Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Epigenetic Instability in ES Cells and Cloned Mice
David Humpherys,12*Kevin Eggan,12*Hidenori Akutsu,3*Konrad Hochedlinger,1William M. Rideout III,1Detlev Biniszkiewicz,1Ryuzo Yanagimachi,3Rudolf Jaenisch12
Cloning by nuclear transfer (NT) is an inefficient process in
which most clones die before birth and survivors often displaygrowth
abnormalities. In an effort to correlate gene expressionwith survival
and fetal overgrowth, we have examined imprintedgene expression in
both mice cloned by nuclear transfer and inthe embryonic stem (ES)
cell donor populations from which theywere derived. The epigenetic
state of the ES cell genome was foundto be extremely unstable.
Similarly, variation in imprinted geneexpression was observed in most
cloned mice, even in those derivedfrom ES cells of the same subclone.
Many of the animals survivedto adulthood despite widespread gene
dysregulation, indicatingthat mammalian development may be rather
tolerant to epigeneticaberrations of the genome. These data imply that
even apparentlynormal cloned animals may have subtle abnormalities in
gene expression.
1 Whitehead Institute for Biomedical Research,
2 Department of Biology, Massachusetts Institute of
Technology, 9 Cambridge Center, Cambridge MA 02142, USA.
3 Department of Anatomy and Reproductive Biology,
John A. Burns School of Medicine, University of Hawaii, Honolulu, HI
96822, USA.
*
These authors contributed equally to this work.
To whom correspondence should be addressed. E-mail:
jaenisch{at}wi.mit.edu
The editors suggest the following Related Resources on Science sites:
In Science Magazine
LETTERS
Abby Lippman, Stuart A. Newman;, Giuseppe Testa, and John Harris (28 January 2005) Science307 (5709), 515c.
[DOI: 10.1126/science.307.5709.515c] |Full Text »|PDF »
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Epigenetics in Cancer.
M. Esteller (2008)
N. Engl. J. Med.
358, 1148-1159
|Full Text »|PDF »
Heterozygous Embryonic Stem Cell Lines Derived from Nonhuman Primate Parthenotes.
V. Dighe, L. Clepper, D. Pedersen, J. Byrne, B. Ferguson, S. Gokhale, M. C. T. Penedo, D. Wolf, and S. Mitalipov (2008)
Stem Cells
26, 756-766
|Abstract »|Full Text »|PDF »
Culture and Genetic Modification of Mouse Germline Stem Cells.
M. KANATSU-SHINOHARA and T. SHINOHARA (2007)
Ann. N.Y. Acad. Sci.
1120, 59-71
|Abstract »|Full Text »|PDF »
Gene-specific vulnerability to imprinting variability in human embryonic stem cell lines.
K.-P. Kim, A. Thurston, C. Mummery, D. Ward-van Oostwaard, H. Priddle, C. Allegrucci, C. Denning, and L. Young (2007)
Genome Res.
17, 1731-1742
|Abstract »|Full Text »|PDF »
Status of genomic imprinting in human embryonic stem cells as revealed by a large cohort of independently derived and maintained lines.
P. J. Rugg-Gunn, A. C. Ferguson-Smith, and R. A. Pedersen (2007)
Hum. Mol. Genet.
16, R243-R251
|Abstract »|Full Text »|PDF »
Cattle Cloned from Increasingly Differentiated Muscle Cells.
Red Deer Cloned from Antler Stem Cells and Their Differentiated Progeny.
D. K Berg, C. Li, G. Asher, D. N Wells, and B. Oback (2007)
Biol Reprod
77, 384-394
|Abstract »|Full Text »|PDF »
Commentary: Isolated Stem Cells--Patentable as Cultural Artifacts?.
M. G. Hansson, G. Helgesson, R. Wessman, and R. Jaenisch (2007)
Stem Cells
25, 1507-1510
|Abstract »|Full Text »|PDF »
Checkpoint-apoptosis uncoupling in human and mouse embryonic stem cells: a source of karyotpic instability.
C. Mantel, Y. Guo, M. R. Lee, M.-K. Kim, M.-K. Han, H. Shibayama, S. Fukuda, M. C. Yoder, L. M. Pelus, K.-S. Kim, et al. (2007)
Blood
109, 4518-4527
|Abstract »|Full Text »|PDF »
Assessment and disease comparisons of hybrid developmental defects.
Methylation Status of Imprinting Centers for H19/IGF2 and SNURF/SNRPN in Primate Embryonic Stem Cells.
S. Mitalipov, L. Clepper, H. Sritanaudomchai, A. Fujimoto, and D. Wolf (2007)
Stem Cells
25, 581-588
|Abstract »|Full Text »|PDF »
Hematopoietic reconstitution with androgenetic and gynogenetic stem cells.
S. Eckardt, N. A. Leu, H. L. Bradley, H. Kato, K. D. Bunting, and K. J. McLaughlin (2007)
Genes & Dev.
21, 409-419
|Abstract »|Full Text »|PDF »
Sex-specific promoters regulate Dnmt3L expression in mouse germ cells.
T.C. Shovlin, D. Bourc'his, S. La Salle, A. O'Doherty, J.M. Trasler, T.H. Bestor, and C.P. Walsh (2007)
Hum. Reprod.
22, 457-467
|Abstract »|Full Text »|PDF »
Histocompatible Embryonic Stem Cells by Parthenogenesis.
K. Kim, P. Lerou, A. Yabuuchi, C. Lengerke, K. Ng, J. West, A. Kirby, M. J. Daly, and G. Q. Daley (2007)
Science
315, 482-486
|Abstract »|Full Text »|PDF »
Differentiation Potential of Parthenogenetic Embryonic Stem Cells Is Improved by Nuclear Transfer.
T. Hikichi, S. Wakayama, E. Mizutani, Y. Takashima, S. Kishigami, N. Van Thuan, H. Ohta, H. Thuy Bui, S.-I. Nishikawa, and T. Wakayama (2007)
Stem Cells
25, 46-53
|Abstract »|Full Text »|PDF »
Dimethyl Sulfoxide Has an Impact on Epigenetic Profile in Mouse Embryoid Body.
M. Iwatani, K. Ikegami, Y. Kremenska, N. Hattori, S. Tanaka, S. Yagi, and K. Shiota (2006)
Stem Cells
24, 2549-2556
|Abstract »|Full Text »|PDF »
A comparative approach to somatic cell nuclear transfer in the rhesus monkey.
Gene Expression Profiling of Mouse Embryonic Stem Cell Subpopulations.
T. Furusawa, M. Ikeda, F. Inoue, K. Ohkoshi, T. Hamano, and T. Tokunaga (2006)
Biol Reprod
75, 555-561
|Abstract »|Full Text »|PDF »
Bovine SNRPN Methylation Imprint in Oocytes and Day 17 In Vitro-Produced and Somatic Cell Nuclear Transfer Embryos.
D. Lucifero, J. Suzuki, V. Bordignon, J. Martel, C. Vigneault, J. Therrien, F. Filion, L. C. Smith, and J. M. Trasler (2006)
Biol Reprod
75, 531-538
|Abstract »|Full Text »|PDF »
Phenotypic abnormalities observed in aged cloned mice from embryonic stem cells after long-term maintenance..
N. Shimozawa, Y. Sotomaru, N. Eguchi, S. Suzuki, K. Hioki, T. Usui, T. Kono, and M. Ito (2006)
Reproduction
132, 435-441
|Abstract »|Full Text »|PDF »
Equivalency of Nuclear Transfer-Derived Embryonic Stem Cells to Those Derived from Fertilized Mouse Blastocysts.
S. Wakayama, M. L. Jakt, M. Suzuki, R. Araki, T. Hikichi, S. Kishigami, H. Ohta, N. Van Thuan, E. Mizutani, Y. Sakaide, et al. (2006)
Stem Cells
24, 2023-2033
|Abstract »|Full Text »|PDF »
Reprogramming Efficiency Following Somatic Cell Nuclear Transfer Is Influenced by the Differentiation and Methylation State of the Donor Nucleus.
R. Blelloch, Z. Wang, A. Meissner, S. Pollard, A. Smith, and R. Jaenisch (2006)
Stem Cells
24, 2007-2013
|Abstract »|Full Text »|PDF »
Nuclear transfer reprogramming does not improve the low developmental potency of embryonic stem cells induced by long-term culture..
T Amano, M Gertsenstein, A Nagy, H Kurihara, and H Suzuki (2006)
Reproduction
132, 257-263
|Abstract »|Full Text »|PDF »
Irreversible Barrier to the Reprogramming of Donor Cells in Cloning with Mouse Embryos and Embryonic Stem Cells.
Heart muscle engineering: An update on cardiac muscle replacement therapy.
W.-H. Zimmermann, M. Didie, S. Doker, I. Melnychenko, H. Naito, C. Rogge, M. Tiburcy, and T. Eschenhagen (2006)
Cardiovasc Res
71, 419-429
|Abstract »|Full Text »|PDF »
Using Therapeutic Cloning to Fight Human Disease: A Conundrum or Reality?.
V. J. Hall, P. Stojkovic, and M. Stojkovic (2006)
Stem Cells
24, 1628-1637
|Abstract »|Full Text »|PDF »
Gene expression profiling of individual bovine nuclear transfer blastocysts..
J. Somers, C. Smith, M. Donnison, D. N Wells, H. Henderson, L. McLeay, and P L Pfeffer (2006)
Reproduction
131, 1073-1084
|Abstract »|Full Text »|PDF »
Aberrant Genomic Imprinting in Rhesus Monkey Embryonic Stem Cells.
A. Fujimoto, S. M. Mitalipov, H.-C. Kuo, and D. P. Wolf (2006)
Stem Cells
24, 595-603
|Abstract »|Full Text »|PDF »
Assessing Self-Renewal and Differentiation in Human Embryonic Stem Cell Lines.
J. Cai, J. Chen, Y. Liu, T. Miura, Y. Luo, J. F. Loring, W. J. Freed, M. S. Rao, and X. Zeng (2006)
Stem Cells
24, 516-530
|Abstract »|Full Text »|PDF »
ES cells derived from cloned and fertilized blastocysts are transcriptionally and functionally indistinguishable.
T. Brambrink, K. Hochedlinger, G. Bell, and R. Jaenisch (2006)
PNAS
103, 933-938
|Abstract »|Full Text »|PDF »
Temporal and parental-specific expression of imprinted genes in a newly derived Chinese human embryonic stem cell line and embryoid bodies.
B. W. Sun, A. C. Yang, Y. Feng, Y. J. Sun, Y. f. Zhu, Y. Zhang, H. Jiang, C. L. Li, F. R. Gao, Z. H. Zhang, et al. (2006)
Hum. Mol. Genet.
15, 65-75
|Abstract »|Full Text »|PDF »
Variation in Gene Expression and Aberrantly Regulated Chromosome Regions in Cloned Mice.
T. Kohda, K. Inoue, N. Ogonuki, H. Miki, M. Naruse, T. Kaneko-Ishino, A. Ogura, and F. Ishino (2005)
Biol Reprod
73, 1302-1311
|Abstract »|Full Text »|PDF »
Morphological characterization of pre- and peri-implantation in vitro cultured, somatic cell nuclear transfer and in vivo derived ovine embryos.
P Tveden-Nyborg, T T Peura, K M Hartwich, S K Walker, and P Maddox-Hyttel (2005)
Reproduction
130, 681-694
|Abstract »|Full Text »|PDF »
Primary Differentiation in the Human Blastocyst: Comparative Molecular Portraits of Inner Cell Mass and Trophectoderm Cells.
J. Adjaye, J. Huntriss, R. Herwig, A. BenKahla, T. C. Brink, C. Wierling, C. Hultschig, D. Groth, M.-L. Yaspo, H. M Picton, et al. (2005)
Stem Cells
23, 1514-1525
|Abstract »|Full Text »|PDF »
Genetic and epigenetic properties of mouse male germline stem cells during long-term culture.
M. Kanatsu-Shinohara, N. Ogonuki, T. Iwano, J. Lee, Y. Kazuki, K. Inoue, H. Miki, M. Takehashi, S. Toyokuni, Y. Shinkai, et al. (2005)
Development
132, 4155-4163
|Abstract »|Full Text »|PDF »
Variable Reprogramming of the Pluripotent Stem Cell Marker Oct4 in Mouse Clones: Distinct Developmental Potentials in Different Culture Environments.
M. Boiani, L. Gentile, V. V. Gambles, F. Cavaleri, C. A. Redi, and H. R. Scholer (2005)
Stem Cells
23, 1089-1104
|Abstract »|Full Text »|PDF »
Meat and milk compositions of bovine clones.
X. C. Tian, C. Kubota, K. Sakashita, Y. Izaike, R. Okano, N. Tabara, C. Curchoe, L. Jacob, Y. Zhang, S. Smith, et al. (2005)
PNAS
102, 6261-6266
|Abstract »|Full Text »|PDF »
Epigenetic reprogramming in mammals.
H. D. Morgan, F. Santos, K. Green, W. Dean, and W. Reik (2005)
Hum. Mol. Genet.
14, R47-R58
|Abstract »|Full Text »|PDF »
Effect of Treating Induced Mitochondrial Damage on Embryonic Development and Epigenesis.
T. Takeuchi, Q. V. Neri, Y. Katagiri, Z. Rosenwaks, and G. D. Palermo (2005)
Biol Reprod
72, 584-592
|Abstract »|Full Text »|PDF »
Aberrant Gene Expression in Organs of Bovine Clones That Die Within Two Days after Birth.
S. Li, Y. Li, W. Du, L. Zhang, S. Yu, Y. Dai, C. Zhao, and N. Li (2005)
Biol Reprod
72, 258-265
|Abstract »|Full Text »|PDF »
Inactivation of Imprinted Genes Induced by Cellular Stress and Tumorigenesis.
C. Pantoja, L. de los Rios, A. Matheu, F. Antequera, and M. Serrano (2005)
Cancer Res.
65, 26-33
|Abstract »|Full Text »|PDF »
Nuclear Remodeling and Reprogramming in Transgenic Pig Production.
R. S. Prather, P. Sutovsky, and J. A. Green (2004)
Experimental Biology and Medicine
229, 1120-1126
|Abstract »|Full Text »|PDF »
Post Hatching Development: a Novel System for Extended in Vitro Culture of Bovine Embryos.
D. O. Brandao, P. Maddox-Hyttel, P. Lovendahl, R. Rumpf, D. Stringfellow, and H. Callesen (2004)
Biol Reprod
71, 2048-2055
|Abstract »|Full Text »|PDF »
Age-associated alteration of gene expression patterns in mouse oocytes.
T. Hamatani, G. Falco, M. G. Carter, H. Akutsu, C. A. Stagg, A. A. Sharov, D. B. Dudekula, V. VanBuren, and M. S.H. Ko (2004)
Hum. Mol. Genet.
13, 2263-2278
|Abstract »|Full Text »|PDF »
Epigenetic and Genomic Imprinting Analysis in Nuclear Transfer Derived Bos gaurus/Bos taurus Hybrid Fetuses.
S. V. Dindot, P. W. Farin, C. E. Farin, J. Romano, S. Walker, C. Long, and J. A. Piedrahita (2004)
Biol Reprod
71, 470-478
|Abstract »|Full Text »|PDF »
Microtubular spindle dynamics and chromosome complements from somatic cell nuclei haploidization in mature mouse oocytes and developmental potential of the derived embryos.
S.-U. Chen, C.-Y. Chang, C.-C. Lu, F.-J. Hsieh, H.-N. Ho, and Y.-S. Yang (2004)
Hum. Reprod.
19, 1181-1188
|Abstract »|Full Text »|PDF »
A successful model to assess embryo development after transplantation of prophase nuclei.
T. Takeuchi, Z. Rosenwaks, and G. D. Palermo (2004)
Hum. Reprod.
19, 975-981
|Abstract »|Full Text »|PDF »
Influence of in vitro manipulation on the stability of methylation patterns in the Snurf/Snrpn-imprinting region in mouse embryonic stem cells.
W. V Holt, A. R Pickard, and R. S Prather (2004)
Reproduction
127, 317-324
|Abstract »|Full Text »|PDF »
The Sall3 locus is an epigenetic hotspot of aberrant DNA methylation associated with placentomegaly of cloned mice.
J. Ohgane, T. Wakayama, S. Senda, Y. Yamazaki, K. Inoue, A. Ogura, J. Marh, S. Tanaka, R. Yanagimachi, and K. Shiota (2004)
Genes Cells
9, 253-260
|Abstract »|Full Text »|PDF »
Nuclear Transfer of Adult Bone Marrow Mesenchymal Stem Cells: Developmental Totipotency of Tissue-Specific Stem Cells from an Adult Mammal.
Y. Kato, H. Imabayashi, T. Mori, T. Tani, M. Taniguchi, M. Higashi, M. Matsumoto, A. Umezawa, and Y. Tsunoda (2004)
Biol Reprod
70, 415-418
|Abstract »|Full Text »|PDF »
Potential significance of genomic imprinting defects for reproduction and assisted reproductive technology.
D. Lucifero, J.R. Chaillet, and J. M. Trasler (2004)
Hum. Reprod. Update
10, 3-18
|Abstract »|Full Text »|PDF »
Development of fetuses from in vitro-produced and cloned bovine embryos.
C. E. Farin, P. W. Farin, and J. A. Piedrahita (2004)
J Anim Sci
82, E53-62
|Abstract »|Full Text »|PDF »
Fetal abnormalities produced after preimplantation exposure of mouse embryos to ammonium chloride.
S. Sinawat, W.-C. Hsaio, J. H. Flockhart, M. H. Kaufman, J. Keith, and J. D. West (2003)
Hum. Reprod.
18, 2157-2165
|Abstract »|Full Text »|PDF »
Disruption of Imprinted Gene Methylation and Expression in Cloned Preimplantation Stage Mouse Embryos.
M. R.W. Mann, Y. G. Chung, L. D. Nolen, R. I. Verona, K. E. Latham, and M. S. Bartolomei (2003)
Biol Reprod
69, 902-914
|Abstract »|Full Text »|PDF »
Epigenetic Characteristics and Development of Embryos Cloned from Donor Cells Treated by Trichostatin A or 5-aza-2'-deoxycytidine.
B.P. Enright, C. Kubota, X. Yang, and X.C. Tian (2003)
Biol Reprod
69, 896-901
|Abstract »|Full Text »|PDF »
Hierarchical Phenotypic and Epigenetic Variation in Cloned Swine.
G. S. Archer, S. Dindot, T. H. Friend, S. Walker, G. Zaunbrecher, B. Lawhorn, and J. A. Piedrahita (2003)
Biol Reprod
69, 430-436
|Abstract »|Full Text »|PDF »
Nuclear Transplantation, Embryonic Stem Cells, and the Potential for Cell Therapy.
K. Hochedlinger and R. Jaenisch (2003)
N. Engl. J. Med.
349, 275-286
|Full Text »|PDF »
The first half-century of nuclear transplantation.
O. El-Maarri, M. Seoud, P. Coullin, U. Herbiniaux, J. Oldenburg, G. Rouleau, and R. Slim (2003)
Hum. Mol. Genet.
12, 1405-1413
|Abstract »|Full Text »|PDF »
Classical Conditioning and Modification of the Rabbit's (Oryctolagus Cuniculus) Unconditioned Nictitating Membrane Response.
B. G. Schreurs (2003)
Behav Cogn Neurosci Rev
2, 83-96
|Abstract »|PDF »
Hybrid Embryonic Stem Cell-Derived Tetraploid Mice Show Apparently Normal Morphological, Physiological, and Neurological Characteristics.
F. Schwenk, B. Zevnik, J. Bruning, M. Rohl, A. Willuweit, A. Rode, T. Hennek, G. Kauselmann, R. Jaenisch, and R. Kuhn (2003)
Mol. Cell. Biol.
23, 3982-3989
|Abstract »|Full Text »|PDF »
Analysis and accurate quantification of CpG methylation by MALDI mass spectrometry.
J. Tost, P. Schatz, M. Schuster, K. Berlin, and I. G. Gut (2003)
Nucleic Acids Res.
31, e50
|Abstract »|Full Text »|PDF »
Hematopoietic stem cells: can old cells learn new tricks?.
Beckwith-Wiedemann syndrome demonstrates a role for epigenetic control of normal development.
R. Weksberg, A. C. Smith, J. Squire, and P. Sadowski (2003)
Hum. Mol. Genet.
12, R61-68
|Abstract »|Full Text »|PDF »
Erasing genomic imprinting memory in mouse clone embryos produced from day 11.5 primordial germ cells.
J. Lee, K. Inoue, R. Ono, N. Ogonuki, T. Kohda, T. Kaneko-Ishino, A. Ogura, and F. Ishino (2003)
Development
129, 1807-1817
|Abstract »|Full Text »|PDF »
Numerical Chromosome Errors in Day 7 Somatic Nuclear Transfer Bovine Blastocysts.
P. J. Booth, D. Viuff, S. Tan, P. Holm, T. Greve, and H. Callesen (2003)
Biol Reprod
68, 922-928
|Abstract »|Full Text »|PDF »
Genome-Wide Epigenetic Alterations in Cloned Bovine Fetuses.
G. G. Cezar, M. S. Bartolomei, E. J. Forsberg, N. L. First, M. D. Bishop, and K. J. Eilertsen (2003)
Biol Reprod
68, 1009-1014
|Abstract »|Full Text »|PDF »
Effect of Cell Confluence on Production of Cloned Mice Using an Inbred Embryonic Stem Cell Line.
S. Gao, M. McGarry, T. Ferrier, B. Pallante, B. Gasparrini, J. Fletcher, L. Harkness, P. De Sousa, J. McWhir, and I. Wilmut (2003)
Biol Reprod
68, 595-603
|Abstract »|Full Text »|PDF »
Pax3-FKHR Knock-In Mice Show Developmental Aberrations but Do Not Develop Tumors.
I. Lagutina, S. J. Conway, J. Sublett, and G. C. Grosveld (2002)
Mol. Cell. Biol.
22, 7204-7216
|Abstract »|Full Text »|PDF »
Epigenetic risks related to assisted reproductive technologies: Risk analysis and epigenetic inheritance.
M. De Rycke, I. Liebaers, and A. Van Steirteghem (2002)
Hum. Reprod.
17, 2487-2494
|Abstract »|Full Text »|PDF »
Abnormal gene expression in cloned mice derived from embryonic stem cell and cumulus cell nuclei.
D. Humpherys, K. Eggan, H. Akutsu, A. Friedman, K. Hochedlinger, R. Yanagimachi, E. S. Lander, T. R. Golub, and R. Jaenisch (2002)
PNAS
99, 12889-12894
|Abstract »|Full Text »|PDF »
Cellular and Molecular Deviations in Bovine In Vitro-Produced Embryos Are Related to the Large Offspring Syndrome.
G. Lazzari, C. Wrenzycki, D. Herrmann, R. Duchi, T. Kruip, H. Niemann, and C. Galli (2002)
Biol Reprod
67, 767-775
|Abstract »|Full Text »|