Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 7 November 1997:
Vol. 278. no. 5340, pp. 1128 - 1132
DOI: 10.1126/science.278.5340.1128

Reports

A Low-Barrier Hydrogen Bond in the Catalytic Triad of Serine Proteases? Theory Versus Experiment

Elissa L. Ash, James L. Sudmeier, Edward C. De Fabo, William W. Bachovchin *

Cleland and Kreevoy recently advanced the idea that a special type of hydrogen bond (H-bond), termed a low-barrier hydrogen bond (LBHB), may account for the "missing" transition state stabilization underlying the catalytic power of many enzymes, and Frey et al. have proposed that the H-bond between aspartic acid 102 and histidine 57 in the catalytic triad of serine proteases is an example of a catalytically important LBHB. Experimental facts are here considered regarding the aspartic acid-histidine and cis-urocanic H-bonds that are inconsistent with fundamental tenets of the LBHB hypothesis. The inconsistencies between theory and experiment in these paradigm systems cast doubt on the existence of LBHBs, as currently defined, within enzyme active sites.

E. L. Ash, J. L. Sudmeier, W. W. Bachovchin, Department of Biochemistry, Tufts University School of Medicine, Boston, MA 02111, USA.
E. C. De Fabo, Department of Dermatology, George Washington University School of Medicine, Washington, DC 20037, USA.
*   To whom correspondence should be addressed.


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Low-barrier hydrogen bond in photoactive yellow protein.
S. Yamaguchi, H. Kamikubo, K. Kurihara, R. Kuroki, N. Niimura, N. Shimizu, Y. Yamazaki, and M. Kataoka (2009)
PNAS 106, 440-444
   Abstract »    Full Text »    PDF »
Tautomerism of Histidine 64 Associated with Proton Transfer in Catalysis of Carbonic Anhydrase.
H. Shimahara, T. Yoshida, Y. Shibata, M. Shimizu, Y. Kyogoku, F. Sakiyama, T. Nakazawa, S.-i. Tate, S.-y. Ohki, T. Kato, et al. (2007)
J. Biol. Chem. 282, 9646-9656
   Abstract »    Full Text »    PDF »
Cis-urocanic acid, a sunlight-induced immunosuppressive factor, activates immune suppression via the 5-HT2A receptor.
J. P. Walterscheid, D. X. Nghiem, N. Kazimi, L. K. Nutt, D. J. McConkey, M. Norval, and S. E. Ullrich (2006)
PNAS 103, 17420-17425
   Abstract »    Full Text »    PDF »
Histidines, heart of the hydrogen ion channel from influenza A virus: Toward an understanding of conductance and proton selectivity.
J. Hu, R. Fu, K. Nishimura, L. Zhang, H.-X. Zhou, D. D. Busath, V. Vijayvergiya, and T. A. Cross (2006)
PNAS 103, 6865-6870
   Abstract »    Full Text »    PDF »
The Catalytic Role of Aspartate in a Short Strong Hydrogen Bond of the Asp274-His32 Catalytic Dyad in Phosphatidylinositol-specific Phospholipase C Can Be Substituted by a Chloride Ion.
L. Zhao, H. Liao, and M.-D. Tsai (2004)
J. Biol. Chem. 279, 31995-32000
   Abstract »    Full Text »    PDF »
Observation of a Short, Strong Hydrogen Bond in the Active Site of Hydroxynitrile Lyase from Hevea brasiliensis Explains a Large pKa Shift of the Catalytic Base Induced by the Reaction Intermediate.
G. R. Stranzl, K. Gruber, G. Steinkellner, K. Zangger, H. Schwab, and C. Kratky (2004)
J. Biol. Chem. 279, 3699-3707
   Abstract »    Full Text »    PDF »
X-ray Structure of a Serine Protease Acyl-Enzyme Complex at 0.95-A Resolution.
G. Katona, R. C. Wilmouth, P. A. Wright, G. I. Berglund, J. Hajdu, R. Neutze, and C. J. Schofield (2002)
J. Biol. Chem. 277, 21962-21970
   Abstract »    Full Text »    PDF »
Unusual 1H NMR chemical shifts support (His) Cepsilon 1---H{middle dot}{middle dot}{middle dot}O==C H-bond: Proposal for reaction-driven ring flip mechanism in serine protease catalysis.
E. L. Ash, J. L. Sudmeier, R. M. Day, M. Vincent, E. V. Torchilin, K. C. Haddad, E. M. Bradshaw, D. G. Sanford, and W. W. Bachovchin (2000)
PNAS 97, 10371-10376
   Abstract »    Full Text »    PDF »
Catalytic role of enzymes: Short strong H-bond-induced partial proton shuttles and charge redistributions.
K. S. Kim, K. S. Oh, and J. Y. Lee (2000)
PNAS 97, 6373-6378
   Abstract »    Full Text »    PDF »
Crystal Structure of Delta 5-3-Ketosteroid Isomerase from Pseudomonas testosteroni in Complex with Equilenin Settles the Correct Hydrogen Bonding Scheme for Transition State Stabilization.
H.-S. Cho, N.-C. Ha, G. Choi, H.-J. Kim, D. Lee, K. S. Oh, K. S. Kim, W. Lee, K. Y. Choi, and B.-H. Oh (1999)
J. Biol. Chem. 274, 32863-32868
   Abstract »    Full Text »    PDF »
Electrostatic Origin of the Catalytic Power of Enzymes and the Role of Preorganized Active Sites.
A. Warshel (1998)
J. Biol. Chem. 273, 27035-27038
   Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)