Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 22 March 2002: Vol. 295. no. 5563, pp. 2270 - 2273 DOI: 10.1126/science.1068105
|
|
Reports
Rates of Evolution in Ancient DNA from Adélie Penguins
D. M. Lambert,1*
P. A. Ritchie,1
C. D. Millar,3
B. Holland,2
A. J. Drummond,3
C. Baroni4
Well-preserved subfossil bones of Adélie penguins,
Pygoscelis adeliae, underlie existing and abandoned nesting
colonies in Antarctica. These bones, dating back to more than 7000 years before the present, harbor some of the best-preserved ancient DNA
yet discovered. From 96 radiocarbon-aged bones, we report large numbers of mitochondrial haplotypes, some of which appear to be extinct, given
the 380 living birds sampled. We demonstrate DNA sequence evolution
through time and estimate the rate of evolution of the hypervariable
region I using a Markov chain Monte Carlo integration and a
least-squares regression analysis. Our calculated rates of evolution
are approximately two to seven times higher than previous indirect
phylogenetic estimates.
1 Institute of Molecular BioSciences,
2 Institute of Fundamental Sciences, Massey
University, Private Bag 11-222, Palmerston North, New Zealand.
3 School of Biological Sciences, University of
Auckland, Private Bag 92019, Auckland, New Zealand.
4 Dipartmento Scienze della Terra, Università
di Pisa, and Consiglio Nazionale Ricerche, Centro Studio Geologia
Strutturale, Via Santa Maria, 53, 56126, Pisa, Italy.
*
To whom correspondence should be addressed. E-mail:
D.M.Lambert{at}massey.ac.nz
These authors contributed equally to this work.
Allan Wilson Centre for Molecular Ecology and
Evolution, New Zealand.
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales.
- G. I. Peterson and J. Masel (2009)
Mol. Biol. Evol.
26, 2595-2603
| Abstract »
| Full Text »
| PDF »
- Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times.
- S. Y. W. Ho and M. J. Phillips (2009)
Syst Biol
| Full Text »
| PDF »
- Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?.
- R. Debruyne and H. N. Poinar (2009)
Syst Biol
| Full Text »
| PDF »
- Modelling mitochondrial site polymorphisms to infer the number of segregating units and mutation rate.
- M. D. Hendy, M. D. Woodhams, and A. Dodd (2009)
Biol Lett
5, 397-400
| Abstract »
| Full Text »
| PDF »
- Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates.
- B. M. Henn, C. R. Gignoux, M. W. Feldman, and J. L. Mountain (2009)
Mol. Biol. Evol.
26, 217-230
| Abstract »
| Full Text »
| PDF »
- The perils of plenty: what are we going to do with all these genes?.
- A. Rodrigo, F. Bertels, J. Heled, R. Noder, H. Shearman, and P. Tsai (2008)
Phil Trans R Soc B
363, 3893-3902
| Abstract »
| Full Text »
| PDF »
- Bayesian Inference of Errors in Ancient DNA Caused by Postmortem Degradation.
- L. M. Mateiu and B. H. Rannala (2008)
Mol. Biol. Evol.
25, 1503-1511
| Abstract »
| Full Text »
| PDF »
- Geological Dates and Molecular Rates: Fish DNA Sheds Light on Time Dependency.
- C. P. Burridge, D. Craw, D. Fletcher, and J. M. Waters (2008)
Mol. Biol. Evol.
25, 624-633
| Abstract »
| Full Text »
| PDF »
- Evolution and biodiversity of Antarctic organisms: a molecular perspective.
- A. D. Rogers (2007)
Phil Trans R Soc B
362, 2191-2214
| Abstract »
| Full Text »
| PDF »
- Elevated substitution rates estimated from ancient DNA sequences.
- S. Y.W Ho, S.-O. Kolokotronis, and R. G Allaby (2007)
Biol Lett
3, 702-705
| Abstract »
| Full Text »
| PDF »
- Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco.
- B. Mila, J. E McCormack, G. Castaneda, R. K Wayne, and T. B Smith (2007)
Proc R Soc B
274, 2653-2660
| Abstract »
| Full Text »
| PDF »
- Evidence for Time Dependency of Molecular Rate Estimates.
- S. Y. W. Ho, B. Shapiro, M. J. Phillips, A. Cooper, and A. J. Drummond (2007)
Syst Biol
56, 515-522
| Full Text »
| PDF »
- Geological Dates and Molecular Rates: Rapid Divergence of Rivers and Their Biotas.
- J. M. Waters, D. L. Rowe, S. Apte, T. M. King, G. P. Wallis, L. Anderson, R. J. Norris, D. Craw, and C. P. Burridge (2007)
Syst Biol
56, 271-282
| Abstract »
| Full Text »
| PDF »
- Alarm Bells for the Molecular Clock? No Support for Ho et al.'s Model of Time-Dependent Molecular Rate Estimates.
- B. C. Emerson (2007)
Syst Biol
56, 337-345
| Full Text »
| PDF »
- A 45,000 yr record of Adelie penguins and climate change in the Ross Sea, Antarctica.
- S. D. Emslie, L. Coats, and K. Licht (2007)
Geology
35, 61-64
| Abstract »
| Full Text »
| PDF »
- Estimating a Nucleotide Substitution Rate for Maize from Polymorphism at a Major Domestication Locus.
- R. M. Clark, S. Tavare, and J. Doebley (2005)
Mol. Biol. Evol.
22, 2304-2312
| Abstract »
| Full Text »
| PDF »
- Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times.
- S. Y. W. Ho, M. J. Phillips, A. Cooper, and A. J. Drummond (2005)
Mol. Biol. Evol.
22, 1561-1568
| Abstract »
| Full Text »
| PDF »
- Understanding Differences Between Phylogenetic and Pedigree-Derived mtDNA Mutation Rate: A Model Using Families from the Azores Islands (Portugal).
- C. Santos, R. Montiel, B. Sierra, C. Bettencourt, E. Fernandez, L. Alvarez, M. Lima, A. Abade, and M. P. Aluja (2005)
Mol. Biol. Evol.
22, 1490-1505
| Abstract »
| Full Text »
| PDF »
- Is a Large-Scale DNA-Based Inventory of Ancient Life Possible?.
- D. M. Lambert, A. Baker, L. Huynen, O. Haddrath, P. D. N. Hebert, and C. D. Millar (2005)
J. Hered.
96, 279-284
| Abstract »
| Full Text »
| PDF »
- Serial SimCoal: A population genetics model for data from multiple populations and points in time.
- C. N. K. Anderson, U. Ramakrishnan, Y. L. Chan, and E. A. Hadly (2005)
Bioinformatics
21, 1733-1734
| Abstract »
| Full Text »
| PDF »
- Beringian Paleoecology Inferred from Permafrost-Preserved Fungal DNA.
- M. C. Lydolph, J. Jacobsen, P. Arctander, M. T. P. Gilbert, D. A. Gilichinsky, A. J. Hansen, E. Willerslev, and L. Lange (2005)
Appl. Envir. Microbiol.
71, 1012-1017
| Abstract »
| Full Text »
| PDF »
- Rise and Fall of the Beringian Steppe Bison.
- B. Shapiro, A. J. Drummond, A. Rambaut, M. C. Wilson, P. E. Matheus, A. V. Sher, O. G. Pybus, M. T. P. Gilbert, I. Barnes, J. Binladen, et al. (2004)
Science
306, 1561-1565
| Abstract »
| Full Text »
| PDF »
- Ancient DNA Enables Timing of the Pleistocene Origin and Holocene Expansion of Two Adelie Penguin Lineages in Antarctica.
- P. A. Ritchie, C. D. Millar, G. C. Gibb, C. Baroni, and D. M. Lambert (2004)
Mol. Biol. Evol.
21, 240-248
| Abstract »
| Full Text »
| PDF »
- Inferring Evolutionary Rates Using Serially Sampled Sequences from Several Populations.
- A. G. Rodrigo, M. Goode, R. Forsberg, H. A. Ross, and A. Drummond (2003)
Mol. Biol. Evol.
20, 2010-2018
| Abstract »
| Full Text »
| PDF »
- Epidemiology, Genetic Diversity, and Evolution of Endemic Feline Immunodeficiency Virus in a Population of Wild Cougars.
- R. Biek, A. G. Rodrigo, D. Holley, A. Drummond, C. R. Anderson Jr., H. A. Ross, and M. Poss (2003)
J. Virol.
77, 9578-9589
| Abstract »
| Full Text »
| PDF »
- Accelerated Protein Evolution and Origins of Human-Specific Features: FOXP2 as an Example.
- J. Zhang, D. M. Webb, and O. Podlaha (2002)
Genetics
162, 1825-1835
| Abstract »
| Full Text »
| PDF »
- Estimating Mutation Parameters, Population History and Genealogy Simultaneously From Temporally Spaced Sequence Data.
- A. J. Drummond, G. K. Nicholls, A. G. Rodrigo, and W. Solomon (2002)
Genetics
161, 1307-1320
| Abstract »
| Full Text »
| PDF »
|
|