Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 19 May 2000: Vol. 288. no. 5469, pp. 1242 - 1244 DOI: 10.1126/science.288.5469.1242
|
|
Reports
Distinct Classes of Yeast Promoters Revealed by Differential TAF Recruitment
Xiao-Yong Li,
*
Sukesh R. Bhaumik,
*
Michael R. Green
The transcription factor TFIID contains the TATA box
binding protein (TBP) and multiple TBP-associated factors
(TAFs). Here, the association of TFIID components with promoters
that either are dependent on multiple TAFs
(TAFdep) or have no apparent TAF requirement
(TAFind) is analyzed in yeast. At
TAFdep promoters, TAFs are present at levels
comparable to that of TBP, whereas at TAFind
promoters, TAFs are present at levels that approximate background.
After inactivation of several general transcription factors, including
TBP, TAFs are still recruited by activators to TAFdep
promoters. The results reveal two classes of promoters: at
TAFind promoters, TBP is recruited in the apparent
absence of TAFs, whereas at TAFdep promoters, TAFs
are co-recruited with TBP in a manner consistent with direct
activator-TAF interactions.
Howard Hughes Medical Institute, Program in Molecular Medicine,
University of Massachusetts Medical School, Worcester, MA 01605, USA.
*
These authors contributed equally to this work.
To whom correspondence should be addressed. E-mail:
michael.green{at}umassmed.edu
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Site-specific cross-linking of TBP in vivo and in vitro reveals a direct functional interaction with the SAGA subunit Spt3.
- N. Mohibullah and S. Hahn (2008)
Genes & Dev.
22, 2994-3006
| Abstract »
| Full Text »
| PDF »
- Dissection of Coactivator Requirement at RNR3 Reveals Unexpected Contributions from TFIID and SAGA.
- H. Zhang, J. A. Kruk, and J. C. Reese (2008)
J. Biol. Chem.
283, 27360-27368
| Abstract »
| Full Text »
| PDF »
- Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome.
- F. J. van Werven, H. van Bakel, H. A.A.M. van Teeffelen, A.F. M. Altelaar, M. G. Koerkamp, A. J.R. Heck, F. C.P. Holstege, and H.Th. M. Timmers (2008)
Genes & Dev.
22, 2359-2369
| Abstract »
| Full Text »
| PDF »
- The Transcriptional Repressor Activator Protein Rap1p Is a Direct Regulator of TATA-binding Protein.
- M. Bendjennat and P. A. Weil (2008)
J. Biol. Chem.
283, 8699-8710
| Abstract »
| Full Text »
| PDF »
- SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster.
- S. Kundu, P. J. Horn, and C. L. Peterson (2007)
Genes & Dev.
21, 997-1004
| Abstract »
| Full Text »
| PDF »
- The New Core Promoter Element XCPE1 (X Core Promoter Element 1) Directs Activator-, Mediator-, and TATA-Binding Protein-Dependent but TFIID-Independent RNA Polymerase II Transcription from TATA-Less Promoters.
- Y. Tokusumi, Y. Ma, X. Song, R. H. Jacobson, and S. Takada (2007)
Mol. Cell. Biol.
27, 1844-1858
| Abstract »
| Full Text »
| PDF »
- Yeast TFIID Serves as a Coactivator for Rap1p by Direct Protein-Protein Interaction.
- K. A. Garbett, M. K. Tripathi, B. Cencki, J. H. Layer, and P. A. Weil (2007)
Mol. Cell. Biol.
27, 297-311
| Abstract »
| Full Text »
| PDF »
- SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo.
- A. Shukla, P. Bajwa, and S. R. Bhaumik (2006)
Nucleic Acids Res.
34, 6225-6232
| Abstract »
| Full Text »
| PDF »
- Full and partial genome-wide assembly and disassembly of the yeast transcription machinery in response to heat shock..
- S. J. Zanton and B. F. Pugh (2006)
Genes & Dev.
20, 2250-2265
| Abstract »
| Full Text »
| PDF »
- Functional Analysis of H2B-Lys-123 Ubiquitination in Regulation of H3-Lys-4 Methylation and Recruitment of RNA Polymerase II at the Coding Sequences of Several Active Genes in Vivo.
- A. Shukla, N. Stanojevic, Z. Duan, T. Shadle, and S. R. Bhaumik (2006)
J. Biol. Chem.
281, 19045-19054
| Abstract »
| Full Text »
| PDF »
- Ubp8p, a Histone Deubiquitinase Whose Association with SAGA Is Mediated by Sgf11p, Differentially Regulates Lysine 4 Methylation of Histone H3 In Vivo..
- A. Shukla, N. Stanojevic, Z. Duan, P. Sen, and S. R. Bhaumik (2006)
Mol. Cell. Biol.
26, 3339-3352
| Abstract »
| Full Text »
| PDF »
- Genome-Wide Relationships between TAF1 and Histone Acetyltransferases in Saccharomyces cerevisiae..
- M. Durant and B. F. Pugh (2006)
Mol. Cell. Biol.
26, 2791-2802
| Abstract »
| Full Text »
| PDF »
- Simultaneous Recruitment of Coactivators by Gcn4p Stimulates Multiple Steps of Transcription In Vivo.
- C. K. Govind, S. Yoon, H. Qiu, S. Govind, and A. G. Hinnebusch (2005)
Mol. Cell. Biol.
25, 5626-5638
| Abstract »
| Full Text »
| PDF »
- Differential Requirement of SAGA Subunits for Mot1p and Taf1p Recruitment in Gene Activation.
- C. J. C. van Oevelen, H. A. A. M. van Teeffelen, and H. T. M. Timmers (2005)
Mol. Cell. Biol.
25, 4863-4872
| Abstract »
| Full Text »
| PDF »
- Interdependent Recruitment of SAGA and Srb Mediator by Transcriptional Activator Gcn4p.
- H. Qiu, C. Hu, F. Zhang, G. J. Hwang, M. J. Swanson, C. Boonchird, and A. G. Hinnebusch (2005)
Mol. Cell. Biol.
25, 3461-3474
| Abstract »
| Full Text »
| PDF »
- Evidence that the Elongation Factor TFIIS Plays a Role in Transcription Initiation at GAL1 in Saccharomyces cerevisiae.
- D. M. Prather, E. Larschan, and F. Winston (2005)
Mol. Cell. Biol.
25, 2650-2659
| Abstract »
| Full Text »
| PDF »
- Mapping and Functional Characterization of the TAF11 Interaction with TFIIA.
- M. M. Robinson, G. Yatherajam, R. T. Ranallo, A. Bric, M. R. Paule, and L. A. Stargell (2005)
Mol. Cell. Biol.
25, 945-957
| Abstract »
| Full Text »
| PDF »
- The Saccharomyces cerevisiae Srb8-Srb11 Complex Functions with the SAGA Complex during Gal4-Activated Transcription.
- E. Larschan and F. Winston (2005)
Mol. Cell. Biol.
25, 114-123
| Abstract »
| Full Text »
| PDF »
- Changes in genomewide occupancy of core transcriptional regulators during heat stress.
- S. J. Zanton and B. F. Pugh (2004)
PNAS
101, 16843-16848
| Abstract »
| Full Text »
| PDF »
- Quantitative sequential chromatin immunoprecipitation, a method for analyzing co-occupancy of proteins at genomic regions in vivo.
- J. V. Geisberg and K. Struhl (2004)
Nucleic Acids Res.
32, e151
| Abstract »
| Full Text »
| PDF »
- On the Mechanism of Constitutive Pdr1 Activator-mediated PDR5 Transcription in Saccharomyces cerevisiae: EVIDENCE FOR ENHANCED RECRUITMENT OF COACTIVATORS AND ALTERED NUCLEOSOME STRUCTURES.
- C. Gao, L. Wang, E. Milgrom, and W.-C. W. Shen (2004)
J. Biol. Chem.
279, 42677-42686
| Abstract »
| Full Text »
| PDF »
- TFIIB-facilitated recruitment of preinitiation complexes by a TAF-independent mechanism.
- R. T. Hori, S. Xu, X. Hu, and S. Pyo (2004)
Nucleic Acids Res.
32, 3856-3863
| Abstract »
| Full Text »
| PDF »
- An Array of Coactivators Is Required for Optimal Recruitment of TATA Binding Protein and RNA Polymerase II by Promoter-Bound Gcn4p.
- H. Qiu, C. Hu, S. Yoon, K. Natarajan, M. J. Swanson, and A. G. Hinnebusch (2004)
Mol. Cell. Biol.
24, 4104-4117
| Abstract »
| Full Text »
| PDF »
- Genome-Wide Occupancy Profile of the RNA Polymerase III Machinery in Saccharomyces cerevisiae Reveals Loci with Incomplete Transcription Complexes.
- Z. Moqtaderi and K. Struhl (2004)
Mol. Cell. Biol.
24, 4118-4127
| Abstract »
| Full Text »
| PDF »
- Autonomous Function of the Amino-Terminal Inhibitory Domain of TAF1 in Transcriptional Regulation.
- S. Takahata, K. Kasahara, M. Kawaichi, and T. Kokubo (2004)
Mol. Cell. Biol.
24, 3089-3099
| Abstract »
| Full Text »
| PDF »
- An Extensive Requirement for Transcription Factor IID-specific TAF-1 in Caenorhabditis elegans Embryonic Transcription.
- A. K. Walker, Y. Shi, and T. K. Blackwell (2004)
J. Biol. Chem.
279, 15339-15347
| Abstract »
| Full Text »
| PDF »
- In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer.
- S. R. Bhaumik, T. Raha, D. P. Aiello, and M. R. Green (2004)
Genes & Dev.
18, 333-343
| Abstract »
| Full Text »
| PDF »
- Association of the Mediator complex with enhancers of active genes.
- L. Kuras, T. Borggrefe, and R. D. Kornberg (2003)
PNAS
100, 13887-13891
| Abstract »
| Full Text »
| PDF »
- The FACT Complex Travels with Elongating RNA Polymerase II and Is Important for the Fidelity of Transcriptional Initiation In Vivo.
- P. B. Mason and K. Struhl (2003)
Mol. Cell. Biol.
23, 8323-8333
| Abstract »
| Full Text »
| PDF »
- Identification of a Novel TATA Element-binding Protein Binding Region at the N Terminus of the Saccharomyces cerevisiae TAF1 Protein.
- S. Takahata, H. Ryu, K. Ohtsuki, K. Kasahara, M. Kawaichi, and T. Kokubo (2003)
J. Biol. Chem.
278, 45888-45902
| Abstract »
| Full Text »
| PDF »
- Core Promoter Elements and TAFs Contribute to the Diversity of Transcriptional Activation in Vertebrates.
- Z. Chen and J. L. Manley (2003)
Mol. Cell. Biol.
23, 7350-7362
| Abstract »
| Full Text »
| PDF »
- Human Mediator Enhances Activator-Facilitated Recruitment of RNA Polymerase II and Promoter Recognition by TATA-Binding Protein (TBP) Independently of TBP-Associated Factors.
- S.-Y. Wu, T. Zhou, and C.-M. Chiang (2003)
Mol. Cell. Biol.
23, 6229-6242
| Abstract »
| Full Text »
| PDF »
- Structural and Functional Analysis of Mutations along the Crystallographic Dimer Interface of the Yeast TATA Binding Protein.
- H. Kou, J. D. Irvin, K. L. Huisinga, M. Mitra, and B. F. Pugh (2003)
Mol. Cell. Biol.
23, 3186-3201
| Abstract »
| Full Text »
| PDF »
- Use of a Genetically Introduced Cross-linker to Identify Interaction Sites of Acidic Activators within Native Transcription Factor IID and SAGA.
- J. Klein, M. Nolden, S. L. Sanders, J. Kirchner, P. A. Weil, and K. Melcher (2003)
J. Biol. Chem.
278, 6779-6786
| Abstract »
| Full Text »
| PDF »
- Protein-protein interaction map for yeast TFIID.
- G. Yatherajam, L. Zhang, S. M. Kraemer, and L. A. Stargell (2003)
Nucleic Acids Res.
31, 1252-1260
| Abstract »
| Full Text »
| PDF »
- Mutations in the histone fold domain of the TAF12 gene show synthetic lethality with the TAF1 gene lacking the TAF N-terminal domain (TAND) by different mechanisms from those in the SPT15 gene encoding the TATA box-binding protein (TBP).
- A. Kobayashi, T. Miyake, M. Kawaichi, and T. Kokubo (2003)
Nucleic Acids Res.
31, 1261-1274
| Abstract »
| Full Text »
| PDF »
- A Broad but Restricted Requirement for TAF-5 (Human TAFII100) for Embryonic Transcription in Caenorhabditis elegans.
- A. K. Walker and T. K. Blackwell (2003)
J. Biol. Chem.
278, 6181-6186
| Abstract »
| Full Text »
| PDF »
- Activator-Independent Functions of the Yeast Mediator Sin4 Complex in Preinitiation Complex Formation and Transcription Reinitiation.
- W. M. Reeves and S. Hahn (2003)
Mol. Cell. Biol.
23, 349-358
| Abstract »
| Full Text »
- The NC2 alpha and beta subunits play different roles in vivo.
- S. Creton, J. Q. Svejstrup, and M. A. Collart (2002)
Genes & Dev.
16, 3265-3276
| Abstract »
| Full Text »
| PDF »
- Mot1 Associates with Transcriptionally Active Promoters and Inhibits Association of NC2 in Saccharomyces cerevisiae.
- J. V. Geisberg, Z. Moqtaderi, L. Kuras, and K. Struhl (2002)
Mol. Cell. Biol.
22, 8122-8134
| Abstract »
| Full Text »
| PDF »
- The VP16 Activation Domain Interacts with Multiple Transcriptional Components as Determined by Protein-Protein Cross-linking in Vivo.
- D. B. Hall and K. Struhl (2002)
J. Biol. Chem.
277, 46043-46050
| Abstract »
| Full Text »
| PDF »
- Crystal Structure of a Subcomplex of Human Transcription Factor TFIID Formed by TATA Binding Protein-associated Factors hTAF4 (hTAFII135) and hTAF12 (hTAFII20).
- S. Werten, A. Mitschler, C. Romier, Y.-G. Gangloff, S. Thuault, I. Davidson, and D. Moras (2002)
J. Biol. Chem.
277, 45502-45509
| Abstract »
| Full Text »
| PDF »
- Differential Requirement of SAGA Components for Recruitment of TATA-Box-Binding Protein to Promoters In Vivo.
- S. R. Bhaumik and M. R. Green (2002)
Mol. Cell. Biol.
22, 7365-7371
| Abstract »
| Full Text »
| PDF »
- The RNA polymerase II core promoter: a key component in the regulation of gene expression.
- J. E.F. Butler and J. T. Kadonaga (2002)
Genes & Dev.
16, 2583-2592
| Full Text »
| PDF »
- Targeted Histone Acetylation at the Yeast CUP1 Promoter Requires the Transcriptional Activator, the TATA Boxes, and the Putative Histone Acetylase Encoded by SPT10.
- C.-H. Shen, B. P. Leblanc, C. Neal, R. Akhavan, and D. J. Clark (2002)
Mol. Cell. Biol.
22, 6406-6416
| Abstract »
| Full Text »
| PDF »
- Molecular Characterization of Saccharomyces cerevisiae TFIID.
- S. L. Sanders, K. A. Garbett, and P. A. Weil (2002)
Mol. Cell. Biol.
22, 6000-6013
| Abstract »
| Full Text »
| PDF »
- TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA.
- K. M. Johnson, J. Wang, A. Smallwood, C. Arayata, and M. Carey (2002)
Genes & Dev.
16, 1852-1863
| Abstract »
| Full Text »
| PDF »
- Proteomics of the Eukaryotic Transcription Machinery: Identification of Proteins Associated with Components of Yeast TFIID by Multidimensional Mass Spectrometry.
- S. L. Sanders, J. Jennings, A. Canutescu, A. J. Link, and P. A. Weil (2002)
Mol. Cell. Biol.
22, 4723-4738
| Abstract »
| Full Text »
| PDF »
- Distinct Mutations in Yeast TAFII25 Differentially Affect the Composition of TFIID and SAGA Complexes as Well as Global Gene Expression Patterns.
- D. B. Kirschner, E. vom Baur, C. Thibault, S. L. Sanders, Y.-G. Gangloff, I. Davidson, P. A. Weil, and L. Tora (2002)
Mol. Cell. Biol.
22, 3178-3193
| Abstract »
| Full Text »
| PDF »
- Developmental specificity of recruitment of TBP to the TATA box of the human gamma -globin gene.
- Z.-J. Duan, X. Fang, A. Rohde, H. Han, G. Stamatoyannopoulos, and Q. Li (2002)
PNAS
99, 5509-5514
| Abstract »
| Full Text »
| PDF »
- Evidence that TAF-TATA Box-Binding Protein Interactions Are Required for Activated Transcription in Mammalian Cells.
- L. S. Martel, H. J. Brown, and A. J. Berk (2002)
Mol. Cell. Biol.
22, 2788-2798
| Abstract »
| Full Text »
| PDF »
- TAFII250: a transcription toolbox.
- D. A. Wassarman and F. Sauer (2002)
J. Cell Sci.
114, 2895-2902
| Abstract »
| Full Text »
| PDF »
- Human STAGA Complex Is a Chromatin-Acetylating Transcription Coactivator That Interacts with Pre-mRNA Splicing and DNA Damage-Binding Factors In Vivo.
- E. Martinez, V. B. Palhan, A. Tjernberg, E. S. Lymar, A. M. Gamper, T. K. Kundu, B. T. Chait, and R. G. Roeder (2001)
Mol. Cell. Biol.
21, 6782-6795
| Abstract »
| Full Text »
| PDF »
- SAGA is an essential in vivo target of the yeast acidic activator Gal4p.
- S. R. Bhaumik and M. R. Green (2001)
Genes & Dev.
15, 1935-1945
| Abstract »
| Full Text »
| PDF »
- The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4.
- E. Larschan and F. Winston (2001)
Genes & Dev.
15, 1946-1956
| Abstract »
| Full Text »
| PDF »
- Yeast NC2 Associates with the RNA Polymerase II Preinitiation Complex and Selectively Affects Transcription In Vivo.
- J. V. Geisberg, F. C. Holstege, R. A. Young, and K. Struhl (2001)
Mol. Cell. Biol.
21, 2736-2742
| Abstract »
| Full Text »
- Developmental regulation of transcription by a tissue-specific TAF homolog.
- M. A. Hiller, T.-Y. Lin, C. Wood, and M. T. Fuller (2001)
Genes & Dev.
15, 1021-1030
| Abstract »
| Full Text »
- Heterozygous Disruption of the TATA-Binding Protein Gene in DT40 Cells Causes Reduced cdc25B Phosphatase Expression and Delayed Mitosis.
- M. Um, J. Yamauchi, S. Kato, and J. L. Manley (2001)
Mol. Cell. Biol.
21, 2435-2448
| Abstract »
| Full Text »
- TFIIA Interacts with TFIID via Association with TATA-Binding Protein and TAF40.
- S. M. Kraemer, R. T. Ranallo, R. C. Ogg, and L. A. Stargell (2001)
Mol. Cell. Biol.
21, 1737-1746
| Abstract »
| Full Text »
- Region of Yeast TAF 130 Required for TFIID To Associate with Promoters.
- M. Mencía and K. Struhl (2001)
Mol. Cell. Biol.
21, 1145-1154
| Abstract »
| Full Text »
- TAF-Containing and TAF-Independent Forms of Transcriptionally Active TBP in Vivo.
- L. Kuras, P. Kosa, M. Mencia, and K. Struhl (2000)
Science
288, 1244-1248
| Abstract »
| Full Text »
- Mutations in the TATA-binding Protein, Affecting Transcriptional Activation, Show Synthetic Lethality with the TAF145 Gene Lacking the TAF N-terminal Domain in Saccharomyces cerevisiae.
- A. Kobayashi, T. Miyake, Y. Ohyama, M. Kawaichi, and T. Kokubo (2001)
J. Biol. Chem.
276, 395-405
| Abstract »
| Full Text »
| PDF »
- Chromatin Is Permissive to TATA-binding Protein (TBP)-mediated Transcription Initiation.
- E. Remboutsika, X. Jacq, and L. Tora (2001)
J. Biol. Chem.
276, 12781-12784
| Abstract »
| Full Text »
| PDF »
- TATA-binding Protein-associated Factors Enhance the Recruitment of RNA Polymerase II by Transcriptional Activators.
- S.-Y. Wu and C.-M. Chiang (2001)
J. Biol. Chem.
276, 34235-34243
| Abstract »
| Full Text »
| PDF »
- Fluorescence-based Analyses of the Effects of Full-length Recombinant TAF130p on the Interaction of TATA Box-binding Protein with TATA Box DNA.
- U. Banik, J. M. Beechem, E. Klebanow, S. Schroeder, and P. A. Weil (2001)
J. Biol. Chem.
276, 49100-49109
| Abstract »
| Full Text »
| PDF »
|
|