Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
ESF Genomics

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 10 August 2001:
Vol. 293. no. 5532, pp. 1070 - 1074
DOI: 10.1126/science.293.5532.1070
Prev | Table of Contents | Next

Review

DNA Methylation and Epigenetic Inheritance in Plants and Filamentous Fungi

Robert A. Martienssen,* Vincent Colot*dagger

Plants and filamentous fungi share with mammals enzymes responsible for DNA methylation. In these organisms, DNA methylation is associated with gene silencing and transposon control. However, plants and fungi differ from mammals in the genomic distribution, sequence specificity, and heritability of methylation. We consider the role that transposons play in establishing methylation patterns and the epigenetic consequences of their perturbation.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
*   To whom correspondence should be addressed. E-mail: martiens{at}cshl.org (R.A.M); colot{at}evry.inra.fr (V.C.).

dagger    Permanent address: Unité de Recherches en Génomique Végétale (INRA-CNRS), 2 rue Gaston Crémieux, CP 5708, 91057 Evry Cedex, France.

Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
RNAi of met1 Reduces DNA Methylation and Induces Genome-Specific Changes in Gene Expression and Centromeric Small RNA Accumulation in Arabidopsis Allopolyploids.
M. Chen, M. Ha, E. Lackey, J. Wang, and Z. J. Chen (2008)
Genetics 178, 1845-1858
   Abstract »    Full Text »    PDF »
High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression.
X. Li, X. Wang, K. He, Y. Ma, N. Su, H. He, V. Stolc, W. Tongprasit, W. Jin, J. Jiang, et al. (2008)
PLANT CELL 20, 259-276
   Abstract »    Full Text »    PDF »
Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets.
J.M. Ordway, J.A. Bedell, R.W. Citek, A. Nunberg, A. Garrido, R. Kendall, J.R. Stevens, D. Cao, R.W. Doerge, Y. Korshunova, et al. (2006)
Carcinogenesis 27, 2409-2423
   Abstract »    Full Text »    PDF »
Regulation of Seed Size by Hypomethylation of Maternal and Paternal Genomes.
W. Xiao, R. C. Brown, B. E. Lemmon, J. J. Harada, R. B. Goldberg, and R. L. Fischer (2006)
Plant Physiology 142, 1160-1168
   Abstract »    Full Text »    PDF »
DNA Methylation Is Critical for Arabidopsis Embryogenesis and Seed Viability.
W. Xiao, K. D. Custard, R. C. Brown, B. E. Lemmon, J. J. Harada, R. B. Goldberg, and R. L. Fischer (2006)
PLANT CELL 18, 805-814
   Abstract »    Full Text »    PDF »
The Arabidopsis genome: A foundation for plant research.
M. Bevan and S. Walsh (2005)
Genome Res. 15, 1632-1642
   Abstract »    Full Text »    PDF »
Differential methylation of genes and repeats in land plants.
P. D. Rabinowicz, R. Citek, M. A. Budiman, A. Nunberg, J. A. Bedell, N. Lakey, A. L. O'Shaughnessy, L. U. Nascimento, W. R. McCombie, and R. A. Martienssen (2005)
Genome Res. 15, 1431-1440
   Abstract »    Full Text »    PDF »
Theory for why dioecious plants have equal length sex chromosomes.
R. Gorelick (2005)
Am. J. Botany 92, 979-984
   Abstract »    Full Text »    PDF »
The post-transcriptional gene silencing machinery functions independently of DNA methylation to repress a LINE1-like retrotransposon in Neurospora crassa.
T. Nolan, L. Braccini, G. Azzalin, A. De Toni, G. Macino, and C. Cogoni (2005)
Nucleic Acids Res. 33, 1564-1573
   Abstract »    Full Text »    PDF »
XIST Repression in the Absence of DNMT1 and DNMT3B.
L. R. Vasques, R. Stabellini, F. Xue, X. C. Tian, M. Soukoyan, and L. V. Pereira (2005)
DNA Res 12, 373-378
   Abstract »    Full Text »    PDF »
BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis.
S. Takeda, Z. Tadele, I. Hofmann, A. V. Probst, K. J. Angelis, H. Kaya, T. Araki, T. Mengiste, O. M. Scheid, K.-i. Shibahara, et al. (2004)
Genes & Dev. 18, 782-793
   Abstract »    Full Text »    PDF »
RNA Silencing Genes Control de Novo DNA Methylation.
S. W.-L. Chan, D. Zilberman, Z. Xie, L. K. Johansen, J. C. Carrington, and S. E. Jacobsen (2004)
Science 303, 1336
   Full Text »    PDF »
Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals.
P. D. Rabinowicz, L. E. Palmer, B. P. May, M. T. Hemann, S. W. Lowe, W. R. McCombie, and R. A. Martienssen (2003)
Genome Res. 13, 2658-2664
   Abstract »    Full Text »    PDF »
Genetic Control of Developmental Changes Induced by Disruption of Arabidopsis Histone Deacetylase 1 (AtHD1) Expression.
L. Tian, J. Wang, M. P. Fong, M. Chen, H. Cao, S. B. Gelvin, and Z. J. Chen (2003)
Genetics 165, 399-409
   Abstract »    Full Text »    PDF »
FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets.
M. Komatsu, A. Chujo, Y. Nagato, K. Shimamoto, and J. Kyozuka (2003)
Development 130, 3841-3850
   Abstract »    Full Text »    PDF »
Transcription from an upstream promoter controls methylation signaling from an inverted repeat of endogenous genes in Arabidopsis.
S. Melquist and J. Bender (2003)
Genes & Dev. 17, 2036-2047
   Abstract »    Full Text »    PDF »
Definitions in Epigenetics.
(2003)
Ann. N.Y. Acad. Sci. 983, 321-328
   Full Text »    PDF »
Periodic DNA Methylation in Maize Nucleosomes and Demethylation by Environmental Stress.
N. Steward, M. Ito, Y. Yamaguchi, N. Koizumi, and H. Sano (2002)
J. Biol. Chem. 277, 37741-37746
   Abstract »    Full Text »    PDF »
Dependence of Heterochromatic Histone H3 Methylation Patterns on the Arabidopsis Gene DDM1.
A.-V. Gendrel, Z. Lippman, C. Yordan, V. Colot, and R. A. Martienssen (2002)
Science 297, 1871-1873
   Abstract »    Full Text »    PDF »
Regulation of Heterochromatic Silencing and Histone H3 Lysine-9 Methylation by RNAi.
T. A. Volpe, C. Kidner, I. M. Hall, G. Teng, S. I. S. Grewal, and R. A. Martienssen (2002)
Science 297, 1833-1837
   Abstract »    Full Text »    PDF »
The Control of Natural Variation in Cytosine Methylation in Arabidopsis.
N. C. Riddle and E. J. Richards (2002)
Genetics 162, 355-363
   Abstract »    Full Text »    PDF »
Tissue-specific silencing of a transgene in rice.
A. Kloti, X. He, I. Potrykus, T. Hohn, and J. Futterer (2002)
PNAS 99, 10881-10886
   Abstract »    Full Text »    PDF »
Genetic Analyses of DNA Methyltransferase Genes in Mouse Model System.
M. Okano and E. Li (2002)
J. Nutr. 132, 2462S-2465
   Abstract »    Full Text »    PDF »
Heterochromatin in Animals and Plants. Similarities and Differences.
Z. V. Avramova (2002)
Plant Physiology 129, 40-49
   Full Text »    PDF »
DNA methylation patterns and epigenetic memory.
A. Bird (2002)
Genes & Dev. 16, 6-21
   Full Text »    PDF »
Monoallelic Expression and Dominance Interactions in Anthers of Self-Incompatible Arabidopsis lyrata.
M. Kusaba, C.-W. Tung, M. E. Nasrallah, and J. B. Nasrallah (2002)
Plant Physiology 128, 17-20
   Full Text »    PDF »
Lashings of DNA methylation, forkfuls of chromatin remodeling.
R. R. Meehan, S. Pennings, and I. Stancheva (2001)
Genes & Dev. 15, 3231-3236
   Full Text »    PDF »
The Centromere Paradox: Stable Inheritance with Rapidly Evolving DNA.
S. Henikoff, K. Ahmad, and H. S. Malik (2001)
Science 293, 1098-1102
   Abstract »    Full Text »    PDF »


ADVERTISEMENT
Click Me!

ADVERTISEMENT
Click Me!

To Advertise     Find Products

Science. ISSN 0036-8075 (print), 1095-9203 (online)