Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 11 June 1999:
Vol. 284. no. 5421, pp. 1816 - 1819
DOI: 10.1126/science.284.5421.1816

Reports

Reconstructing Phylogeny with and without Temporal Data

David L. Fox, * Daniel C. Fisher, Lindsey R. Leighton

Conventional cladistic methods of inferring evolutionary relationships exclude temporal data from the initial search for optimal hypotheses, but stratocladistics includes such data. A comparison of the ability of these methods to recover known, simulated evolutionary histories given the same, evolved character data shows that stratocladistics recovers the true phylogeny in over twice as many cases as cladistics (42 versus 18 percent). The comparison involved 550 unique taxon-by-character matrices, representing 15 evolutionary models and fossil records ranging from 100 to 10 percent complete.

Museum of Paleontology, University of Michigan, 1109 Geddes Road, Ann Arbor, MI 48109-1079, USA.
*   To whom correspondence should be addressed. E-mail: dlfox{at}umich.edu


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Fossil and molecular evidence constrain scenarios for the early evolutionary and biogeographic history of hystricognathous rodents.
H. M. Sallam, E. R. Seiffert, M. E. Steiper, and E. L. Simons (2009)
PNAS 106, 16722-16727
   Abstract »    Full Text »    PDF »
Estimating Evolution of Temporal Sequence Changes: A Practical Approach to Inferring Ancestral Developmental Sequences and Sequence Heterochrony.
L. B. Harrison and H. C. E. Larsson (2008)
Syst Biol 57, 378-387
   Abstract »    Full Text »    PDF »
Scale-dependence of Cope's rule in body size evolution of Paleozoic brachiopods.
P. M. Novack-Gottshall and M. A. Lanier (2008)
PNAS 105, 5430-5434
   Abstract »    Full Text »    PDF »
Uncertainty in the Age of Fossils and the Stratigraphic Fit to Phylogenies.
D. Pol and M. A. Norell (2006)
Syst Biol 55, 512-521
   Abstract »    Full Text »    PDF »
Exploring new uses for measures of fit of phylogenetic hypotheses to the fossil record.
K. D. Angielczyk and D. L. Fox (2006)
Paleobiology 32, 147-165
   Abstract »    Full Text »    PDF »
Ancestor-descendant relationships and the reconstruction of the Tree of Life.
B. Dayrat (2005)
Paleobiology 31, 347-353
   Full Text »    PDF »
Integrating ichnofossil and body fossil records to estimate locomotor posture and spatiotemporal distribution of early sauropod dinosaurs: a stratocladistic approach.
J. A. Wilson (2005)
Paleobiology 31, 400-423
   Abstract »    Full Text »    PDF »
Reassessing hominoid phylogeny: evaluating congruence in the morphological and temporal data.
(2004)
Paleobiology 30, 614-651
BLASTOID STRATOCLADISTICS--REPLY TO SUMRALL AND BROCHU.
(2003)
Journal of Paleontology 77, 195-198
STRATIGRAPHY IN PHYLOGENY RECONSTRUCTION--COMMENT ON SMITH (2000).
(2002)
Journal of Paleontology 76, 585-586
EVALUATING INTERNAL VERSUS EXTERNAL CHARACTERS: PHYLOGENETIC ANALYSES OF THE ECHINOCONCHIDAE, BUXTONIINAE, AND JURESANIINAE (PHYLUM BRACHIOPODA).
(2002)
Journal of Paleontology 76, 659-671
STRATIGRAPHY IN PHYLOGENY RECONSTRUCTION--REPLY TO SMITH (2000).
(2002)
Journal of Paleontology 76, 587-589
TESTING PHYLOGENETIC HYPOTHESES WITH STRATIGRAPHY AND MORPHOLOGY--A COMMENT ON SMITH (2000).
(2002)
Journal of Paleontology 76, 590-593
Inferring temporal patterns of preservation, origination, and extinction from taxonomic survivorship analysis.
(2001)
Paleobiology 27, 602-630
GHOSTS OF THE PAST, PRESENT, AND FUTURE IN BRACHIOPOD SYSTEMATICS.
(2001)
Journal of Paleontology 75, 1109-1118
GASTROPOD PHYLOGENETICS: PROGRESS, PROBLEMS, AND IMPLICATIONS.
(2001)
Journal of Paleontology 75, 1128-1140
Taxon distributions and the tetrapod track record.
(2001)
Paleobiology 27, 564-582
STRATOCLADISTIC ANALYSIS OF BLASTOID PHYLOGENY.
B. E. BODENBENDER and D. C. FISHER (2001)
Journal of Paleontology 75, 351-369
   Abstract »    Full Text »    PDF »
Character distributions are phylogenetic evidence.
(2001)
Paleobiology 27, 172-173
Modern phylogenetics in paleontology: comments on Vermeij 1999.
(2001)
Paleobiology 27, 174-176
Timeless characters: a response to Vermeij (1999).
(2001)
Paleobiology 27, 177-178
The muricid gastropod subfamily Rapaninae: phylogeny and ecological history.
(2000)
Paleobiology 26, 19-46
Cretaceous Sauropods from the Sahara and the Uneven Rate of Skeletal Evolution Among Dinosaurs.
P. C. Sereno, A. L. Beck, D. B. Dutheil, H. C. Larsson, G. H. Lyon, B. Moussa, R. W. Sadleir, C. A. Sidor, D. J. Varricchio, G. P. Wilson, et al. (1999)
Science 286, 1342-1347
   Abstract »    Full Text »
Phylogenies, Temporal Data, and Negative Evidence.
J. E. Heyning, C. Thacker;, D. C. Fisher, D. L. Fox, and L. R. Leighton; (1999)
Science 285, 1179a-1179
   Full Text »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)