Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Systems Biology and New Technologies Enable Predictive and Preventative Medicine
Leroy Hood,1*James R. Heath,2,3Michael E. Phelps,3Biaoyang Lin1
Systems approaches to disease are grounded in the idea thatdisease-perturbed protein and gene regulatory networks differfrom their normal counterparts; we have been pursuing the possibilitythat these differences may be reflected by multiparameter measurementsof the blood. Such concepts are transforming current diagnosticand therapeutic approaches to medicine and, together with newtechnologies, will enable a predictive and preventive medicinethat will lead to personalized medicine.
1 Institute for Systems Biology, Seattle, WA, USA. 2 Department of Chemistry, California Institute of Technology, Pasadena, CA, USA. 3 Department of Molecular and Medical Pharmacology, The David Geffen School of Medicine at the University of California Los Angeles, Los Angeles, CA, USA.
* To whom correspondence should be addressed. E-mail: lhood{at}systemsbiology.org
The editors suggest the following Related Resources on Science sites:
In Science Magazine
INTRODUCTION TO SPECIAL ISSUE
Barbara R. Jasny and Leslie Roberts (22 October 2004) Science306 (5696), 629.
[DOI: 10.1126/science.306.5696.629] |Summary »|PDF »
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Temperament and Character Profiles of Sasang Typology in an Adult Clinical Sample.
S. H. Park, M.-g. Kim, S. J. Lee, J. Y. Kim, and H. Chae (2009)
Evid. Based Complement. Altern. Med.
|Abstract »|Full Text »|PDF »
The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases.
N. Gehlenborg, D. Hwang, I. Y. Lee, H. Yoo, D. Baxter, B. Petritis, R. Pitstick, B. Marzolf, S. J. DeArmond, G. A. Carlson, et al. (2009)
Database
2009, bap011
|Abstract »|Full Text »|PDF »
Contributions of Sasang Constitutional Medicine.
E. L. Cooper (2009)
Evid. Based Complement. Altern. Med.
6, 1-3
|Full Text »|PDF »
Systems Diagnostics: The Systems Approach to Molecular Imaging.
R. D. King, J. Rowland, S. G. Oliver, M. Young, W. Aubrey, E. Byrne, M. Liakata, M. Markham, P. Pir, L. N. Soldatova, et al. (2009)
Science
324, 85-89
|Abstract »|Full Text »|PDF »
Differential dependency network analysis to identify condition-specific topological changes in biological networks.
B. Zhang, H. Li, R. B. Riggins, M. Zhan, J. Xuan, Z. Zhang, E. P. Hoffman, R. Clarke, and Y. Wang (2009)
Bioinformatics
25, 526-532
|Abstract »|Full Text »|PDF »
Invited Commentary: From Genome-Wide Association Studies to Gene-Environment-Wide Interaction Studies--Challenges and Opportunities.
Confirmation of Gene Expression-Based Prediction of Survival in Non-Small Cell Lung Cancer.
N. L. Guo, Y.-W. Wan, K. Tosun, H. Lin, Z. Msiska, D. C. Flynn, S. C. Remick, V. Vallyathan, A. Dowlati, X. Shi, et al. (2008)
Clin. Cancer Res.
14, 8213-8220
|Abstract »|Full Text »|PDF »
Systems biology at the Institute for Systems Biology.
L. Hood, L. Rowen, D. J. Galas, and J. D. Aitchison (2008)
Brief Funct Genomic Proteomic
7, 239-248
|Abstract »|Full Text »|PDF »
The plasma proteome, adductome and idiosyncratic toxicity in toxicoproteomics research.
Genomics of Actinobacteria: Tracing the Evolutionary History of an Ancient Phylum.
M. Ventura, C. Canchaya, A. Tauch, G. Chandra, G. F. Fitzgerald, K. F. Chater, and D. van Sinderen (2007)
Microbiol. Mol. Biol. Rev.
71, 495-548
|Abstract »|Full Text »|PDF »
Genome-Wide Network Analysis Reveals the Global Properties of IFN-beta Immediate Transcriptional Effects in Humans.
G. H. Fernald, S. Knott, A. Pachner, S. J. Caillier, K. Narayan, J. R. Oksenberg, P. Mousavi, and S. E. Baranzini (2007)
J. Immunol.
178, 5076-5085
|Abstract »|Full Text »|PDF »
EBP, a Program for Protein Identification Using Multiple Tandem Mass Spectrometry Datasets.
T. S. Price, M. B. Lucitt, W. Wu, D. J. Austin, A. Pizarro, A. K. Yocum, I. A. Blair, G. A. FitzGerald, and T. Grosser (2007)
Mol. Cell. Proteomics
6, 527-536
|Abstract »|Full Text »|PDF »
Shotgun Glycopeptide Capture Approach Coupled with Mass Spectrometry for Comprehensive Glycoproteomics.
B. Sun, J. A. Ranish, A. G. Utleg, J. T. White, X. Yan, B. Lin, and L. Hood (2007)
Mol. Cell. Proteomics
6, 141-149
|Abstract »|Full Text »|PDF »
Probe-Independent and Direct Quantification of Insulin mRNA and Growth Hormone mRNA in Enriched Cell Preparations.
L. Van Lommel, K. Janssens, R. Quintens, K. Tsukamoto, D. Vander Mierde, K. Lemaire, C. Denef, J.-C. Jonas, G. Martens, D. Pipeleers, et al. (2006)
Diabetes
55, 3214-3220
|Abstract »|Full Text »|PDF »
Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target.
S. Horvath, B. Zhang, M. Carlson, K. V. Lu, S. Zhu, R. M. Felciano, M. F. Laurance, W. Zhao, S. Qi, Z. Chen, et al. (2006)
PNAS
103, 17402-17407
|Abstract »|Full Text »|PDF »
Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.
K. Laudanski, C. Miller-Graziano, W. Xiao, M. N. Mindrinos, D. R. Richards, A. De, L. L. Moldawer, R. V. Maier, P. Bankey, H. V. Baker, et al. (2006)
PNAS
103, 15564-15569
|Abstract »|Full Text »|PDF »
Thematic review series: Systems Biology Approaches to Metabolic and Cardiovascular Disorders. Lipidomics: a global approach to lipid analysis in biological systems.
Clinically Related Protein-Peptide Interactions Monitored in Real Time on Novel Peptide Chips by Surface Plasmon Resonance Imaging.
B. Cherif, A. Roget, C. L. Villiers, R. Calemczuk, V. Leroy, P. N. Marche, T. Livache, and M.-B. Villiers (2006)
Clin. Chem.
52, 255-262
|Abstract »|Full Text »|PDF »
Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium.
Y. Tan, L. Shi, S. M. Hussain, J. Xu, W. Tong, J. M. Frazier, and C. Wang (2006)
Bioinformatics
22, 77-87
|Abstract »|Full Text »|PDF »
Toward a Genome-Wide Systems Biology Analysis of Host-Pathogen Interactions in Group A Streptococcus.
A data integration methodology for systems biology.
D. Hwang, A. G. Rust, S. Ramsey, J. J. Smith, D. M. Leslie, A. D. Weston, P. de Atauri, J. D. Aitchison, L. Hood, A. F. Siegel, et al. (2005)
PNAS
102, 17296-17301
|Abstract »|Full Text »|PDF »
R. Beckman, E. Johnston-Halperin, Y. Luo, J. E. Green, and J. R. Heath (2005)
Science
310, 465-468
|Abstract »|Full Text »|PDF »
A label-free immunosensor array using single-chain antibody fragments.
N. Backmann, C. Zahnd, F. Huber, A. Bietsch, A. Pluckthun, H.-P. Lang, H.-J. Guntherodt, M. Hegner, and C. Gerber (2005)
PNAS
102, 14587-14592
|Abstract »|Full Text »|PDF »
Standardized Approach to Proteome Profiling of Human Serum Based on Magnetic Bead Separation and Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry.
S. Baumann, U. Ceglarek, G. M. Fiedler, J. Lembcke, A. Leichtle, and J. Thiery (2005)
Clin. Chem.
51, 973-980
|Abstract »|Full Text »|PDF »
A new measure of the robustness of biochemical networks.
B.-S. Chen, Y.-C. Wang, W.-S. Wu, and W.-H. Li (2005)
Bioinformatics
21, 2698-2705
|Abstract »|Full Text »|PDF »
The end of "naive reductionism": rise of systems biology or renaissance of physiology?.
Evidence for the Presence of Disease-Perturbed Networks in Prostate Cancer Cells by Genomic and Proteomic Analyses: A Systems Approach to Disease.
B. Lin, J. T. White, W. Lu, T. Xie, A. G. Utleg, X. Yan, E. C. Yi, P. Shannon, I. Khrebtukova, P. H. Lange, et al. (2005)
Cancer Res.
65, 3081-3091
|Abstract »|Full Text »|PDF »
Application of genome-wide expression analysis to human health and disease.
J. P. Cobb, M. N. Mindrinos, C. Miller-Graziano, S. E. Calvano, H. V. Baker, W. Xiao, K. Laudanski, B. H. Brownstein, C. M. Elson, D. L. Hayden, et al. (2005)
PNAS
102, 4801-4806
|Abstract »|Full Text »|PDF »