Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 12 March 1999:
Vol. 283. no. 5408, pp. 1689 - 1695
DOI: 10.1126/science.283.5408.1689

Review

Single-Molecule Biomechanics with Optical Methods

Amit D. Mehta, 1 Matthias Rief, 1 James A. Spudich, 1* David A. Smith, 2 Robert M. Simmons 2*

Single-molecule observation and manipulation have come of age. With the advent of optical tweezers and other methods for probing and imaging single molecules, investigators have circumvented the model-dependent extrapolation from ensemble assays that has been the hallmark of classical biochemistry and biophysics. In recent years, there have been important advances in the understanding of how motor proteins work. The range of these technologies has also started to expand into areas such as DNA transcription and protein folding. Here, recent experiments with rotary motors, linear motors, RNA polymerase, and titin are described.

1 Department of Biochemistry B400, Stanford University School of Medicine, Stanford, CA 94305-5307, USA.
2 Randall Institute, King's College London, 26-29 Drury Lane, London WC2B 5RL, UK.
*   To whom correspondence should be addressed.


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Continuous imaging of plasmon rulers in live cells reveals early-stage caspase-3 activation at the single-molecule level.
Y.-w. Jun, S. Sheikholeslami, D. R. Hostetter, C. Tajon, C. S. Craik, and A. P. Alivisatos (2009)
PNAS 106, 17735-17740
   Abstract »    Full Text »    PDF »
A 16-bit parallel processing in a molecular assembly.
A. Bandyopadhyay and S. Acharya (2008)
PNAS 105, 3668-3672
   Abstract »    Full Text »    PDF »
Single-molecule biophysics: at the interface of biology, physics and chemistry.
A. A Deniz, S. Mukhopadhyay, and E. A Lemke (2008)
J R Soc Interface 5, 15-45
   Abstract »    Full Text »    PDF »
From the Cover: Memory in receptor-ligand-mediated cell adhesion.
V. I. Zarnitsyna, J. Huang, F. Zhang, Y.-H. Chien, D. Leckband, and C. Zhu (2007)
PNAS 104, 18037-18042
   Abstract »    Full Text »    PDF »
Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability.
D. N. Fuller, D. M. Raymer, V. I. Kottadiel, V. B. Rao, and D. E. Smith (2007)
PNAS 104, 16868-16873
   Abstract »    Full Text »    PDF »
Myosin V stepping mechanism.
G. Cappello, P. Pierobon, C. Symonds, L. Busoni, J. Christof, M. Gebhardt, M. Rief, and J. Prost (2007)
PNAS 104, 15328-15333
   Abstract »    Full Text »    PDF »
Characterization of actomyosin bond properties in intact skeletal muscle by force spectroscopy.
B. Colombini, M. A. Bagni, G. Romano, and G. Cecchi (2007)
PNAS 104, 9284-9289
   Abstract »    Full Text »    PDF »
Single-Molecule Experiments in Vitro and in Silico.
M. Sotomayor and K. Schulten (2007)
Science 316, 1144-1148
   Abstract »    Full Text »    PDF »
From the Cover: Single M13 bacteriophage tethering and stretching.
A. S. Khalil, J. M. Ferrer, R. R. Brau, S. T. Kottmann, C. J. Noren, M. J. Lang, and A. M. Belcher (2007)
PNAS 104, 4892-4897
   Abstract »    Full Text »    PDF »
Differential detection of dual traps improves the spatial resolution of optical tweezers.
J. R. Moffitt, Y. R. Chemla, D. Izhaky, and C. Bustamante (2006)
PNAS 103, 9006-9011
   Abstract »    Full Text »    PDF »
Nano measurements with micro-devices: mechanical properties of hydrated collagen fibrils.
S.J Eppell, B.N Smith, H Kahn, and R Ballarini (2006)
J R Soc Interface 3, 117-121
   Abstract »    Full Text »    PDF »
Strong physical constraints on sequence-specific target location by proteins on DNA molecules..
H. Flyvbjerg, S. A. Keatch, and D. T.F. Dryden (2006)
Nucleic Acids Res. 34, 2550-2557
   Abstract »    Full Text »    PDF »
Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli.
T. Kruse, B. Blagoev, A. Lobner-Olesen, M. Wachi, K. Sasaki, N. Iwai, M. Mann, and K. Gerdes (2006)
Genes & Dev. 20, 113-124
   Abstract »    Full Text »    PDF »
StpA protein from Escherichia coli condenses supercoiled DNA in preference to linear DNA and protects it from digestion by DNase I and EcoKI.
S. A. Keatch, P. G. Leonard, J. E. Ladbury, and D. T. F. Dryden (2005)
Nucleic Acids Res. 33, 6540-6546
   Abstract »    Full Text »    PDF »
Protein synthesis by single ribosomes.
F. VANZI, S. VLADIMIROV, C. R. KNUDSEN, Y. E. GOLDMAN, and B. S. COOPERMAN (2003)
RNA 9, 1174-1179
   Abstract »    Full Text »    PDF »
Single metallic nanoparticle imaging for protein detection in cells.
L. Cognet, C. Tardin, D. Boyer, D. Choquet, P. Tamarat, and B. Lounis (2003)
PNAS 100, 11350-11355
   Abstract »    Full Text »    PDF »
A force-based protein biochip.
K. Blank, T. Mai, I. Gilbert, S. Schiffmann, J. Rankl, R. Zivin, C. Tackney, T. Nicolaus, K. Spinnler, F. Oesterhelt, et al. (2003)
PNAS 100, 11356-11360
   Abstract »    Full Text »    PDF »
A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate.
E. Tan, T. J. Wilson, M. K. Nahas, R. M. Clegg, D. M. J. Lilley, and T. Ha (2003)
PNAS 100, 9308-9313
   Abstract »    Full Text »    PDF »
Shrinking the Biologic World--Nanobiotechnologies for Toxicology.
T. J. Zieziulewicz, D. W. Unfricht, N. Hadjout, M. A. Lynes, and D. A. Lawrence (2003)
Toxicol. Sci. 74, 235-244
   Abstract »    Full Text »    PDF »
DNA: A Programmable Force Sensor.
C. Albrecht, K. Blank, M. Lalic-Multhaler, S. Hirler, T. Mai, I. Gilbert, S. Schiffmann, T. Bayer, H. Clausen-Schaumann, and H. E. Gaub (2003)
Science 301, 367-370
   Abstract »    Full Text »    PDF »
Tensegrity II. How structural networks influence cellular information processing networks.
D. E. Ingber (2003)
J. Cell Sci. 116, 1397-1408
   Abstract »    Full Text »    PDF »
Tensegrity I. Cell structure and hierarchical systems biology.
D. E. Ingber (2003)
J. Cell Sci. 116, 1157-1173
   Abstract »    Full Text »    PDF »
Memory effects and oscillations in single-molecule kinetics.
M. O. Vlad, F. Moran, F. W. Schneider, and J. Ross (2002)
PNAS 99, 12548-12555
   Abstract »    Full Text »    PDF »
Structural rearrangements in single ion channels detected optically in living cells.
A. Sonnleitner, L. M. Mannuzzu, S. Terakawa, and E. Y. Isacoff (2002)
PNAS 99, 12759-12764
   Abstract »    Full Text »    PDF »
Single molecules.
Th. Basche, S. Nie, and J. M. Fernandez (2001)
PNAS 98, 10527-10528
   Full Text »    PDF »
The extrusion-capture model for chromosome partitioning in bacteria.
K. P. Lemon and A. D. Grossman (2001)
Genes & Dev. 15, 2031-2041
   Full Text »    PDF »
Tuning DNA ""strings"": Modulating the rate of DNA replication with mechanical tension.
A. Goel, M. D. Frank-Kamenetskii, T. Ellenberger, and D. Herschbach (2001)
PNAS
   Abstract »    Full Text »    PDF »
Myosin learns to walk.
A. Mehta (2001)
J. Cell Sci. 114, 1981-1998
   Abstract »    Full Text »    PDF »
Memory landscapes of single-enzyme molecules.
L. Edman and R. Rigler (2000)
PNAS
   Abstract »    Full Text »
Free Energy Requirement for Domain Movement of an Enzyme.
J. Ishijima, T. Nakai, S.-i. Kawaguchi, K. Hirotsu, and S. Kuramitsu (2000)
J. Biol. Chem. 275, 18939-18945
   Abstract »    Full Text »    PDF »
Mechanical Rotation of the c Subunit Oligomer in ATP Synthase (F0F1): Direct Observation.
Y. Sambongi, Y. Iko, M. Tanabe, H. Omote, A. Iwamoto-Kihara, I. Ueda, T. Yanagida, Y. Wada, and M. Futai (1999)
Science 286, 1722-1724
   Abstract »    Full Text »
Myosin II Folding Is Mediated by a Molecular Chaperonin.
R. Srikakulam and D. A. Winkelmann (1999)
J. Biol. Chem. 274, 27265-27273
   Abstract »    Full Text »    PDF »
Illuminating Single Molecules in Condensed Matter.
W. E. Moerner and M. Orrit (1999)
Science 283, 1670-1676
   Abstract »    Full Text »
Fluorescence Spectroscopy of Single Biomolecules.
S. Weiss (1999)
Science 283, 1676-1683
   Abstract »    Full Text »
Unfolding proteins by external forces and temperature: The importance of topology and energetics.
E. Paci and M. Karplus (2000)
PNAS 97, 6521-6526
   Abstract »    Full Text »    PDF »
Memory landscapes of single-enzyme molecules.
L. Edman and R. Rigler (2000)
PNAS 97, 8266-8271
   Abstract »    Full Text »    PDF »
Tuning DNA "strings": Modulating the rate of DNA replication with mechanical tension.
A. Goel, M. D. Frank-Kamenetskii, T. Ellenberger, and D. Herschbach (2001)
PNAS 98, 8485-8489
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)