Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Originally published in Science Express on 5 July 2001
Science 20 July 2001:
Vol. 293. no. 5529, pp. 510 - 514
DOI: 10.1126/science.1060698

Reports

Regulation of Clock and NPAS2 DNA Binding by the Redox State of NAD Cofactors

Jared Rutter,* Martin Reick,* Leeju C. Wu, Steven L. McKnightdagger

Clock:BMAL1 and NPAS2:BMAL1 are heterodimeric transcription factors that control gene expression as a function of the light-dark cycle. Although built to fluctuate at or near a 24-hour cycle, the clock can be entrained by light, activity, or food. Here we show that the DNA-binding activity of the Clock:BMAL1 and NPAS2:BMAL1 heterodimers is regulated by the redox state of nicotinamide adenine dinucleotide (NAD) cofactors in a purified system. The reduced forms of the redox cofactors, NAD(H) and NADP(H), strongly enhance DNA binding of the Clock:BMAL1 and NPAS2:BMAL1 heterodimers, whereas the oxidized forms inhibit. These observations raise the possibility that food, neuronal activity, or both may entrain the circadian clock by direct modulation of cellular redox state.

Department of Biochemistry, University of Texas-Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, Texas 75390-9152, USA.
*   These authors contributed equally to this work.

dagger    To whom correspondence should be addressed. E-mail: smckni{at}biochem.swmed.edu


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Diurnal variations in myocardial metabolism.
M. S. Bray and M. E. Young (2008)
Cardiovasc Res 79, 228-237
   Abstract »    Full Text »    PDF »
Nuclear Hormone Receptors for Heme: REV-ERB{alpha} and REV-ERB{beta} Are Ligand-Regulated Components of the Mammalian Clock.
T. P. Burris (2008)
Mol. Endocrinol. 22, 1509-1520
   Abstract »    Full Text »    PDF »
Probing the Relative Importance of Molecular Oscillations in the Circadian Clock.
X. Zheng and A. Sehgal (2008)
Genetics 178, 1147-1155
   Abstract »    Full Text »    PDF »
NADP Regulates the Yeast GAL Induction System.
P. R. Kumar, Y. Yu, R. Sternglanz, S. A. Johnston, and L. Joshua-Tor (2008)
Science 319, 1090-1092
   Abstract »    Full Text »    PDF »
FOXO and insulin signaling regulate sensitivity of the circadian clock to oxidative stress.
X. Zheng, Z. Yang, Z. Yue, J. D. Alvarez, and A. Sehgal (2007)
PNAS 104, 15899-15904
   Abstract »    Full Text »    PDF »
Peripheral Circadian Clocks in the Vasculature.
D. F. Reilly, E. J. Westgate, and G. A. FitzGerald (2007)
Arterioscler. Thromb. Vasc. Biol. 27, 1694-1705
   Abstract »    Full Text »    PDF »
The disruption of circadian clockwork in differentiating cells from rat reproductive tissues as identified by in vitro real-time monitoring system.
P.-J. He, M. Hirata, N. Yamauchi, S. Hashimoto, and M.-a. Hattori (2007)
J. Endocrinol. 193, 413-420
   Abstract »    Full Text »    PDF »
Daily restricted feeding resets the circadian clock in the suprachiasmatic nucleus of CS mice.
H. Abe, S. Honma, and K.-i. Honma (2007)
Am J Physiol Regulatory Integrative Comp Physiol 292, R607-R615
   Abstract »    Full Text »    PDF »
The Rhythms of Life: Circadian Output Pathways in Neurospora..
M. W. Vitalini, R. M. de Paula, W. D. Park, and D. Bell-Pedersen (2006)
J Biol Rhythms 21, 432-444
   Abstract »    PDF »
Properties, Entrainment, and Physiological Functions of Mammalian Peripheral Oscillators..
M. Stratmann and U. Schibler (2006)
J Biol Rhythms 21, 494-506
   Abstract »    PDF »
Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock.
N. B. Ivleva, T. Gao, A. C. LiWang, and S. S. Golden (2006)
PNAS 103, 17468-17473
   Abstract »    Full Text »    PDF »
The Kinetics of Transcriptomic Changes Induced by Cigarette Smoke in Rat Lungs Reveals a Specific Program of Defense, Inflammation, and Circadian Clock Gene Expression.
S. Gebel, B. Gerstmayer, P. Kuhl, J. Borlak, K. Meurrens, and T. Muller (2006)
Toxicol. Sci. 93, 422-431
   Abstract »    Full Text »    PDF »
NPAS2 as a transcriptional regulator of non-rapid eye movement sleep: Genotype and sex interactions.
P. Franken, C. A. Dudley, S. J. Estill, M. Barakat, R. Thomason, B. F. O'Hara, and S. L. McKnight (2006)
PNAS 103, 7118-7123
   Abstract »    Full Text »    PDF »
Time-restricted feeding entrains daily rhythms of energy metabolism in mice.
Y. Satoh, H. Kawai, N. Kudo, Y. Kawashima, and A. Mitsumoto (2006)
Am J Physiol Regulatory Integrative Comp Physiol 290, R1276-R1283
   Abstract »    Full Text »    PDF »
Transcriptional Regulation of Metabolism.
B. Desvergne, L. Michalik, and W. Wahli (2006)
Physiol Rev 86, 465-514
   Abstract »    Full Text »    PDF »
Effects of Food Deprivation on Locomotor Activity, Plasma Glucose, and Circadian Clock Resetting in Syrian Hamsters.
R. E. Mistlberger, I. C. Webb, M. M. Simon, D. Tse, and C. Su (2006)
J Biol Rhythms 21, 33-44
   Abstract »    PDF »
The circadian clock within the heart: potential influence on myocardial gene expression, metabolism, and function.
M. E. Young (2006)
Am J Physiol Heart Circ Physiol 290, H1-H16
   Abstract »    Full Text »    PDF »
Logic of the Yeast Metabolic Cycle: Temporal Compartmentalization of Cellular Processes.
B. P. Tu, A. Kudlicki, M. Rowicka, and S. L. McKnight (2005)
Science 310, 1152-1158
   Abstract »    Full Text »    PDF »
Redox-Dependent Transcriptional Regulation.
H. Liu, R. Colavitti, I. I. Rovira, and T. Finkel (2005)
Circ. Res. 97, 967-974
   Abstract »    Full Text »    PDF »
Temporal changes of multiple redox couples from proliferation to growth arrest in IEC-6 intestinal epithelial cells.
M. S. Attene-Ramos, K. Kitiphongspattana, K. Ishii-Schrade, and H. R. Gaskins (2005)
Am J Physiol Cell Physiol 289, C1220-C1228
   Abstract »    Full Text »    PDF »
Brain and muscle Arnt-like protein-1 (BMAL1), a component of the molecular clock, regulates adipogenesis.
S. Shimba, N. Ishii, Y. Ohta, T. Ohno, Y. Watabe, M. Hayashi, T. Wada, T. Aoyagi, and M. Tezuka (2005)
PNAS 102, 12071-12076
   Abstract »    Full Text »    PDF »
CO-dependent Activity-controlling Mechanism of Heme-containing CO-sensor Protein, Neuronal PAS Domain Protein 2.
T. Uchida, E. Sato, A. Sato, I. Sagami, T. Shimizu, and T. Kitagawa (2005)
J. Biol. Chem. 280, 21358-21368
   Abstract »    Full Text »    PDF »
Minireview: Cellular Redox State Regulates Hydroxysteroid Dehydrogenase Activity and Intracellular Hormone Potency.
A. K. Agarwal and R. J. Auchus (2005)
Endocrinology 146, 2531-2538
   Abstract »    Full Text »    PDF »
Obesity and Metabolic Syndrome in Circadian Clock Mutant Mice.
F. W. Turek, C. Joshu, A. Kohsaka, E. Lin, G. Ivanova, E. McDearmon, A. Laposky, S. Losee-Olson, A. Easton, D. R. Jensen, et al. (2005)
Science 308, 1043-1045
   Abstract »    Full Text »    PDF »
Differential regulation of voltage-gated K+ channels by oxidized and reduced pyridine nucleotide coenzymes.
S. M. Tipparaju, N. Saxena, S.-Q. Liu, R. Kumar, and A. Bhatnagar (2005)
Am J Physiol Cell Physiol 288, C366-C376
   Abstract »    Full Text »    PDF »
Thioredoxin-interacting protein deficiency disrupts the fasting-feeding metabolic transition.
S. S. Sheth, L. W. Castellani, S. Chari, C. Wagg, C. K. Thipphavong, J. S. Bodnar, P. Tontonoz, A. D. Attie, G. D. Lopaschuk, and A. J. Lusis (2005)
J. Lipid Res. 46, 123-134
   Abstract »    Full Text »    PDF »
The orphan receptor Rev-erb{alpha} gene is a target of the circadian clock pacemaker.
G. Triqueneaux, S. Thenot, T. Kakizawa, M. P Antoch, R. Safi, J. S Takahashi, F. Delaunay, and V. Laudet (2004)
J. Mol. Endocrinol. 33, 585-608
   Abstract »    Full Text »    PDF »
Modulation of the ligand binding properties of the transcription repressor NmrA by GATA-containing DNA and site-directed mutagenesis.
H. K. Lamb, J. Ren, A. Park, C. Johnson, K. Leslie, S. Cocklin, P. Thompson, C. Mee, A. Cooper, D. K. Stammers, et al. (2004)
Protein Sci. 13, 3127-3138
   Abstract »    Full Text »    PDF »
It's All in the Timing: Many Clocks, Many Outputs.
S. Panda and J. B. Hogenesch (2004)
J Biol Rhythms 19, 374-387
   Abstract »    PDF »
Clock Gene Evolution and Functional Divergence.
E. Tauber, K. S. Last, P. J.W. Olive, and C. P. Kyriacou (2004)
J Biol Rhythms 19, 445-458
   Abstract »    PDF »
Behavioral and regulatory abnormalities in mice deficient in the NPAS1 and NPAS3 transcription factors.
C. Erbel-Sieler, C. Dudley, Y. Zhou, X. Wu, S. J. Estill, T. Han, R. Diaz-Arrastia, E. W. Brunskill, S. S. Potter, and S. L. McKnight (2004)
PNAS 101, 13648-13653
   Abstract »    Full Text »    PDF »
Effect of feeding on peripheral circadian rhythms and behaviour in mammals.
H. Kobayashi, K. Oishi, S. Hanai, and N. Ishida (2004)
Genes Cells 9, 857-864
   Abstract »    Full Text »    PDF »
Hydrogen Photoproduction Is Attenuated by Disruption of an Isoamylase Gene in Chlamydomonas reinhardtii.
M. C. Posewitz, S. L. Smolinski, S. Kanakagiri, A. Melis, M. Seibert, and M. L. Ghirardi (2004)
PLANT CELL 16, 2151-2163
   Abstract »    Full Text »    PDF »
CtBP Contributes Quantitatively to Knirps Repression Activity in an NAD Binding-Dependent Manner.
M. Sutrias-Grau and D. N. Arnosti (2004)
Mol. Cell. Biol. 24, 5953-5966
   Abstract »    Full Text »    PDF »
Roles of Heme Axial Ligands in the Regulation of CO Binding to CooA.
T. Yamashita, Y. Hoashi, K. Watanabe, Y. Tomisugi, Y. Ishikawa, and T. Uno (2004)
J. Biol. Chem. 279, 21394-21400
   Abstract »    Full Text »    PDF »
An ultradian clock shapes genome expression in yeast.
M. W. Young (2004)
PNAS 101, 1118-1119
   Full Text »    PDF »
Signal transduction by heme-containing PAS-domain proteins.
M.-A. Gilles-Gonzalez and G. Gonzalez (2004)
J Appl Physiol 96, 774-783
   Abstract »    Full Text »    PDF »
Drosophila doubletime Mutations Which either Shorten or Lengthen the Period of Circadian Rhythms Decrease the Protein Kinase Activity of Casein Kinase I.
F. Preuss, J.-Y. Fan, M. Kalive, S. Bao, E. Schuenemann, E. S. Bjes, and J. L. Price (2004)
Mol. Cell. Biol. 24, 886-898
   Abstract »    Full Text »    PDF »
NADH augments blood flow in physiologically activated retina and visual cortex.
Y. Ido, K. Chang, and J. R. Williamson (2004)
PNAS 101, 653-658
   Abstract »    Full Text »    PDF »
Molecular Mechanism of Mammalian Circadian Clock.
Y. Isojima, N. Okumura, and K. Nagai (2003)
J. Biochem. 134, 777-784
   Abstract »    Full Text »    PDF »
Mammalian Cultured Cells as a Model System of Peripheral Circadian Clocks.
Y. Tsuchiya and E. Nishida (2003)
J. Biochem. 134, 785-790
   Abstract »    Full Text »    PDF »
Genome-wide Expression Analysis of Mouse Liver Reveals CLOCK-regulated Circadian Output Genes.
K. Oishi, K. Miyazaki, K. Kadota, R. Kikuno, T. Nagase, G.-i. Atsumi, N. Ohkura, T. Azama, M. Mesaki, S. Yukimasa, et al. (2003)
J. Biol. Chem. 278, 41519-41527
   Abstract »    Full Text »    PDF »
NAD+-Dependent Deacetylase Hst1p Controls Biosynthesis and Cellular NAD+ Levels in Saccharomyces cerevisiae.
A. Bedalov, M. Hirao, J. Posakony, M. Nelson, and J. A. Simon (2003)
Mol. Cell. Biol. 23, 7044-7054
   Abstract »    Full Text »    PDF »
Rhythmic expression of clock and clock-controlled genes in the rat oviduct.
D.J. Kennaway, T.J. Varcoe, and V.J. Mau (2003)
Mol. Hum. Reprod. 9, 503-507
   Abstract »    Full Text »    PDF »
The Negative Transcriptional Regulator NmrA Discriminates between Oxidized and Reduced Dinucleotides.
H. K. Lamb, K. Leslie, A. L. Dodds, M. Nutley, A. Cooper, C. Johnson, P. Thompson, D. K. Stammers, and A. R. Hawkins (2003)
J. Biol. Chem. 278, 32107-32114
   Abstract »    Full Text »    PDF »
A Globin in the Nucleus!.
E. Geuens, I. Brouns, D. Flamez, S. Dewilde, J.-P. Timmermans, and L. Moens (2003)
J. Biol. Chem. 278, 30417-30420
   Abstract »    Full Text »    PDF »
Two-peaked Synchronization in Day/Night Expression Rhythms of the Fibrinogen Gene Cluster in the Mouse Liver.
E. Sakao, A. Ishihara, K. Horikawa, M. Akiyama, M. Arai, M. Kato, N. Seki, K. Fukunaga, A. Shimizu-Yabe, K. Iwase, et al. (2003)
J. Biol. Chem. 278, 30450-30457
   Abstract »    Full Text »    PDF »
Differential binding of NAD+ and NADH allows the transcriptional corepressor carboxyl-terminal binding protein to serve as a metabolic sensor.
C. C. Fjeld, W. T. Birdsong, and R. H. Goodman (2003)
PNAS 100, 9202-9207
   Abstract »    Full Text »    PDF »
Altered Patterns of Sleep and Behavioral Adaptability in NPAS2-Deficient Mice.
C. A. Dudley, C. Erbel-Sieler, S. J. Estill, M. Reick, P. Franken, S. Pitts, and S. L. McKnight (2003)
Science 301, 379-383
   Abstract »    Full Text »    PDF »
Circadian Rhythms: In the Loop at Last.
R. N. Van Gelder, E. D. Herzog, W. J. Schwartz, and P. H. Taghert (2003)
Science 300, 1534-1535
   Abstract »    Full Text »    PDF »
Peripheral Circadian Oscillators in Mammals: Time and Food.
U. Schibler, J. Ripperger, and S. A. Brown (2003)
J Biol Rhythms 18, 250-260
   Abstract »    PDF »
Adrenergic regulation of clock gene expression in mouse liver.
H. Terazono, T. Mutoh, S. Yamaguchi, M. Kobayashi, M. Akiyama, R. Udo, S. Ohdo, H. Okamura, and S. Shibata (2003)
PNAS 100, 6795-6800
   Abstract »    Full Text »    PDF »
Adenylate Kinase 1 Deficiency Induces Molecular and Structural Adaptations to Support Muscle Energy Metabolism.
E. Janssen, A. de Groof, M. Wijers, J. Fransen, P. P. Dzeja, A. Terzic, and B. Wieringa (2003)
J. Biol. Chem. 278, 12937-12945
   Abstract »    Full Text »    PDF »
ldpA Encodes an Iron-Sulfur Protein Involved in Light-Dependent Modulation of the Circadian Period in the Cyanobacterium Synechococcuselongatus PCC 7942.
M. Katayama, T. Kondo, J. Xiong, and S. S. Golden (2003)
J. Bacteriol. 185, 1415-1422
   Abstract »    Full Text »    PDF »
Redox signaling in the growth and development of colonial hydroids.
N. W. Blackstone (2003)
J. Exp. Biol. 206, 651-658
   Abstract »    Full Text »    PDF »
Gender Dimorphism in the Role of cycle (BMAL1) in Rest, Rest Regulation, and Longevity in Drosophila melanogaster.
J. C. Hendricks, S. Lu, K. Kume, J. C.-P. Yin, Z. Yang, and A. Sehgal (2003)
J Biol Rhythms 18, 12-25
   Abstract »    PDF »
NPAS2: A Gas-Responsive Transcription Factor.
E. M. Dioum, J. Rutter, J. R. Tuckerman, G. Gonzalez, M.-A. Gilles-Gonzalez, and S. L. McKnight (2002)
Science 298, 2385-2387
   Abstract »    Full Text »    PDF »
Glucose Down-regulates Per1 and Per2 mRNA Levels and Induces Circadian Gene Expression in Cultured Rat-1 Fibroblasts.
T. Hirota, T. Okano, K. Kokame, H. Shirotani-Ikejima, T. Miyata, and Y. Fukada (2002)
J. Biol. Chem. 277, 44244-44251
   Abstract »    Full Text »    PDF »
Keeping an Eye on the Time : The Cogan Lecture.
R. G. Foster (2002)
Invest. Ophthalmol. Vis. Sci. 43, 1286-1298
   Full Text »    PDF »
Maneuvering in the Complex Path from Genotype to Phenotype.
R. Strohman (2002)
Science 296, 701-703
   Abstract »    Full Text »    PDF »
Genome-wide Transcriptional Orchestration of Circadian Rhythms in Drosophila.
H. R. Ueda, A. Matsumoto, M. Kawamura, M. Iino, T. Tanimura, and S. Hashimoto (2002)
J. Biol. Chem. 277, 14048-14052
   Abstract »    Full Text »    PDF »
Regulation of cholesterol-7{alpha}-hydroxylase: BAREly missing a SHP.
R. A. Davis, J. H. Miyake, T. Y. Hui, and N. J. Spann (2002)
J. Lipid Res. 43, 533-543
   Abstract »    Full Text »    PDF »
Functional Genomics of Sleep and Circadian Rhythm: Invited Review: Regulation of mammalian circadian clock genes.
U. Albrecht (2002)
J Appl Physiol 92, 1348-1355
   Abstract »    Full Text »    PDF »
Functional Genomics of Sleep and Circadian Rhythm: Invited Review: A neural clockwork for encoding circadian time.
E. D. Herzog and W. J. Schwartz (2002)
J Appl Physiol 92, 401-408
   Abstract »    Full Text »    PDF »
Circadian Rhythms in Isolated Brain Regions.
M. Abe, E. D. Herzog, S. Yamazaki, M. Straume, H. Tei, Y. Sakaki, M. Menaker, and G. D. Block (2002)
J. Neurosci. 22, 350-356
   Abstract »    Full Text »    PDF »
Molecular Clock Mechanisms and Circadian Rhythms Intrinsic to the Heart.
M. A. Portman (2001)
Circ. Res. 89, 1084-1086
   Full Text »    PDF »
Dancing Together. Social Controls in Parasitic Plant Development.
W. J. Keyes, J. V. Taylor, R. P. Apkarian, and D. G. Lynn (2001)
Plant Physiology 127, 1508-1512
   Full Text »    PDF »
Smoking-Induced Vascular Disease: A New Twist on an Old Theme.
P. McNamara and G. A. FitzGerald (2001)
Circ. Res. 89, 563-565
   Full Text »    PDF »
Regulation of Corepressor Function by Nuclear NADH.
Q. Zhang, D. W. Piston, and R. H. Goodman (2002)
Science 295, 1895-1897
   Abstract »    Full Text »    PDF »
Intrinsic Diurnal Variations in Cardiac Metabolism and Contractile Function.
M. E. Young, P. Razeghi, A. M. Cedars, P. H. Guthrie, and H. Taegtmeyer (2001)
Circ. Res. 89, 1199-1208
   Abstract »    Full Text »    PDF »



ADVERTISEMENT
Click Me!

ADVERTISEMENT
Click Me!

To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)