Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 22 March 2002:
Vol. 295. no. 5563, pp. 2270 - 2273
DOI: 10.1126/science.1068105

Reports

Rates of Evolution in Ancient DNA from Adélie Penguins

D. M. Lambert,1*dagger ddagger P. A. Ritchie,1dagger ddagger C. D. Millar,3ddagger B. Holland,2 A. J. Drummond,3 C. Baroni4

Well-preserved subfossil bones of Adélie penguins, Pygoscelis adeliae, underlie existing and abandoned nesting colonies in Antarctica. These bones, dating back to more than 7000 years before the present, harbor some of the best-preserved ancient DNA yet discovered. From 96 radiocarbon-aged bones, we report large numbers of mitochondrial haplotypes, some of which appear to be extinct, given the 380 living birds sampled. We demonstrate DNA sequence evolution through time and estimate the rate of evolution of the hypervariable region I using a Markov chain Monte Carlo integration and a least-squares regression analysis. Our calculated rates of evolution are approximately two to seven times higher than previous indirect phylogenetic estimates.

1 Institute of Molecular BioSciences,
2 Institute of Fundamental Sciences, Massey University, Private Bag 11-222, Palmerston North, New Zealand.
3 School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand.
4 Dipartmento Scienze della Terra, Università di Pisa, and Consiglio Nazionale Ricerche, Centro Studio Geologia Strutturale, Via Santa Maria, 53, 56126, Pisa, Italy.
*   To whom correspondence should be addressed. E-mail: D.M.Lambert{at}massey.ac.nz

dagger    These authors contributed equally to this work.

ddagger    Allan Wilson Centre for Molecular Ecology and Evolution, New Zealand.


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales.
G. I. Peterson and J. Masel (2009)
Mol. Biol. Evol. 26, 2595-2603
   Abstract »    Full Text »    PDF »
Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times.
S. Y. W. Ho and M. J. Phillips (2009)
Syst Biol
   Full Text »    PDF »
Time Dependency of Molecular Rates in Ancient DNA Data Sets, A Sampling Artifact?.
R. Debruyne and H. N. Poinar (2009)
Syst Biol
   Full Text »    PDF »
Modelling mitochondrial site polymorphisms to infer the number of segregating units and mutation rate.
M. D. Hendy, M. D. Woodhams, and A. Dodd (2009)
Biol Lett 5, 397-400
   Abstract »    Full Text »    PDF »
Characterizing the Time Dependency of Human Mitochondrial DNA Mutation Rate Estimates.
B. M. Henn, C. R. Gignoux, M. W. Feldman, and J. L. Mountain (2009)
Mol. Biol. Evol. 26, 217-230
   Abstract »    Full Text »    PDF »
The perils of plenty: what are we going to do with all these genes?.
A. Rodrigo, F. Bertels, J. Heled, R. Noder, H. Shearman, and P. Tsai (2008)
Phil Trans R Soc B 363, 3893-3902
   Abstract »    Full Text »    PDF »
Bayesian Inference of Errors in Ancient DNA Caused by Postmortem Degradation.
L. M. Mateiu and B. H. Rannala (2008)
Mol. Biol. Evol. 25, 1503-1511
   Abstract »    Full Text »    PDF »
Geological Dates and Molecular Rates: Fish DNA Sheds Light on Time Dependency.
C. P. Burridge, D. Craw, D. Fletcher, and J. M. Waters (2008)
Mol. Biol. Evol. 25, 624-633
   Abstract »    Full Text »    PDF »
Evolution and biodiversity of Antarctic organisms: a molecular perspective.
A. D. Rogers (2007)
Phil Trans R Soc B 362, 2191-2214
   Abstract »    Full Text »    PDF »
Elevated substitution rates estimated from ancient DNA sequences.
S. Y.W Ho, S.-O. Kolokotronis, and R. G Allaby (2007)
Biol Lett 3, 702-705
   Abstract »    Full Text »    PDF »
Recent postglacial range expansion drives the rapid diversification of a songbird lineage in the genus Junco.
B. Mila, J. E McCormack, G. Castaneda, R. K Wayne, and T. B Smith (2007)
Proc R Soc B 274, 2653-2660
   Abstract »    Full Text »    PDF »
Evidence for Time Dependency of Molecular Rate Estimates.
S. Y. W. Ho, B. Shapiro, M. J. Phillips, A. Cooper, and A. J. Drummond (2007)
Syst Biol 56, 515-522
   Full Text »    PDF »
Geological Dates and Molecular Rates: Rapid Divergence of Rivers and Their Biotas.
J. M. Waters, D. L. Rowe, S. Apte, T. M. King, G. P. Wallis, L. Anderson, R. J. Norris, D. Craw, and C. P. Burridge (2007)
Syst Biol 56, 271-282
   Abstract »    Full Text »    PDF »
Alarm Bells for the Molecular Clock? No Support for Ho et al.'s Model of Time-Dependent Molecular Rate Estimates.
B. C. Emerson (2007)
Syst Biol 56, 337-345
   Full Text »    PDF »
A 45,000 yr record of Adelie penguins and climate change in the Ross Sea, Antarctica.
S. D. Emslie, L. Coats, and K. Licht (2007)
Geology 35, 61-64
   Abstract »    Full Text »    PDF »
Estimating a Nucleotide Substitution Rate for Maize from Polymorphism at a Major Domestication Locus.
R. M. Clark, S. Tavare, and J. Doebley (2005)
Mol. Biol. Evol. 22, 2304-2312
   Abstract »    Full Text »    PDF »
Time Dependency of Molecular Rate Estimates and Systematic Overestimation of Recent Divergence Times.
S. Y. W. Ho, M. J. Phillips, A. Cooper, and A. J. Drummond (2005)
Mol. Biol. Evol. 22, 1561-1568
   Abstract »    Full Text »    PDF »
Understanding Differences Between Phylogenetic and Pedigree-Derived mtDNA Mutation Rate: A Model Using Families from the Azores Islands (Portugal).
C. Santos, R. Montiel, B. Sierra, C. Bettencourt, E. Fernandez, L. Alvarez, M. Lima, A. Abade, and M. P. Aluja (2005)
Mol. Biol. Evol. 22, 1490-1505
   Abstract »    Full Text »    PDF »
Is a Large-Scale DNA-Based Inventory of Ancient Life Possible?.
D. M. Lambert, A. Baker, L. Huynen, O. Haddrath, P. D. N. Hebert, and C. D. Millar (2005)
J. Hered. 96, 279-284
   Abstract »    Full Text »    PDF »
Serial SimCoal: A population genetics model for data from multiple populations and points in time.
C. N. K. Anderson, U. Ramakrishnan, Y. L. Chan, and E. A. Hadly (2005)
Bioinformatics 21, 1733-1734
   Abstract »    Full Text »    PDF »
Beringian Paleoecology Inferred from Permafrost-Preserved Fungal DNA.
M. C. Lydolph, J. Jacobsen, P. Arctander, M. T. P. Gilbert, D. A. Gilichinsky, A. J. Hansen, E. Willerslev, and L. Lange (2005)
Appl. Envir. Microbiol. 71, 1012-1017
   Abstract »    Full Text »    PDF »
Rise and Fall of the Beringian Steppe Bison.
B. Shapiro, A. J. Drummond, A. Rambaut, M. C. Wilson, P. E. Matheus, A. V. Sher, O. G. Pybus, M. T. P. Gilbert, I. Barnes, J. Binladen, et al. (2004)
Science 306, 1561-1565
   Abstract »    Full Text »    PDF »
Ancient DNA Enables Timing of the Pleistocene Origin and Holocene Expansion of Two Adelie Penguin Lineages in Antarctica.
P. A. Ritchie, C. D. Millar, G. C. Gibb, C. Baroni, and D. M. Lambert (2004)
Mol. Biol. Evol. 21, 240-248
   Abstract »    Full Text »    PDF »
Inferring Evolutionary Rates Using Serially Sampled Sequences from Several Populations.
A. G. Rodrigo, M. Goode, R. Forsberg, H. A. Ross, and A. Drummond (2003)
Mol. Biol. Evol. 20, 2010-2018
   Abstract »    Full Text »    PDF »
Epidemiology, Genetic Diversity, and Evolution of Endemic Feline Immunodeficiency Virus in a Population of Wild Cougars.
R. Biek, A. G. Rodrigo, D. Holley, A. Drummond, C. R. Anderson Jr., H. A. Ross, and M. Poss (2003)
J. Virol. 77, 9578-9589
   Abstract »    Full Text »    PDF »
Accelerated Protein Evolution and Origins of Human-Specific Features: FOXP2 as an Example.
J. Zhang, D. M. Webb, and O. Podlaha (2002)
Genetics 162, 1825-1835
   Abstract »    Full Text »    PDF »
Estimating Mutation Parameters, Population History and Genealogy Simultaneously From Temporally Spaced Sequence Data.
A. J. Drummond, G. K. Nicholls, A. G. Rodrigo, and W. Solomon (2002)
Genetics 161, 1307-1320
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)