Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 5 September 2003: Vol. 301. no. 5638, pp. 1380 - 1382 DOI: 10.1126/science.1088176
|
|
Reports
Nuclear Membrane Proteins with Potential Disease Links Found by Subtractive Proteomics
Eric C. Schirmer,
Laurence Florens,*
Tinglu Guan,
John R. Yates, III,
Larry Gerace
To comprehensively identify integral membrane proteins of the nuclear envelope (NE), we prepared separately NEs and organelles known to cofractionate with them from liver. Proteins detected by multidimensional protein identification technology in the cofractionating organelles were subtracted from the NE data set. In addition to all 13 known NE integral proteins, 67 uncharacterized open reading frames with predicted membrane-spanning regions were identified. All of the eight proteins tested targeted to the NE, indicating that there are substantially more integral proteins of the NE than previously thought. Furthermore, 23 of these mapped within chromosome regions linked to a variety of dystrophies.
Department of Cell Biology, Scripps Research Institute, La Jolla, CA 92037, USA.
* Present address: Stowers Institute for Medical Research, Kansas City, MO 64110, USA.
To whom correspondence should be addressed. E-mail: lgerace{at}scripps.edu (L.G.); jyates{at}scripps.edu (J.R.Y.)
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Regulation of Myoblast Differentiation by the Nuclear Envelope Protein NET39.
- G.-H. Liu, T. Guan, K. Datta, J. Coppinger, J. Yates III, and L. Gerace (2009)
Mol. Cell. Biol.
29, 5800-5812
| Abstract »
| Full Text »
| PDF »
- Overlapping Functions of Nuclear Envelope Proteins NET25 (Lem2) and Emerin in Regulation of Extracellular Signal-Regulated Kinase Signaling in Myoblast Differentiation.
- M. D. Huber, T. Guan, and L. Gerace (2009)
Mol. Cell. Biol.
29, 5718-5728
| Abstract »
| Full Text »
| PDF »
- NET37, a Nuclear Envelope Transmembrane Protein with Glycosidase Homology, Is Involved in Myoblast Differentiation.
- K. Datta, T. Guan, and L. Gerace (2009)
J. Biol. Chem.
284, 29666-29676
| Abstract »
| Full Text »
| PDF »
- Interaction of TorsinA with Its Major Binding Partners Is Impaired by the Dystonia-associated {Delta}GAG Deletion.
- T. V. Naismith, S. Dalal, and P. I. Hanson (2009)
J. Biol. Chem.
284, 27866-27874
| Abstract »
| Full Text »
| PDF »
- Evidence for a Shared Nuclear Pore Complex Architecture That Is Conserved from the Last Common Eukaryotic Ancestor.
- J. A. DeGrasse, K. N. DuBois, D. Devos, T. N. Siegel, A. Sali, M. C. Field, M. P. Rout, and B. T. Chait (2009)
Mol. Cell. Proteomics
8, 2119-2130
| Abstract »
| Full Text »
| PDF »
- Bringing KASH under the SUN: the many faces of nucleo-cytoskeletal connections.
- D. Razafsky and D. Hodzic (2009)
J. Cell Biol.
186, 461-472
| Abstract »
| Full Text »
| PDF »
- Proteome analysis of human nuclear insoluble fractions..
- H. Takata, H. Nishijima, S.-i. Ogura, T. Sakaguchi, P. A. Bubulya, T. Mochizuki, and K.-i. Shibahara (2009)
Genes Cells
14, 975-990
| Abstract »
| Full Text »
| PDF »
- MMP-9 Sheds the {beta}2 Integrin Subunit (CD18) from Macrophages.
- T. Vaisar, S. Y. Kassim, I. G. Gomez, P. S. Green, S. Hargarten, P. J. Gough, W. C. Parks, C. L. Wilson, E. W. Raines, and J. W. Heinecke (2009)
Mol. Cell. Proteomics
8, 1044-1060
| Abstract »
| Full Text »
| PDF »
- Requirement for Sun1 in the expression of meiotic reproductive genes and piRNA.
- Y.-H. Chi, L. I. Cheng, T. Myers, J. M. Ward, E. Williams, Q. Su, L. Faucette, J.-Y. Wang, and K.-T. Jeang (2009)
Development
136, 965-973
| Abstract »
| Full Text »
| PDF »
- A nuclear-envelope bridge positions nuclei and moves chromosomes.
- D. A. Starr (2009)
J. Cell Sci.
122, 577-586
| Abstract »
| Full Text »
| PDF »
- Nesprin 4 is an outer nuclear membrane protein that can induce kinesin-mediated cell polarization.
- K. J. Roux, M. L. Crisp, Q. Liu, D. Kim, S. Kozlov, C. L. Stewart, and B. Burke (2009)
PNAS
106, 2194-2199
| Abstract »
| Full Text »
| PDF »
- Analysis of Prelamin A Biogenesis Reveals the Nucleus to be a CaaX Processing Compartment.
- J. Barrowman, C. Hamblet, C. M. George, and S. Michaelis (2008)
Mol. Biol. Cell
19, 5398-5408
| Abstract »
| Full Text »
| PDF »
- Plasma-membrane-anchored growth factor pro-amphiregulin binds A-type lamin and regulates global transcription.
- M. Isokane, M. Hieda, S. Hirakawa, M. Shudou, K. Nakashiro, K. Hashimoto, H. Hamakawa, and S. Higashiyama (2008)
J. Cell Sci.
121, 3608-3618
| Abstract »
| Full Text »
| PDF »
- Sperm Chromatin: Fertile Grounds for Proteomic Discovery of Clinical Tools.
- T. F. Wu and D. S. Chu (2008)
Mol. Cell. Proteomics
7, 1876-1886
| Abstract »
| Full Text »
| PDF »
- Salivary Proteomics for Oral Cancer Biomarker Discovery.
- S. Hu, M. Arellano, P. Boontheung, J. Wang, H. Zhou, J. Jiang, D. Elashoff, R. Wei, J. A. Loo, and D. T. Wong (2008)
Clin. Cancer Res.
14, 6246-6252
| Abstract »
| Full Text »
| PDF »
- Emerin and the Nuclear Lamina in Muscle and Cardiac Disease.
- J. M. Holaska (2008)
Circ. Res.
103, 16-23
| Abstract »
| Full Text »
| PDF »
- Nuclear pore disassembly from endoplasmic reticulum membranes promotes Ca2+ signalling competency.
- M. J. Boulware and J. S. Marchant (2008)
J. Physiol.
586, 2873-2888
| Abstract »
| Full Text »
| PDF »
- NEP-A and NEP-B both contribute to nuclear pore formation in Xenopus eggs and oocytes.
- G. Salpingidou, R. Rzepecki, E. Kiseleva, C. Lyon, B. Lane, K. Fusiek, A. Golebiewska, S. Drummond, T. Allen, J. A. Ellis, et al. (2008)
J. Cell Sci.
121, 706-716
| Abstract »
| Full Text »
| PDF »
- Capital Cells: The American Society for Cell Biology, Washington, D.C., December 1-5, 2007.
- N. LeBrasseur and R. Williams (2008)
J. Cell Biol.
180, 654-659
| Full Text »
| PDF »
- LUMA interacts with emerin and influences its distribution at the inner nuclear membrane.
- L. Bengtsson and H. Otto (2008)
J. Cell Sci.
121, 536-548
| Abstract »
| Full Text »
| PDF »
- Till Disassembly Do Us Part: A Happy Marriage of Nuclear Envelope and Chromatin.
- Y. Tsuchiya (2008)
J. Biochem.
143, 155-161
| Abstract »
| Full Text »
| PDF »
- Shaping the endoplasmic reticulum into the nuclear envelope.
- D. J. Anderson and M. W. Hetzer (2008)
J. Cell Sci.
121, 137-142
| Abstract »
| Full Text »
| PDF »
- Blurring the Boundary: The Nuclear Envelope Extends Its Reach.
- C. L. Stewart, K. J. Roux, and B. Burke (2007)
Science
318, 1408-1412
| Abstract »
| Full Text »
| PDF »
- Requirements for the localization of nesprin-3 at the nuclear envelope and its interaction with plectin.
- M. Ketema, K. Wilhelmsen, I. Kuikman, H. Janssen, D. Hodzic, and A. Sonnenberg (2007)
J. Cell Sci.
120, 3384-3394
| Abstract »
| Full Text »
| PDF »
- Histone Acetyltransferase hALP and Nuclear Membrane Protein hsSUN1 Function in De-condensation of Mitotic Chromosomes.
- Y.-H. Chi, K. Haller, J.-M. Peloponese Jr., and K.-T. Jeang (2007)
J. Biol. Chem.
282, 27447-27458
| Abstract »
| Full Text »
| PDF »
- Nuclear localization of barrier-to-autointegration factor is correlated with progression of S phase in human cells.
- T. Haraguchi, T. Koujin, H. Osakada, T. Kojidani, C. Mori, H. Masuda, and Y. Hiraoka (2007)
J. Cell Sci.
120, 1967-1977
| Abstract »
| Full Text »
| PDF »
- Herpes Simplex Virus Infection Induces Phosphorylation and Delocalization of Emerin, a Key Inner Nuclear Membrane Protein.
- J. B. Morris, H. Hofemeister, and P. O'Hare (2007)
J. Virol.
81, 4429-4437
| Abstract »
| Full Text »
| PDF »
- A conserved phosphatase cascade that regulates nuclear membrane biogenesis.
- Y. Kim, M. S. Gentry, T. E. Harris, S. E. Wiley, J. C. Lawrence Jr, and J. E. Dixon (2007)
PNAS
104, 6596-6601
| Abstract »
| Full Text »
| PDF »
- The nuclear envelope protein MAN1 regulates TGF{beta} signaling and vasculogenesis in the embryonic yolk sac.
- T. V. Cohen, O. Kosti, and C. L. Stewart (2007)
Development
134, 1385-1395
| Abstract »
| Full Text »
| PDF »
- Inner Nuclear Membrane Proteins Asi1, Asi2, and Asi3 Function in Concert to Maintain the Latent Properties of Transcription Factors Stp1 and Stp2.
- A. Zargari, M. Boban, S. Heessen, C. Andreasson, J. Thyberg, and P. O. Ljungdahl (2007)
J. Biol. Chem.
282, 594-605
| Abstract »
| Full Text »
| PDF »
- Cardiovascular Proteomics: Tools to Develop Novel Biomarkers and Potential Applications.
- S. Arab, A. O. Gramolini, P. Ping, T. Kislinger, B. Stanley, J. van Eyk, M. Ouzounian, D. H. MacLennan, A. Emili, and P. P. Liu (2006)
J. Am. Coll. Cardiol.
48, 1733-1741
| Abstract »
| Full Text »
| PDF »
- Parvoviral nuclear import: bypassing the host nuclear-transport machinery..
- S. Cohen, A. R. Behzad, J. B. Carroll, and N. Pante (2006)
J. Gen. Virol.
87, 3209-3213
| Abstract »
| Full Text »
| PDF »
- Guilt by Association: The Nuclear Envelope Proteome and Disease.
- G. S. Wilkie and E. C. Schirmer (2006)
Mol. Cell. Proteomics
5, 1865-1875
| Abstract »
| Full Text »
| PDF »
- Man1, an inner nuclear membrane protein, regulates vascular remodeling by modulating transforming growth factor {beta} signaling.
- A. Ishimura, J. K. Ng, M. Taira, S. G. Young, and S.-I. Osada (2006)
Development
133, 3919-3928
| Abstract »
| Full Text »
| PDF »
- Nuclear lamins: laminopathies and their role in premature ageing..
- J. L. V. Broers, F. C. S. Ramaekers, G. Bonne, R. B. Yaou, and C. J. Hutchison (2006)
Physiol Rev
86, 967-1008
| Abstract »
| Full Text »
| PDF »
- TPX2 is required for postmitotic nuclear assembly in cell-free Xenopus laevis egg extracts.
- L. L. O'Brien and C. Wiese (2006)
J. Cell Biol.
173, 685-694
| Abstract »
| Full Text »
| PDF »
- Label-free Semiquantitative Peptide Feature Profiling of Human Breast Cancer and Breast Disease Sera via Two-dimensional Liquid Chromatography-Mass Spectrometry.
- Q. C. Ru, L. A. Zhu, J. Silberman, and C. D. Shriver (2006)
Mol. Cell. Proteomics
5, 1095-1104
| Abstract »
| Full Text »
| PDF »
- NDC1: a crucial membrane-integral nucleoporin of metazoan nuclear pore complexes.
- F. Stavru, B. B. Hulsmann, A. Spang, E. Hartmann, V. C. Cordes, and D. Gorlich (2006)
J. Cell Biol.
173, 509-519
| Abstract »
| Full Text »
| PDF »
- Direct membrane protein-DNA interactions required early in nuclear envelope assembly.
- S. Ulbert, M. Platani, S. Boue, and I. W. Mattaj (2006)
J. Cell Biol.
173, 469-476
| Abstract »
| Full Text »
| PDF »
- SUN1 Interacts with Nuclear Lamin A and Cytoplasmic Nesprins To Provide a Physical Connection between the Nuclear Lamina and the Cytoskeleton.
- F. Haque, D. J. Lloyd, D. T. Smallwood, C. L. Dent, C. M. Shanahan, A. M. Fry, R. C. Trembath, and S. Shackleton (2006)
Mol. Cell. Biol.
26, 3738-3751
| Abstract »
| Full Text »
| PDF »
- Identification and Functional Characterization of a Presqualene Diphosphate Phosphatase.
- K. Fukunaga, M. Arita, M. Takahashi, A. J. Morris, M. Pfeffer, and B. D. Levy (2006)
J. Biol. Chem.
281, 9490-9497
| Abstract »
| Full Text »
| PDF »
- Coupling of the nucleus and cytoplasm: role of the LINC complex.
- M. Crisp, Q. Liu, K. Roux, J.B. Rattner, C. Shanahan, B. Burke, P. D. Stahl, and D. Hodzic (2006)
J. Cell Biol.
172, 41-53
| Abstract »
| Full Text »
| PDF »
- LEM2 is a novel MAN1-related inner nuclear membrane protein associated with A-type lamins.
- A. Brachner, S. Reipert, R. Foisner, and J. Gotzmann (2005)
J. Cell Sci.
118, 5797-5810
| Abstract »
| Full Text »
| PDF »
- Cell Surface Labeling and Mass Spectrometry Reveal Diversity of Cell Surface Markers and Signaling Molecules Expressed in Undifferentiated Mouse Embryonic Stem Cells.
- K. Nunomura, K. Nagano, C. Itagaki, M. Taoka, N. Okamura, Y. Yamauchi, S. Sugano, N. Takahashi, T. Izumi, and T. Isobe (2005)
Mol. Cell. Proteomics
4, 1968-1976
| Abstract »
| Full Text »
| PDF »
- Characterization of Mouse Spleen Cells by Subtractive Proteomics.
- F. J. Dieguez-Acuna, S. A. Gerber, S. Kodama, J. E. Elias, S. A. Beausoleil, D. Faustman, and S. P. Gygi (2005)
Mol. Cell. Proteomics
4, 1459-1470
| Abstract »
| Full Text »
| PDF »
- Systems biology in the cell nucleus.
- S. Gorski and T. Misteli (2005)
J. Cell Sci.
118, 4083-4092
| Abstract »
| Full Text »
| PDF »
- The nuclear-envelope protein and transcriptional repressor LAP2{beta} interacts with HDAC3 at the nuclear periphery, and induces histone H4 deacetylation.
- R. Somech, S. Shaklai, O. Geller, N. Amariglio, A. J. Simon, G. Rechavi, and E. N. Gal-Yam (2005)
J. Cell Sci.
118, 4017-4025
| Abstract »
| Full Text »
| PDF »
- The inner nuclear membrane protein Sun1 mediates the anchorage of Nesprin-2 to the nuclear envelope.
- V.C. Padmakumar, T. Libotte, W. Lu, H. Zaim, S. Abraham, A. A. Noegel, J. Gotzmann, R. Foisner, and I. Karakesisoglou (2005)
J. Cell Sci.
118, 3419-3430
| Abstract »
| Full Text »
| PDF »
- Compound heterozygous ZMPSTE24 mutations reduce prelamin A processing and result in a severe progeroid phenotype.
- S Shackleton, D T Smallwood, P Clayton, L C Wilson, A K Agarwal, A Garg, and R C Trembath (2005)
J. Med. Genet.
42, e36
| Full Text »
| PDF »
- Vertebrate Nup53 Interacts with the Nuclear Lamina and Is Required for the Assembly of a Nup93-containing Complex.
- L. A. Hawryluk-Gara, E. K. Shibuya, and R. W. Wozniak (2005)
Mol. Biol. Cell
16, 2382-2394
| Abstract »
| Full Text »
| PDF »
- The AAA+ protein torsinA interacts with a conserved domain present in LAP1 and a novel ER protein.
- R. E. Goodchild and W. T. Dauer (2005)
J. Cell Biol.
168, 855-862
| Abstract »
| Full Text »
| PDF »
- Analysis of the Localization and Topology of Nurim, a Polytopic Protein Tightly Associated with the Inner Nuclear Membrane.
- H. Hofemeister and P. O'Hare (2005)
J. Biol. Chem.
280, 2512-2521
| Abstract »
| Full Text »
| PDF »
- Energy- and temperature-dependent transport of integral proteins to the inner nuclear membrane via the nuclear pore.
- T. Ohba, E. C. Schirmer, T. Nishimoto, and L. Gerace (2004)
J. Cell Biol.
167, 1051-1062
| Abstract »
| Full Text »
| PDF »
- The Nuclear Envelope and Human Disease.
- A. Muchir and H. J. Worman (2004)
Physiology
19, 309-314
| Abstract »
| Full Text »
| PDF »
- Invited Review: Toxicoproteomics: Proteomics Applied to Toxicology and Pathology.
- B. A. Wetmore and B. A. Merrick (2004)
Toxicol Pathol
32, 619-642
| Abstract »
| PDF »
- Proteomic Characterization of Postmortem Amyloid Plaques Isolated by Laser Capture Microdissection.
- L. Liao, D. Cheng, J. Wang, D. M. Duong, T. G. Losik, M. Gearing, H. D. Rees, J. J. Lah, A. I. Levey, and J. Peng (2004)
J. Biol. Chem.
279, 37061-37068
| Abstract »
| Full Text »
| PDF »
- Proteomic Analysis of Interchromatin Granule Clusters.
- N. Saitoh, C. S. Spahr, S. D. Patterson, P. Bubulya, A. F. Neuwald, and D. L. Spector (2004)
Mol. Biol. Cell
15, 3876-3890
| Abstract »
| Full Text »
| PDF »
- TorsinA and torsion dystonia: Unraveling the architecture of the nuclear envelope.
- L. Gerace (2004)
PNAS
101, 8839-8840
| Full Text »
| PDF »
- Sun2 Is a Novel Mammalian Inner Nuclear Membrane Protein.
- D. M. Hodzic, D. B. Yeater, L. Bengtsson, H. Otto, and P. D. Stahl (2004)
J. Biol. Chem.
279, 25805-25812
| Abstract »
| Full Text »
| PDF »
- Organellar Proteomics Reveals Golgi Arginine Dimethylation.
- C. C. Wu, M. J. MacCoss, G. Mardones, C. Finnigan, S. Mogelsvang, J. R. Yates III, and K. E. Howell (2004)
Mol. Biol. Cell
15, 2907-2919
| Abstract »
| Full Text »
| PDF »
- From The Cover: TorsinA in the nuclear envelope.
- T. V. Naismith, J. E. Heuser, X. O. Breakefield, and P. I. Hanson (2004)
PNAS
101, 7612-7617
| Abstract »
| Full Text »
| PDF »
- Accumulation of {beta}m, a structural member of X,K-ATPase {beta}-subunit family, in nuclear envelopes of perinatal myocytes.
- H. Zhao, N. B. Pestov, T. V. Korneenko, M. I. Shakhparonov, and N. N. Modyanov (2004)
Am J Physiol Cell Physiol
286, C757-C767
| Abstract »
| Full Text »
| PDF »
- Aberrant Cellular Behavior of Mutant TorsinA Implicates Nuclear Envelope Dysfunction in DYT1 Dystonia.
- P. Gonzalez-Alegre and H. L. Paulson (2004)
J. Neurosci.
24, 2593-2601
| Abstract »
| Full Text »
| PDF »
- Proteins that bind A-type lamins: integrating isolated clues.
- M. S. Zastrow, S. Vlcek, and K. L. Wilson (2004)
J. Cell Sci.
117, 979-987
| Abstract »
| Full Text »
| PDF »
- Mislocalization to the nuclear envelope: An effect of the dystonia-causing torsinA mutation.
- R. E. Goodchild and W. T. Dauer (2004)
PNAS
101, 847-852
| Abstract »
| Full Text »
| PDF »
|
|