Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
PHYTOCHROME-INTERACTING FACTOR 1 Is a Critical bHLH Regulator of Chlorophyll Biosynthesis
Enamul Huq,1,2Bassem Al-Sady,2Matthew Hudson,2Chanhong Kim,3Klaus Apel,3Peter H. Quail2*
Photosynthetic organisms must achieve a delicate balance betweenthe light energy absorbed by chlorophyll and their capacityto channel that energy into productive photochemical reactions.Release of excess absorbed energy in the cell can cause lethalphotooxidative damage. We identified a basic helix-loop-helix(bHLH) transcription factor, designated PHYTOCHROME-INTERACTINGFACTOR 1 (PIF1), that negatively regulates chlorophyll biosynthesis.pif1 mutant seedlings accumulate excess free protochlorophyllidewhen grown in the dark, with consequent lethal bleaching uponexposure to light. PIF1 interacts specifically with the photoactivatedconformer of phytochromes A and B, suggesting a signaling pathwayby which chlorophyll biosynthetic rates are tightly controlledduring the critical initial emergence of seedlings from subterraneandarkness into sunlight.
1 Section of Molecular Cell and Developmental Biology and Institute of Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA. 2 Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA and U.S. Department of Agriculture/Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA. 3 Institute of Plant Sciences, Swiss Federal Institute of Technology (ETH), Universitatstrasse 2, 8092 Zurich, Switzerland.
* To whom correspondence should be addressed. E-mail: quail{at}nature.berkeley.edu
Cryptochromes, Phytochromes, and COP1 Regulate Light-Controlled Stomatal Development in Arabidopsis.
C.-Y. Kang, H.-L. Lian, F.-F. Wang, J.-R. Huang, and H.-Q. Yang (2009)
PLANT CELL
21, 2624-2641
|Abstract »|Full Text »|PDF »
Singlet oxygen-dependent translational control in the tigrina-d.12 mutant of barley.
D. Khandal, I. Samol, F. Buhr, S. Pollmann, H. Schmidt, S. Clemens, S. Reinbothe, and C. Reinbothe (2009)
PNAS
106, 13112-13117
|Abstract »|Full Text »|PDF »
PIF3 is a repressor of chloroplast development.
P. G. Stephenson, C. Fankhauser, and M. J. Terry (2009)
PNAS
106, 7654-7659
|Abstract »|Full Text »|PDF »
Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors.
J. Shin, K. Kim, H. Kang, I. S. Zulfugarov, G. Bae, C.-H. Lee, D. Lee, and G. Choi (2009)
PNAS
106, 7660-7665
|Abstract »|Full Text »|PDF »
Blue Light Induces Degradation of the Negative Regulator Phytochrome Interacting Factor 1 to Promote Photomorphogenic Development of Arabidopsis Seedlings.
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination.
A. Fukushima, M. Kusano, N. Nakamichi, M. Kobayashi, N. Hayashi, H. Sakakibara, T. Mizuno, and K. Saito (2009)
PNAS
106, 7251-7256
|Abstract »|Full Text »|PDF »
Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis.
E. Oh, H. Kang, S. Yamaguchi, J. Park, D. Lee, Y. Kamiya, and G. Choi (2009)
PLANT CELL
21, 403-419
|Abstract »|Full Text »|PDF »
Role of root UV-B sensing in Arabidopsis early seedling development.
H. Tong, C. D. Leasure, X. Hou, G. Yuen, W. Briggs, and Z.-H. He (2008)
PNAS
105, 21039-21044
|Abstract »|Full Text »|PDF »
Discrete and Essential Roles of the Multiple Domains of Arabidopsis FHY3 in Mediating Phytochrome A Signal Transduction.
R. Lin, Y. Teng, H.-J. Park, L. Ding, C. Black, P. Fang, and H. Wang (2008)
Plant Physiology
148, 981-992
|Abstract »|Full Text »|PDF »
Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mg-protoporphyrin IX accumulation.
M. Moulin, A. C. McCormac, M. J. Terry, and A. G. Smith (2008)
PNAS
105, 15178-15183
|Abstract »|Full Text »|PDF »
The steady-state level of Mg-protoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis.
N. Mochizuki, R. Tanaka, A. Tanaka, T. Masuda, and A. Nagatani (2008)
PNAS
105, 15184-15189
|Abstract »|Full Text »|PDF »
LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-Box Protein Involved in Light-Dependent Development and Gene Expression, Undergoes COP1-Mediated Ubiquitination.
S. Datta, H. Johansson, C. Hettiarachchi, M. L. Irigoyen, M. Desai, V. Rubio, and M. Holm (2008)
PLANT CELL
20, 2324-2338
|Abstract »|Full Text »|PDF »
The sunflower HD-Zip transcription factor HAHB4 is up-regulated in darkness, reducing the transcription of photosynthesis-related genes.
P. A. Manavella, C. A. Dezar, F. D. Ariel, M. F. Drincovich, and R. L. Chan (2008)
J. Exp. Bot.
59, 3143-3155
|Abstract »|Full Text »|PDF »
PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis.
Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes.
H. Shen, L. Zhu, A. Castillon, M. Majee, B. Downie, and E. Huq (2008)
PLANT CELL
20, 1586-1602
|Abstract »|Full Text »|PDF »
SOMNUS, a CCCH-Type Zinc Finger Protein in Arabidopsis, Negatively Regulates Light-Dependent Seed Germination Downstream of PIL5.
D. H. Kim, S. Yamaguchi, S. Lim, E. Oh, J. Park, A. Hanada, Y. Kamiya, and G. Choi (2008)
PLANT CELL
20, 1260-1277
|Abstract »|Full Text »|PDF »
Mechanistic duality of transcription factor function in phytochrome signaling.
B. Al-Sady, E. A. Kikis, E. Monte, and P. H. Quail (2008)
PNAS
105, 2232-2237
|Abstract »|Full Text »|PDF »
The Arabidopsis Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels.
P. Leivar, E. Monte, B. Al-Sady, C. Carle, A. Storer, J. M. Alonso, J. R. Ecker, and P. H. Quail (2008)
PLANT CELL
20, 337-352
|Abstract »|Full Text »|PDF »
Role of Arabidopsis RAP2.4 in Regulating Light- and Ethylene-Mediated Developmental Processes and Drought Stress Tolerance.
Blue-Light-Independent Activity of Arabidopsis Cryptochromes in the Regulation of Steady-State Levels of Protein and mRNA Expression.
Y.-J. Yang, Z.-C. Zuo, X.-Y. Zhao, X. Li, J. Klejnot, Y. Li, P. Chen, S.-P. Liang, X.-H. Yu, X.-M. Liu, et al. (2008)
Mol Plant
1, 167-177
|Abstract »|Full Text »|PDF »
The Basic Helix-Loop-Helix Transcription Factor PIF5 Acts on Ethylene Biosynthesis and Phytochrome Signaling by Distinct Mechanisms.
R. Khanna, Y. Shen, C. M. Marion, A. Tsuchisaka, A. Theologis, E. Schafer, and P. H. Quail (2007)
PLANT CELL
19, 3915-3929
|Abstract »|Full Text »|PDF »
The F-Box Protein MAX2 Functions as a Positive Regulator of Photomorphogenesis in Arabidopsis.
PIL5, a Phytochrome-Interacting bHLH Protein, Regulates Gibberellin Responsiveness by Binding Directly to the GAI and RGA Promoters in Arabidopsis Seeds.
E. Oh, S. Yamaguchi, J. Hu, J. Yusuke, B. Jung, I. Paik, H.-S. Lee, T.-p. Sun, Y. Kamiya, and G. Choi (2007)
PLANT CELL
19, 1192-1208
|Abstract »|Full Text »|PDF »
Glutathione S-Transferase Interacting with Far-Red Insensitive 219 Is Involved in Phytochrome A-Mediated Signaling in Arabidopsis.
FHY1 and FHL Act Together to Mediate Nuclear Accumulation of the Phytochrome A Photoreceptor.
A. Hiltbrunner, A. Tscheuschler, A. Viczian, T. Kunkel, S. Kircher, and E. Schafer (2006)
Plant Cell Physiol.
47, 1023-1034
|Abstract »|Full Text »|PDF »
Identification of Primary Target Genes of Phytochrome Signaling. Early Transcriptional Control during Shade Avoidance Responses in Arabidopsis.
I. Roig-Villanova, J. Bou, C. Sorin, P. F. Devlin, and J. F. Martinez-Garcia (2006)
Plant Physiology
141, 85-96
|Abstract »|Full Text »|PDF »
Arabidopsis CONSTANS-LIKE3 Is a Positive Regulator of Red Light Signaling and Root Growth.
S. Datta, G.H.C.M. Hettiarachchi, X.-W. Deng, and M. Holm (2006)
PLANT CELL
18, 70-84
|Abstract »|Full Text »|PDF »
Conservation and Divergence of Light-Regulated Genome Expression Patterns during Seedling Development in Rice and Arabidopsis.
Y. Jiao, L. Ma, E. Strickland, and X. W. Deng (2005)
PLANT CELL
17, 3239-3256
|Abstract »|Full Text »|PDF »
Arabidopsis FHY1 Protein Stability Is Regulated by Light via Phytochrome A and 26S Proteasome.
Y. Shen, S. Feng, L. Ma, R. Lin, L.-J. Qu, Z. Chen, H. Wang, and X. W. Deng (2005)
Plant Physiology
139, 1234-1243
|Abstract »|Full Text »|PDF »
Light Regulates COP1-Mediated Degradation of HFR1, a Transcription Factor Essential for Light Signaling in Arabidopsis.
J. Yang, R. Lin, J. Sullivan, U. Hoecker, B. Liu, L. Xu, X. W. Deng, and H. Wang (2005)
PLANT CELL
17, 804-821
|Abstract »|Full Text »|PDF »
A Novel Molecular Recognition Motif Necessary for Targeting Photoactivated Phytochrome Signaling to Specific Basic Helix-Loop-Helix Transcription Factors.
R. Khanna, E. Huq, E. A. Kikis, B. Al-Sady, C. Lanzatella, and P. H. Quail (2004)
PLANT CELL
16, 3033-3044
|Abstract »|Full Text »|PDF »