Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 4 September 1998: Vol. 281. no. 5382, pp. 1502 - 1505 DOI: 10.1126/science.281.5382.1502
|
|
Reports
Segregation of Transcription and Replication Sites Into Higher Order Domains
Xiangyun Wei,
Jagath Samarabandu,
*
Rakendu
S. Devdhar,
Alan J. Siegel,
Raj Acharya,
Ronald Berezney
Microscopy shows that individual sites of DNA replication and
transcription of mammalian nuclei segregate into sets of roughly 22 and
16 higher order domains, respectively. Each domain set displayed a
distinct network-like appearance, including regions of individual
domains and interdigitation of domains between the two networks. These
data support a dynamic mosaic model for the higher order arrangement of
genomic function inside the cell nuclei.
X. Wei, J. Samarabandu, A. J. Siegel, R. Berezney,
Departments of Biological Sciences, State University of New York at
Buffalo, Buffalo, NY 14260, USA. R. S. Devdhar and R. Acharya,
Department of Electrical and Computer Engineering, State University of
New York at Buffalo, Buffalo, NY 14260, USA.
*
Present address: Life Imaging Systems, 195 Dufferin Avenue, Suite 300, London, Ontario N6A1K7, Canada.
To whom correspondence should be addressed. E-mail:
berezney{at}acsu.buffalo.edu
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Proliferation-dependent and cell cycle regulated transcription of mouse pericentric heterochromatin.
- J. Lu and D. M. Gilbert (2007)
J. Cell Biol.
179, 411-421
| Abstract »
| Full Text »
| PDF »
- The Three-Dimensional Structure of Human Interphase Chromosomes Is Related to the Transcriptome Map.
- S. Goetze, J. Mateos-Langerak, H. J. Gierman, W. de Leeuw, O. Giromus, M. H. G. Indemans, J. Koster, V. Ondrej, R. Versteeg, and R. van Driel (2007)
Mol. Cell. Biol.
27, 4475-4487
| Abstract »
| Full Text »
| PDF »
- Association of Bovine Papillomavirus E2 Protein with Nuclear Structures In Vivo.
- R. Kurg, K. Sild, A. Ilves, M. Sepp, and M. Ustav (2005)
J. Virol.
79, 10528-10539
| Abstract »
| Full Text »
| PDF »
- Nuclear Matrix Binding Regulates SATB1-mediated Transcriptional Repression.
- J. Seo, M. M. Lozano, and J. P. Dudley (2005)
J. Biol. Chem.
280, 24600-24609
| Abstract »
| Full Text »
| PDF »
- Intranuclear Trafficking: Organization and Assembly of Regulatory Machinery for Combinatorial Biological Control.
- S. K. Zaidi, D. W. Young, J.-Y. Choi, J. Pratap, A. Javed, M. Montecino, J. L. Stein, J. B. Lian, A. J. van Wijnen, and G. S. Stein (2004)
J. Biol. Chem.
279, 43363-43366
| Abstract »
| Full Text »
| PDF »
- Mitotic partitioning and selective reorganization of tissue-specific transcription factors in progeny cells.
- S. K. Zaidi, D. W. Young, S. M. Pockwinse, A. Javed, J. B. Lian, J. L. Stein, A. J. van Wijnen, and G. S. Stein (2003)
PNAS
100, 14852-14857
| Abstract »
| Full Text »
| PDF »
- Gene positional changes relative to the nuclear substructure correlate with the proliferating status of hepatocytes during liver regeneration.
- A. Maya-Mendoza, R. Hernandez-Munoz, P. Gariglio, and A. Aranda-Anzaldo (2003)
Nucleic Acids Res.
31, 6168-6179
| Abstract »
| Full Text »
| PDF »
- Integration of Runx and Smad regulatory signals at transcriptionally active subnuclear sites.
- S. K. Zaidi, A. J. Sullivan, A. J. van Wijnen, J. L. Stein, G. S. Stein, and J. B. Lian (2002)
PNAS
99, 8048-8053
| Abstract »
| Full Text »
| PDF »
- The Newly Identified Human Nuclear Protein NXP-2 Possesses Three Distinct Domains, the Nuclear Matrix-binding, RNA-binding, and Coiled-coil Domains.
- Y. Kimura, F. Sakai, O. Nakano, O. Kisaki, H. Sugimoto, T. Sawamura, H. Sadano, and T. Osumi (2002)
J. Biol. Chem.
277, 20611-20617
| Abstract »
| Full Text »
| PDF »
- A novel interaction between lamin A and SREBP1: implications for partial lipodystrophy and other laminopathies.
- D. J. Lloyd, R. C. Trembath, and S. Shackleton (2002)
Hum. Mol. Genet.
11, 769-777
| Abstract »
| Full Text »
| PDF »
- Transcription factors RUNX1/AML1 and RUNX2/Cbfa1 dynamically associate with stationary subnuclear domains.
- K. S. Harrington, A. Javed, H. Drissi, S. McNeil, J. B. Lian, J. L. Stein, A. J. van Wijnen, Y.-L. Wang, and G. S. Stein (2002)
J. Cell Sci.
115, 4167-4176
| Abstract »
| Full Text »
| PDF »
- The replication timing program of the Chinese hamster {beta}-globin locus is established coincident with its repositioning near peripheral heterochromatin in early G1 phase.
- F. Li, J. Chen, M. Izumi, M. C. Butler, S. M. Keezer, and D. M. Gilbert (2001)
J. Cell Biol.
154, 283-292
| Abstract »
| Full Text »
| PDF »
- Subnuclear targeting of Runx/Cbfa/AML factors is essential for tissue-specific differentiation during embryonic development.
- J.-Y. Choi, J. Pratap, A. Javed, S. K. Zaidi, L. Xing, E. Balint, S. Dalamangas, B. Boyce, A. J. van Wijnen, J. B. Lian, et al. (2001)
PNAS
| Abstract »
| Full Text »
| PDF »
- A specific targeting signal directs Runx2/Cbfa1 to subnuclear domains and contributes to transactivation of the osteocalcin gene.
- S. K. Zaidi, A. Javed, J.-Y. Choi, A. J. van Wijnen, J. L. Stein, J. B. Lian, and G. S. Stein (2001)
J. Cell Sci.
114, 3093-3102
| Abstract »
| Full Text »
| PDF »
- The ER Repeat Protein YT521-B Localizes to a Novel Subnuclear Compartment.
- O. Nayler, A. M. Hartmann, and S. Stamm (2000)
J. Cell Biol.
150, 949-962
| Abstract »
| Full Text »
| PDF »
- Nuclear Structure-Gene Expression Interrelationships: Implications for Aberrant Gene Expression in Cancer.
- G. S. Stein, M. Montecino, A. J. van Wijnen, J. L. Stein, and J. B. Lian (2000)
Cancer Res.
60, 2067-2076
| Abstract »
| Full Text »
- Nuclear Matrix Attachment Regions of Human Papillomavirus Type 16 Repress or Activate the E6 Promoter, Depending on the Physical State of the Viral DNA.
- W. Stünkel, Z. Huang, S.-H. Tan, M. J. O'Connor, and H.-U. Bernard (2000)
J. Virol.
74, 2489-2501
| Abstract »
| Full Text »
- Intranuclear trafficking of transcription factors: implications for biological control.
- G. Stein, A. van Wijnen, J. Stein, J. Lian, M Montecino, J Choi, K Zaidi, and A Javed (2000)
J. Cell Sci.
113, 2527-2533
| Abstract »
| PDF »
- The t(8;21) chromosomal translocation in acute myelogenous leukemia modifies intranuclear targeting of the AML1/CBFalpha 2 transcription factor.
- S. McNeil, C. Zeng, K. S. Harrington, S. Hiebert, J. B. Lian, J. L. Stein, A. J. van Wijnen, and G. S. Stein (1999)
PNAS
96, 14882-14887
| Abstract »
| Full Text »
| PDF »
- Crystal Structure of the Nuclear Matrix Targeting Signal of the Transcription Factor Acute Myelogenous Leukemia-1/Polyoma Enhancer-binding Protein 2alpha B/Core Binding Factor alpha 2.
- L. Tang, B. Guo, A. Javed, J.-Y. Choi, S. Hiebert, J. B. Lian, A. J. van Wijnen, J. L. Stein, G. S. Stein, and G. W. Zhou (1999)
J. Biol. Chem.
274, 33580-33586
| Abstract »
| Full Text »
| PDF »
- PML Is Critical for ND10 Formation and Recruits the PML-interacting Protein Daxx to this Nuclear Structure When Modified by SUMO-1.
- A. M. Ishov, A. G. Sotnikov, D. Negorev, O. V. Vladimirova, N. Neff, T. Kamitani, E. T.H. Yeh, J. F. Strauss , III, and G. G. Maul (1999)
J. Cell Biol.
147, 221-234
| Abstract »
| Full Text »
| PDF »
- MAF1, a Novel Plant Protein Interacting with Matrix Attachment Region Binding Protein MFP1, Is Located at the Nuclear Envelope.
- F. Gindullis, N. J. Peffer, and I. Meier (1999)
PLANT CELL
11, 1755-1768
| Abstract »
| Full Text »
- Association of Chromosome Territories with the Nuclear Matrix: Disruption of Human Chromosome Territories Correlates with the Release of a Subset of Nuclear Matrix Proteins.
- H. Ma, A. J. Siegel, and R. Berezney (1999)
J. Cell Biol.
146, 531-542
| Abstract »
| Full Text »
| PDF »
- Three-dimensional Visualization of Transcription Sites and Their Association with Splicing Factor–rich Nuclear Speckles.
- X. Wei, S. Somanathan, J. Samarabandu, and R. Berezney (1999)
J. Cell Biol.
146, 543-558
| Abstract »
| Full Text »
| PDF »
- Intron-independent Association of Splicing Factors with Active Genes.
- C. Jolly, C. Vourc'h, M. Robert-Nicoud, and R. I. Morimoto (1999)
J. Cell Biol.
145, 1133-1143
| Abstract »
| Full Text »
| PDF »
- The Nucleocytoplasmic Continuum: Pushing the (Nuclear) Envelope.
- H. B. Smith (1999)
PLANT CELL
11, 989-991
| Full Text »
- Matrix Attachment Region Binding Protein MFP1 Is Localized in Discrete Domains at the Nuclear Envelope.
- F. Gindullis and I. Meier (1999)
PLANT CELL
11, 1117-1128
| Abstract »
| Full Text »
- Implications for interrelationships between nuclear architecture and control of gene expression under microgravity conditions.
- G. S. STEIN, A. J. VAN WIJNEN, J. L. STEIN, J. B. LIAN, S. H. POCKWINSE, and S. MCNEIL (1999)
FASEB J
13, 157-166
| Abstract »
| Full Text »
| PDF »
- Spatial and Temporal Dynamics of DNA Replication Sites in Mammalian Cells.
- H. Ma, J. Samarabandu, R. S. Devdhar, R. Acharya, P.-c. Cheng, C. Meng, and R. Berezney (1998)
J. Cell Biol.
143, 1415-1425
| Abstract »
| Full Text »
| PDF »
- Subnuclear targeting of Runx/Cbfa/AML factors is essential for tissue-specific differentiation during embryonic development.
- J.-Y. Choi, J. Pratap, A. Javed, S. K. Zaidi, L. Xing, E. Balint, S. Dalamangas, B. Boyce, A. J. van Wijnen, J. B. Lian, et al. (2001)
PNAS
98, 8650-8655
| Abstract »
| Full Text »
| PDF »
|
|