. Our method provides an objective figure of merit and improves structural quality.

Unité de Bioinformatique Structurale, Institut Pasteur, CNRS URA 2185, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France.

* These authors contributed equally to this work.

{dagger} To whom correspondence should be addressed. E-mail: nilges{at}pasteur.fr

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THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
ISD: a software package for Bayesian NMR structure calculation.
W. Rieping, M. Nilges, and M. Habeck (2008)
Bioinformatics 24, 1104-1105
   Abstract »    Full Text »    PDF »
Weighting of experimental evidence in macromolecular structure determination.
M. Habeck, W. Rieping, and M. Nilges (2006)
PNAS 103, 1756-1761
   Abstract »    Full Text »    PDF »



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Science. ISSN 0036-8075 (print), 1095-9203 (online)