Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Instruction of Translating Ribosome by Nascent Peptide
Feng Gong,Charles Yanofsky*
Expression of the tryptophanase operon of
Escherichia coli is regulated by catabolite repression and
tryptophan-induced transcriptionantitermination. An induction site
activated by L-tryptophan iscreated in the translating
ribosome during synthesis of TnaC,the 24-residue leader peptide.
Replacing the tnaC stop codon witha tryptophan codon allows
tryptophan-charged tryptophan transferRNA to substitute for tryptophan
as inducer. This suggests thatthe ribosomal A site occupied by the
tryptophanyl moiety of thecharged transfer RNA is the site of
induction. The location oftryptophan-12 of nascent TnaC in the peptide
exit tunnel was crucialfor induction. These results show that a
nascent peptide sequencecan influence translation continuation and
termination withina translating ribosome.
Department of Biological Sciences, Stanford University, Stanford,
CA 94305, USA.
*
To whom correspondence should be addressed. E-mail:
yanofsky{at}cmgm.stanford.edu
H. Onouchi, Y. Haraguchi, M. Nakamoto, D. Kawasaki, Y. Nagami-Yamashita, K. Murota, A. Kezuka-Hosomi, Y. Chiba, and S. Naito (2008)
Plant Cell Physiol.
49, 549-556
|Abstract »|Full Text »|PDF »
RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria.
Ribosomal Features Essential for tna Operon Induction: Tryptophan Binding at the Peptidyl Transferase Center.
L. R. Cruz-Vera, A. New, C. Squires, and C. Yanofsky (2007)
J. Bacteriol.
189, 3140-3146
|Abstract »|Full Text »|PDF »
Ribosome Recycling Factor and Release Factor 3 Action Promotes TnaC-Peptidyl-tRNA Dropoff and Relieves Ribosome Stalling during Tryptophan Induction of tna Operon Expression in Escherichia coli.
M. Gong, L. R. Cruz-Vera, and C. Yanofsky (2007)
J. Bacteriol.
189, 3147-3155
|Abstract »|Full Text »|PDF »
Translational repression of mouse mu opioid receptor expression via leaky scanning.
K. Y. Song, C. K. Hwang, C. S. Kim, H. S. Choi, P.-Y. Law, L.-N. Wei, and H. H. Loh (2007)
Nucleic Acids Res.
35, 1501-1513
|Abstract »|Full Text »|PDF »
Translation of the poly(A) tail plays crucial roles in nonstop mRNA surveillance via translation repression and protein destabilization by proteasome in yeast.
S. Ito-Harashima, K. Kuroha, T. Tatematsu, and T. Inada (2007)
Genes & Dev.
21, 519-524
|Abstract »|Full Text »|PDF »
Downstream control of upstream open reading frames.
M. S. Sachs and A. P. Geballe (2006)
Genes & Dev.
20, 915-921
|Full Text »|PDF »
Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide.
Nascent peptide-mediated translation elongation arrest coupled with mRNA degradation in the CGS1 gene of Arabidopsis.
H. Onouchi, Y. Nagami, Y. Haraguchi, M. Nakamoto, Y. Nishimura, R. Sakurai, N. Nagao, D. Kawasaki, Y. Kadokura, and S. Naito (2005)
Genes & Dev.
19, 1799-1810
|Abstract »|Full Text »|PDF »
Translation of the first upstream ORF in the hepatitis B virus pregenomic RNA modulates translation at the core and polymerase initiation codons.
A. Chen, Y. F. Kao, and C. M. Brown (2005)
Nucleic Acids Res.
33, 1169-1181
|Abstract »|Full Text »|PDF »
pH Regulates Genes for Flagellar Motility, Catabolism, and Oxidative Stress in Escherichia coli K-12.
L. M. Maurer, E. Yohannes, S. S. Bondurant, M. Radmacher, and J. L. Slonczewski (2005)
J. Bacteriol.
187, 304-319
|Abstract »|Full Text »|PDF »
Ribosome Stalling during Translation Elongation Induces Cleavage of mRNA Being Translated in Escherichia coli.
T. Sunohara, K. Jojima, H. Tagami, T. Inada, and H. Aiba (2004)
J. Biol. Chem.
279, 15368-15375
|Abstract »|Full Text »|PDF »
A nascent polypeptide domain that can regulate translation elongation.
Translational regulation of BACE-1 expression in neuronal and non-neuronal cells.
D. De Pietri Tonelli, M. Mihailovich, A. Di Cesare, F. Codazzi, F. Grohovaz, and D. Zacchetti (2004)
Nucleic Acids Res.
32, 1808-1817
|Abstract »|Full Text »|PDF »
Factors That Influence Selection of Coding Resumption Sites in Translational Bypassing: MINIMAL CONVENTIONAL PEPTIDYL-tRNA:mRNA PAIRING CAN SUFFICE.
A. J. Herr, N. M. Wills, C. C. Nelson, R. F. Gesteland, and J. F. Atkins (2004)
J. Biol. Chem.
279, 11081-11087
|Abstract »|Full Text »|PDF »
Nascent-peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA.
T. SUNOHARA, K. JOJIMA, Y. YAMAMOTO, T. INADA, and H. AIBA (2004)
RNA
10, 378-386
|Abstract »|Full Text »|PDF »
A Transcriptional Pause Synchronizes Translation with Transcription in the Tryptophanase Operon Leader Region.