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Argonaute2, a Link Between Genetic and Biochemical Analyses of RNAi
Scott M. Hammond,12Sabrina Boettcher,1Amy A. Caudy,3Ryuji Kobayashi,1Gregory J. Hannon13*
Double-stranded RNA induces potent and specific gene
silencing through a process referred to as RNA interference (RNAi) orposttranscriptional gene silencing (PTGS). RNAi is mediated byRNA-induced silencing complex (RISC), a sequence-specific,
multicomponentnuclease that destroys messenger RNAs homologous to the
silencingtrigger. RISC is known to contain short RNAs (~22
nucleotides)derived from the double-stranded RNA trigger, but the
proteincomponents of this activity are unknown. Here, we report the
biochemicalpurification of the RNAi effector nuclease from cultured
Drosophilacells. The active fraction contains a
ribonucleoprotein complexof ~500 kilodaltons. Protein
microsequencing reveals that oneconstituent of this complex is a
member of the Argonaute familyof proteins, which are essential for
gene silencing in Caenorhabditiselegans,
Neurospora, and Arabidopsis. This observation
beginsthe process of forging links between genetic analysis of RNAifrom diverse organisms and the biochemical model of RNAi thatis
emerging from Drosophila in vitro systems.
1 Cold Spring Harbor Laboratory, Cold Spring
Harbor, NY 11724, USA.
2 Genetica Inc., 1 Kendall
Square, Building 600, Cambridge, MA 02138, USA.
3 Watson School of Biological Sciences, Cold Spring
Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
*
To whom correspondence should be addressed. E-mail:
hannon{at}cshl.org
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|Abstract »|Full Text »|PDF »
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|Abstract »|Full Text »|PDF »
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17, 1335-1338
|Full Text »|PDF »
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|Abstract »|Full Text »|PDF »
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|Abstract »|Full Text »|PDF »
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|Abstract »|Full Text »|PDF »
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