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Vernalization, the acceleration of flowering by a long
period of cold temperature, ensures that many plants overwinter
vegetativelyand flower in spring. In Arabidopsis, allelic
variation at theFRIGIDA (FRI) locus is a major
determinant of natural variationin flowering time. Dominant alleles of
FRI confer late flowering,which is reversed to earliness by
vernalization. We cloned FRIand analyzed the molecular
basis of the allelic variation. Mostof the early-flowering ecotypes
analyzed carry FRI alleles containingone of two different
deletions that disrupt the open reading frame.Loss-of-function
mutations at FRI have thus provided the basisfor the
evolution of many early-flowering ecotypes.
1 Department of Molecular Genetics, John Innes
Centre, Norwich NR4 7UH, UK.
2 Department of
Biochemistry, University of Wisconsin, Madison, WI 53706, USA.
*
Present address: Department of Plant Biochemistry, Lund
University, Post Office Box 117, SE-221 00 Lund, Sweden.
To whom correspondence should be addressed. E-mail:
caroline.dean{at}bbsrc.ac.uk
Cis-regulatory Changes at FLOWERING LOCUS T Mediate Natural Variation in Flowering Responses of Arabidopsis thaliana.
C. Schwartz, S. Balasubramanian, N. Warthmann, T. P. Michael, J. Lempe, S. Sureshkumar, Y. Kobayashi, J. N. Maloof, J. O. Borevitz, J. Chory, et al. (2009)
Genetics
183, 723-732
|Abstract »|Full Text »|PDF »
Splicing Variation at a FLOWERING LOCUS C Homeolog Is Associated With Flowering Time Variation in the Tetraploid Capsella bursa-pastoris.
T. Slotte, H.-R. Huang, K. Holm, A. Ceplitis, K. St. Onge, J. Chen, U. Lagercrantz, and M. Lascoux (2009)
Genetics
183, 337-345
|Abstract »|Full Text »|PDF »
Candidate Gene Association Mapping of Arabidopsis Flowering Time.
I. M. Ehrenreich, Y. Hanzawa, L. Chou, J. L. Roe, P. X. Kover, and M. D. Purugganan (2009)
Genetics
183, 325-335
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Global Analysis of Allele-Specific Expression in Arabidopsis thaliana.
What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation?.
C. Alonso-Blanco, M. G.M. Aarts, L. Bentsink, J. J.B. Keurentjes, M. Reymond, D. Vreugdenhil, and M. Koornneef (2009)
PLANT CELL
21, 1877-1896
|Abstract »|Full Text »|PDF »
FRIGIDA Delays Flowering in Arabidopsis via a Cotranscriptional Mechanism Involving Direct Interaction with the Nuclear Cap-Binding Complex.
N. Geraldo, I. Baurle, S.-i. Kidou, X. Hu, and C. Dean (2009)
Plant Physiology
150, 1611-1618
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The molecular biology of seasonal flowering-responses in Arabidopsis and the cereals.
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Ann. Bot.
103, 1165-1172
|Abstract »|Full Text »|PDF »
Establishment of the Winter-Annual Growth Habit via FRIGIDA-Mediated Histone Methylation at FLOWERING LOCUS C in Arabidopsis.
Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.
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PNAS
106, 4555-4560
|Abstract »|Full Text »|PDF »
Complex Rearrangements Lead to Novel Chimeric Gene Fusion Polymorphisms at the Arabidopsis thaliana MAF2-5 Flowering Time Gene Cluster.
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Mol. Biol. Evol.
26, 699-711
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Histone H2B Deubiquitination Is Required for Transcriptional Activation of FLOWERING LOCUS C and for Proper Control of Flowering in Arabidopsis.
R. J. Schmitz, Y. Tamada, M. R. Doyle, X. Zhang, and R. M. Amasino (2009)
Plant Physiology
149, 1196-1204
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Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes.
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Acceleration of Flowering during Shade Avoidance in Arabidopsis Alters the Balance between FLOWERING LOCUS C-Mediated Repression and Photoperiodic Induction of Flowering.
A. C. Wollenberg, B. Strasser, P. D. Cerdan, and R. M. Amasino (2008)
Plant Physiology
148, 1681-1694
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Regulation of CONSTANS and FLOWERING LOCUS T Expression in Response to Changing Light Quality.
Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome.
Z. Bieniawska, C. Espinoza, A. Schlereth, R. Sulpice, D. K. Hincha, and M. A. Hannah (2008)
Plant Physiology
147, 263-279
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A Comparison of Two Nicotiana attenuata Accessions Reveals Large Differences in Signaling Induced by Oral Secretions of the Specialist Herbivore Manduca sexta.
J. Wu, C. Hettenhausen, M. C. Schuman, and I. T. Baldwin (2008)
Plant Physiology
146, 927-939
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Construction and Analysis of 2 Reciprocal Arabidopsis Introgression Line Populations.
O. Torjek, R. C. Meyer, M. Zehnsdorf, M. Teltow, G. Strompen, H. Witucka-Wall, A. Blacha, and T. Altmann (2008)
J. Hered.
|Abstract »|Full Text »|PDF »
Mutations in the Arabidopsis SWC6 gene, encoding a component of the SWR1 chromatin remodelling complex, accelerate flowering time and alter leaf and flower development.
A. Lazaro, A. Gomez-Zambrano, L. Lopez-Gonzalez, M. Pineiro, and J. A. Jarillo (2008)
J. Exp. Bot.
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Di- and Tri- but Not Monomethylation on Histone H3 Lysine 36 Marks Active Transcription of Genes Involved in Flowering Time Regulation and Other Processes in Arabidopsis thaliana.
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Mol. Cell. Biol.
28, 1348-1360
|Abstract »|Full Text »|PDF »
The FLX Gene of Arabidopsis is Required for FRI-Dependent Activation of FLC Expression.
C. R. Andersson, C. A. Helliwell, D. J. Bagnall, T. P. Hughes, E. J. Finnegan, W. J. Peacock, and E. S. Dennis (2008)
Plant Cell Physiol.
49, 191-200
|Abstract »|Full Text »|PDF »
Natural Variation in Arabidopsis lyrata Vernalization Requirement Conferred by a FRIGIDA Indel Polymorphism.
H. Kuittinen, A. Niittyvuopio, P. Rinne, and O. Savolainen (2008)
Mol. Biol. Evol.
25, 319-329
|Abstract »|Full Text »|PDF »
Inaugural Article: Histone arginine methylation is required for vernalization-induced epigenetic silencing of FLC in winter-annual Arabidopsis thaliana.
Differential Expression of Genes Important for Adaptation in Capsella bursa-pastoris (Brassicaceae).
T. Slotte, K. Holm, L. M. McIntyre, U. Lagercrantz, and M. Lascoux (2007)
Plant Physiology
145, 160-173
|Abstract »|Full Text »|PDF »
Attenuation of brassinosteroid signaling enhances FLC expression and delays flowering.
M. A. Domagalska, F. M. Schomburg, R. M. Amasino, R. D. Vierstra, F. Nagy, and S. J. Davis (2007)
Development
134, 2841-2850
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Natural Variation among Arabidopsis thaliana Accessions for Transcriptome Response to Exogenous Salicylic Acid.
H. van Leeuwen, D. J. Kliebenstein, M. A.L. West, K. Kim, R. van Poecke, F. Katagiri, R. W. Michelmore, R. W. Doerge, and D. A. St.Clair (2007)
PLANT CELL
19, 2099-2110
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Natural Genetic Variation in Arabidopsis: Tools, Traits and Prospects for Evolutionary Ecology.
C. Shindo, G. Bernasconi, and C. S. Hardtke (2007)
Ann. Bot.
99, 1043-1054
|Abstract »|Full Text »|PDF »
Evolutionary Conservation of the FLOWERING LOCUS C-Mediated Vernalization Response: Evidence From the Sugar Beet (Beta vulgaris).
P. A. Reeves, Y. He, R. J. Schmitz, R. M. Amasino, L. W. Panella, and C. M. Richards (2007)
Genetics
176, 295-307
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Components of the Arabidopsis mRNA Decapping Complex Are Required for Early Seedling Development.
D. C. Goeres, J. M. Van Norman, W. Zhang, N. A. Fauver, M. L. Spencer, and L. E. Sieburth (2007)
PLANT CELL
19, 1549-1564
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Control of flowering time in temperate cereals: genes, domestication, and sustainable productivity.
J. Cockram, H. Jones, F. J. Leigh, D. O'Sullivan, W. Powell, D. A. Laurie, and A. J. Greenland (2007)
J. Exp. Bot.
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Single Gene-Mediated Shift in Pollinator Attraction in Petunia.
M. E. Hoballah, T. Gubitz, J. Stuurman, L. Broger, M. Barone, T. Mandel, A. Dell'Olivo, M. Arnold, and C. Kuhlemeier (2007)
PLANT CELL
19, 779-790
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Global eQTL Mapping Reveals the Complex Genetic Architecture of Transcript-Level Variation in Arabidopsis.
M. A. L. West, K. Kim, D. J. Kliebenstein, H. van Leeuwen, R. W. Michelmore, R. W. Doerge, and D. A. St. Clair (2007)
Genetics
175, 1441-1450
|Abstract »|Full Text »|PDF »
SUPPRESSOR OF FRI 4 encodes a nuclear-localized protein that is required for delayed flowering in winter-annual Arabidopsis.
Additional targets of the Arabidopsis autonomous pathway members, FCA and FY.
S Marquardt, P. Boss, J Hadfield, and C Dean (2006)
J. Exp. Bot.
57, 3379-3386
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Protein interactions of MADS box transcription factors involved in flowering in Lolium perenne.
S. Ciannamea, K. Kaufmann, M. Frau, I. A. N. Tonaco, K. Petersen, K. K. Nielsen, G. C. Angenent, and R. G. H. Immink (2006)
J. Exp. Bot.
57, 3419-3431
|Abstract »|Full Text »|PDF »
The transcription factor FLC confers a flowering response to vernalization by repressing meristem competence and systemic signaling in Arabidopsis..
I. Searle, Y. He, F. Turck, C. Vincent, F. Fornara, S. Krober, R. A. Amasino, and G. Coupland (2006)
Genes & Dev.
20, 898-912
|Abstract »|Full Text »|PDF »
Characterization of the Vernalization Response in Lolium perenne by a cDNA Microarray Approach.
S. Ciannamea, J. Busscher-Lange, S. de Folter, G. C. Angenent, and R. G. H. Immink (2006)
Plant Cell Physiol.
47, 481-492
|Abstract »|Full Text »|PDF »
EARLY IN SHORT DAYS 1 (ESD1) encodes ACTIN-RELATED PROTEIN 6 (AtARP6), a putative component of chromatin remodelling complexes that positively regulates FLC accumulation in Arabidopsis.
M. Martin-Trillo, A. Lazaro, R. S. Poethig, C. Gomez-Mena, M. A. Pineiro, J. M. Martinez-Zapater, and J. A. Jarillo (2006)
Development
133, 1241-1252
|Abstract »|Full Text »|PDF »
FLOWERING LOCUS C Mediates Natural Variation in the High-Temperature Response of the Arabidopsis Circadian Clock.
K. D. Edwards, P. E. Anderson, A. Hall, N. S. Salathia, J. C.W. Locke, J. R. Lynn, M. Straume, J. Q. Smith, and A. J. Millar (2006)
PLANT CELL
18, 639-650
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Genomic Survey of Gene Expression Diversity in Arabidopsis thaliana.
D. J. Kliebenstein, M. A. L. West, H. van Leeuwen, K. Kim, R. W. Doerge, R. W. Michelmore, and D. A. St. Clair (2006)
Genetics
172, 1179-1189
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The role of sugars in integrating environmental signals during the regulation of leaf senescence.
A. Wingler, S. Purdy, J. A. MacLean, and N. Pourtau (2006)
J. Exp. Bot.
57, 391-399
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Extreme Population-Dependent Linkage Disequilibrium Detected in an Inbreeding Plant Species, Hordeum vulgare.
K. S. Caldwell, J. Russell, P. Langridge, and W. Powell (2006)
Genetics
172, 557-567
|Abstract »|Full Text »|PDF »
FRIGIDA-ESSENTIAL 1 interacts genetically with FRIGIDA and FRIGIDA-LIKE 1 to promote the winter-annual habit of Arabidopsis thaliana.
R. J. Schmitz, L. Hong, S. Michaels, and R. M. Amasino (2005)
Development
132, 5471-5478
|Abstract »|Full Text »|PDF »
Establishment of the Vernalization-Responsive, Winter-Annual Habit in Arabidopsis Requires a Putative Histone H3 Methyl Transferase.
S. Y. Kim, Y. He, Y. Jacob, Y.-S. Noh, S. Michaels, and R. Amasino (2005)
PLANT CELL
17, 3301-3310
|Abstract »|Full Text »|PDF »
Vernalization sensitivity in Arabidopsis thaliana (Brassicaceae): the effects of latitude and FLC variation.
J. R. Stinchcombe, A. L. Caicedo, R. Hopkins, C. Mays, E. W. Boyd, M. D. Purugganan, and J. Schmitt (2005)
Am. J. Botany
92, 1701-1707
|Abstract »|Full Text »|PDF »
SUPPRESSOR OF FRIGIDA3 Encodes a Nuclear ACTIN-RELATED PROTEIN6 Required for Floral Repression in Arabidopsis.
K. Choi, S. Kim, S. Y. Kim, M. Kim, Y. Hyun, H. Lee, S. Choe, S.-G. Kim, S. Michaels, and I. Lee (2005)
PLANT CELL
17, 2647-2660
|Abstract »|Full Text »|PDF »
An allelic series reveals essential roles for FY in plant development in addition to flowering-time control.
I. R. Henderson, F. Liu, S. Drea, G. G. Simpson, and C. Dean (2005)
Development
132, 3597-3607
|Abstract »|Full Text »|PDF »
TWIN SISTER OF FT (TSF) Acts as a Floral Pathway Integrator Redundantly with FT.
A. Yamaguchi, Y. Kobayashi, K. Goto, M. Abe, and T. Araki (2005)
Plant Cell Physiol.
46, 1175-1189
|Abstract »|Full Text »|PDF »
Natural Variation in Arabidopsis. How Do We Find the Causal Genes?.
D. Weigel and M. Nordborg (2005)
Plant Physiology
138, 567-568
|Full Text »|PDF »
Role of FRIGIDA and FLOWERING LOCUS C in Determining Variation in Flowering Time of Arabidopsis.
C. Shindo, M. J. Aranzana, C. Lister, C. Baxter, C. Nicholls, M. Nordborg, and C. Dean (2005)
Plant Physiology
138, 1163-1173
|Abstract »|Full Text »|PDF »
Differential Regulation of FLOWERING LOCUS C Expression by Vernalization in Cabbage and Arabidopsis.
S.-I Lin, J.-G. Wang, S.-Y. Poon, C.-l. Su, S.-S. Wang, and T.-J. Chiou (2005)
Plant Physiology
137, 1037-1048
|Abstract »|Full Text »|PDF »
Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation.
J. D. Werner, J. O. Borevitz, N. Warthmann, G. T. Trainer, J. R. Ecker, J. Chory, and D. Weigel (2005)
PNAS
102, 2460-2465
|Abstract »|Full Text »|PDF »
Photoperiod Regulates Flower Meristem Development in Arabidopsis thaliana.
PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.
Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait.
A. L. Caicedo, J. R. Stinchcombe, K. M. Olsen, J. Schmitt, and M. D. Purugganan (2004)
PNAS
101, 15670-15675
|Abstract »|Full Text »|PDF »
The Role of Genomics Research in Improvement of "Orphan" Crops.
R. J. Nelson, R. L. Naylor, and M. M. Jahn (2004)
Crop Sci.
44, 1901-1904
|Full Text »|PDF »
Haplotype Structure and Phenotypic Associations in the Chromosomal Regions Surrounding Two Arabidopsis thaliana Flowering Time Loci.
J. Hagenblad, C. Tang, J. Molitor, J. Werner, K. Zhao, H. Zheng, P. Marjoram, D. Weigel, and M. Nordborg (2004)
Genetics
168, 1627-1638
|Abstract »|Full Text »|PDF »
A Mechanism Related to the Yeast Transcriptional Regulator Paf1c Is Required for Expression of the Arabidopsis FLC/MAF MADS Box Gene Family.
S. Oh, H. Zhang, P. Ludwig, and S. van Nocker (2004)
PLANT CELL
16, 2940-2953
|Abstract »|Full Text »|PDF »
Vernalization, Competence, and the Epigenetic Memory of Winter.
Divergent Roles of a Pair of Homologous Jumonji/Zinc-Finger-Class Transcription Factor Proteins in the Regulation of Arabidopsis Flowering Time.
B. Noh, S.-H. Lee, H.-J. Kim, G. Yi, E.-A. Shin, M. Lee, K.-J. Jung, M. R. Doyle, R. M. Amasino, and Y.-S. Noh (2004)
PLANT CELL
16, 2601-2613
|Abstract »|Full Text »|PDF »
Control of Arabidopsis flowering: the chill before the bloom.
Linkage Disequilibrium Mapping of Arabidopsis CRY2 Flowering Time Alleles.
K. M. Olsen, S. S. Halldorsdottir, J. R. Stinchcombe, C. Weinig, J. Schmitt, and M. D. Purugganan (2004)
Genetics
167, 1361-1369
|Abstract »|Full Text »|PDF »
Molecular and Genetic Mechanisms of Floral Control.
Multiple Pathways in the Decision to Flower: Enabling, Promoting, and Resetting.
P. K. Boss, R. M. Bastow, J. S. Mylne, and C. Dean (2004)
PLANT CELL
16, S18-S31
|Full Text »|PDF »
Quantitative Trait Locus Analysis of Growth-Related Traits in a New Arabidopsis Recombinant Inbred Population.
M. E. El-Lithy, E. J.M. Clerkx, G. J. Ruys, M. Koornneef, and D. Vreugdenhil (2004)
Plant Physiology
135, 444-458
|Abstract »|Full Text »|PDF »
A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA.
J. R. Stinchcombe, C. Weinig, M. Ungerer, K. M. Olsen, C. Mays, S. S. Halldorsdottir, M. D. Purugganan, and J. Schmitt (2004)
PNAS
101, 4712-4717
|Abstract »|Full Text »|PDF »
Exploiting quantitative trait loci in gene discovery.
S. Hake and T. Rocheford (2004)
Genes & Dev.
18, 597-601
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Natural genetic variation in Arabidopsis identifies BREVIS RADIX, a novel regulator of cell proliferation and elongation in the root.
C. F. Mouchel, G. C. Briggs, and C. S. Hardtke (2004)
Genes & Dev.
18, 700-714
|Abstract »|Full Text »|PDF »