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Conformational Dynamics in a Dipeptide After Single-Mode Vibrational Excitation
Brian C. Dian,Asier Longarte,Timothy S. Zwier*
The dynamics of conformational isomerization are
explored in a methyl-capped dipeptide, N-acetyl-tryptophan
methyl amide (NATMA),using infrared-ultraviolet (IR-UV)
hole-filling and IR-inducedpopulation transfer spectroscopies. IR
radiation selectively excitesindividual NH stretch vibrational
fundamentals of single conformationsof the molecule in the early
portions of a gas-phase expansion,and then this excited population is
collisionally recooled intoits conformational minima for subsequent
conformation-specificdetection. Efficient isomerization is induced by
the IR excitationthat redistributes population between the same
conformations thathave population in the absence of IR excitation. The
quantum yieldsfor transfer of the population into the various
conformationalminima depend uniquely on which conformation is excited
and onwhich NH stretch vibration is excited within a given
conformation.
Department of Chemistry, Purdue University, West Lafayette, IN
47907-1393, USA.
*
To whom correspondence should be addressed. E-mail:
zwier{at}purdue.edu
Laser-Initiated Shuttling of a Water Molecule Between H-Bonding Sites.
J. R. Clarkson, E. Baquero, V. A. Shubert, E. M. Myshakin, K. D. Jordan, and T. S. Zwier (2005)
Science
307, 1443-1446
|Abstract »|Full Text »|PDF »
MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids.
Z. W. Cao, Y. Xue, L. Y. Han, B. Xie, H. Zhou, C. J. Zheng, H. H. Lin, and Y. Z. Chen (2004)
Nucleic Acids Res.
32, W679-W685
|Abstract »|Full Text »|PDF »
Vibrational Transition Moment Angles in Isolated Biomolecules: A Structural Tool.