Related Content
Search Google Scholar for:
More Information
Related Jobs from ScienceCareers
|
|
Science 22 August 1997: Vol. 277. no. 5329, pp. 1100 - 1103 DOI: 10.1126/science.277.5329.1100
|
|
Reports
Hypermethylated SUPERMAN Epigenetic Alleles in Arabidopsis
Steven E. Jacobsen,
Elliot M. Meyerowitz
*
Mutations in the SUPERMAN gene affect flower development
in Arabidopsis. Seven heritable but unstable sup
epi-alleles (the clark kent alleles) are associated with
nearly identical patterns of excess cytosine methylation within the
SUP gene and a decreased level of SUP RNA.
Revertants of these alleles are largely demethylated at the
SUP locus and have restored levels of SUP RNA. A
transgenic Arabidopsis line carrying an antisense
methyltransferase gene, which shows an overall decrease in genomic
cytosine methylation, also contains a hypermethylated sup
allele. Thus, disruption of methylation systems may yield more complex
outcomes than expected and can result in methylation defects at known
genes. The clark kent alleles differ from the antisense line
because they do not show a general decrease in genomic methylation.
Division of Biology 156-29, California Institute of Technology,
Pasadena, CA 91125, USA.
*
To whom correspondence should be addressed.
Read the Full Text
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression.
- J. D. Hollister and B. S. Gaut (2009)
Genome Res.
19, 1419-1428
| Abstract »
| Full Text »
| PDF »
- Time to Stop: Flower Meristem Termination.
- N. Prunet, P. Morel, I. Negrutiu, and C. Trehin (2009)
Plant Physiology
150, 1764-1772
| Full Text »
| PDF »
- Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies.
- D. P. Genereux, W. C. Johnson, A. F. Burden, R. Stoger, and C. D. Laird (2008)
Nucleic Acids Res.
36, e150
| Abstract »
| Full Text »
| PDF »
- Signaling silence--breaking ground and spreading out.
- H. R. Woo and E. J. Richards (2008)
Genes & Dev.
22, 1719-1723
| Abstract »
| Full Text »
| PDF »
- The Epigenetic Landscape of Plants.
- X. Zhang (2008)
Science
320, 489-492
| Abstract »
| Full Text »
| PDF »
- Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion.
- J. Reinders, C. Delucinge Vivier, G. Theiler, D. Chollet, P. Descombes, and J. Paszkowski (2008)
Genome Res.
18, 469-476
| Abstract »
| Full Text »
| PDF »
- Epigenetic Modifications of Distinct Sequences of the p1 Regulatory Gene Specify Tissue-Specific Expression Patterns in Maize.
- R. S. Sekhon, T. Peterson, and S. Chopra (2007)
Genetics
175, 1059-1070
| Abstract »
| Full Text »
| PDF »
- Genetic Analyses of DNA Methyltransferases in Arabidopsis thaliana.
- X. ZHANG and S.E. JACOBSEN (2006)
Cold Spring Harb Symp Quant Biol
71, 439-447
| Abstract »
| PDF »
- Epigenetics and its Implications for Plant Biology. 1. The Epigenetic Network in Plants.
- R. T. GRANT-DOWNTON and H. G. DICKINSON (2005)
Ann. Bot.
96, 1143-1164
| Abstract »
| Full Text »
| PDF »
- Both Hypomethylation and Hypermethylation in a 0.2-kb Region of a DNA Repeat in Cancer.
- R. Nishiyama, L. Qi, M. Lacey, and M. Ehrlich (2005)
Mol. Cancer Res.
3, 617-626
| Abstract »
| Full Text »
| PDF »
- The Recessive Epigenetic swellmap Mutation Affects the Expression of Two Step II Splicing Factors Required for the Transcription of the Cell Proliferation Gene STRUWWELPETER and for the Timing of Cell Cycle Arrest in the Arabidopsis Leaf.
- N. K. Clay and T. Nelson (2005)
PLANT CELL
17, 1994-2008
| Abstract »
| Full Text »
| PDF »
- Allele-Specific Assay Reveals Functional Variation in the Chalcone Synthase Promoter of Arabidopsis thaliana That Is Compatible with Neutral Evolution.
- J. de Meaux, U. Goebel, A. Pop, and T. Mitchell-Olds (2005)
PLANT CELL
17, 676-690
| Abstract »
| Full Text »
| PDF »
- Epigenetic Control of CACTA Transposon Mobility in Arabidopsis thaliana.
- M. Kato, K. Takashima, and T. Kakutani (2004)
Genetics
168, 961-969
| Abstract »
| Full Text »
| PDF »
- One-Way Control of FWA Imprinting in Arabidopsis Endosperm by DNA Methylation.
- T. Kinoshita, A. Miura, Y. Choi, Y. Kinoshita, X. Cao, S. E. Jacobsen, R. L. Fischer, and T. Kakutani (2004)
Science
303, 521-523
| Abstract »
| Full Text »
| PDF »
- From The Cover: Hairpin-bisulfite PCR: Assessing epigenetic methylation patterns on complementary strands of individual DNA molecules.
- C. D. Laird, N. D. Pleasant, A. D. Clark, J. L. Sneeden, K. M. A. Hassan, N. C. Manley, J. C. Vary Jr., T. Morgan, R. S. Hansen, and R. Stoger (2004)
PNAS
101, 204-209
| Abstract »
| Full Text »
| PDF »
- Control of Development and Transposon Movement by DNA Methylation in Arabidopsis thaliana.
- T. KAKUTANI, M. KATO, T. KINOSHITA, and A. MIURA (2004)
Cold Spring Harb Symp Quant Biol
69, 139-144
| Abstract »
| PDF »
- Induced and Natural Epigenetic Variation.
- H. YI, N.C. RIDDLE, T.L. STOKES, H.-R. WOO, and E.J. RICHARDS (2004)
Cold Spring Harb Symp Quant Biol
69, 155-160
| Abstract »
| PDF »
- Meiotic transmission of epigenetic changes in the cell-division factor requirement of plant cells.
- F. Meins Jr and M. Thomas (2003)
Development
130, 6201-6208
| Abstract »
| Full Text »
| PDF »
- Preferential de Novo Methylation of Cytosine Residues in Non-CpG Sequences by a Domains Rearranged DNA Methyltransferase from Tobacco Plants.
- Y. Wada, H. Ohya, Y. Yamaguchi, N. Koizumi, and H. Sano (2003)
J. Biol. Chem.
278, 42386-42393
| Abstract »
| Full Text »
| PDF »
- Strand-biased DNA methylation associated with centromeric regions in Arabidopsis.
- S. Luo and D. Preuss (2003)
PNAS
100, 11133-11138
| Abstract »
| Full Text »
| PDF »
- Genetic Control of Developmental Changes Induced by Disruption of Arabidopsis Histone Deacetylase 1 (AtHD1) Expression.
- L. Tian, J. Wang, M. P. Fong, M. Chen, H. Cao, S. B. Gelvin, and Z. J. Chen (2003)
Genetics
165, 399-409
| Abstract »
| Full Text »
| PDF »
- Nuclear Genes That Encode Mitochondrial Proteins for DNA and RNA Metabolism Are Clustered in the Arabidopsis Genome.
- A. Elo, A. Lyznik, D. O. Gonzalez, S. D. Kachman, and S. A. Mackenzie (2003)
PLANT CELL
15, 1619-1631
| Abstract »
| Full Text »
| PDF »
- Cytosine methylation occurs in a CDC48 homologue and a MADS-box gene during adventitious shoot induction in Petunia leaf explants1.
- A. P. Prakash, A. Kush, P. Lakshmanan, and P. P. Kumar (2003)
J. Exp. Bot.
54, 1361-1371
| Abstract »
| Full Text »
| PDF »
- ARGONAUTE4 Control of Locus-Specific siRNA Accumulation and DNA and Histone Methylation.
- D. Zilberman, X. Cao, and S. E. Jacobsen (2003)
Science
299, 716-719
| Abstract »
| Full Text »
| PDF »
- Epi-Alleles in Plants: Inheritance of Epigenetic Information over Generations.
- T. Kakutani (2002)
Plant Cell Physiol.
43, 1106-1111
| Abstract »
| Full Text »
| PDF »
- Methylation-Spanning Linker Libraries Link Gene-Rich Regions and Identify Epigenetic Boundaries in Zea mays.
- Y. Yuan, P. J. SanMiguel, and J. L. Bennetzen (2002)
Genome Res.
12, 1345-1349
| Abstract »
| Full Text »
| PDF »
- The Control of Natural Variation in Cytosine Methylation in Arabidopsis.
- N. C. Riddle and E. J. Richards (2002)
Genetics
162, 355-363
| Abstract »
| Full Text »
| PDF »
- Remodeling of DNA Methylation and Phenotypic and Transcriptional Changes in Synthetic Arabidopsis Allotetraploids.
- A. Madlung, R. W. Masuelli, B. Watson, S. H. Reynolds, J. Davison, and L. Comai (2002)
Plant Physiology
129, 733-746
| Abstract »
| Full Text »
| PDF »
- Induced instability of two Arabidopsis constitutive pathogen-response alleles.
- T. L. Stokes and E. J. Richards (2002)
PNAS
99, 7792-7796
| Abstract »
| Full Text »
| PDF »
- Epigenetic variation in Arabidopsis disease resistance.
- T. L. Stokes, B. N. Kunkel, and E. J. Richards (2002)
Genes & Dev.
16, 171-182
| Abstract »
| Full Text »
| PDF »
- Immunohistochemical study of DNA methylation dynamics during plant development.
- J. Zluvova, B. Janousek, and B. Vyskot (2001)
J. Exp. Bot.
52, 2265-2273
| Abstract »
| Full Text »
| PDF »
- Dioecious Plants. A Key to the Early Events of Sex Chromosome Evolution.
- I. Negrutiu, B. Vyskot, N. Barbacar, S. Georgiev, and F. Moneger (2001)
Plant Physiology
127, 1418-1424
| Full Text »
| PDF »
- DNA Methylation and Epigenetic Inheritance in Plants and Filamentous Fungi.
- R. A. Martienssen and V. Colot (2001)
Science
293, 1070-1074
| Abstract »
| Full Text »
| PDF »
- Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development.
- L. Tian and Z. J. Chen (2000)
PNAS
| Abstract »
| Full Text »
- Mum's the Word: MOM and Modifiers of Transcriptional Gene Silencing.
- T. L. Stokes and E. J. Richards (2000)
PLANT CELL
12, 1003-1006
| Full Text »
- Endogenous Targets of Transcriptional Gene Silencing in Arabidopsis.
- A. Steimer, P. Amedeo, K. Afsar, P. Fransz, O. M. Scheid, and J. Paszkowski (2000)
PLANT CELL
12, 1165-1178
| Abstract »
| Full Text »
- Positional Cloning in Arabidopsis. Why It Feels Good to Have a Genome Initiative Working for You.
- W. Lukowitz, C. S. Gillmor, and W.-R. Scheible (2000)
Plant Physiology
123, 795-806
| Abstract »
| Full Text »
- Mutagenesis of Plants Overexpressing CONSTANS Demonstrates Novel Interactions among Arabidopsis Flowering-Time Genes.
- H. Onouchi, M. I. Igeño, C. Périlleux, K. Graves, and G. Coupland (2000)
PLANT CELL
12, 885-900
| Abstract »
| Full Text »
- Comparative Genome Organization in Plants: From Sequence and Markers to Chromatin and Chromosomes.
- J. S. Heslop-Harrison (2000)
PLANT CELL
12, 617-636
| Abstract »
| Full Text »
- Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.
- X. Cao, N. M. Springer, M. G. Muszynski, R. L. Phillips, S. Kaeppler, and S. E. Jacobsen (2000)
PNAS
97, 4979-4984
| Abstract »
| Full Text »
| PDF »
- Sexual Dimorphism in White Campion: Complex Control of Carpel Number Is Revealed by Y Chromosome Deletions.
- A. Lardon, S. Georgiev, A. Aghmir, G. Le Merrer, and I. Negrutiu (1999)
Genetics
151, 1173-1185
| Abstract »
| Full Text »
- Meiotically and Mitotically Stable Inheritance of DNA Hypomethylation Induced by ddm1 Mutation of Arabidopsis thaliana.
- T. Kakutani, K. Munakata, E. J. Richards, and H. Hirochika (1999)
Genetics
151, 831-838
| Abstract »
| Full Text »
- Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems.
- S. Jacobsen, M. Running, and E. Meyerowitz (1999)
Development
126, 5231-5243
| Abstract »
| PDF »
- The Transition to Flowering.
- Y. Y. Levy and C. Dean (1998)
PLANT CELL
10, 1973-1990
| Full Text »
- Gene Silencing and Homology-Dependent Gene Silencing in Arabidopsis: Genetic Modifiers and DNA Methylation.
- I. J. Furner, M. A. Sheikh, and C. E. Collett (1998)
Genetics
149, 651-662
| Abstract »
| Full Text »
| PDF »
- The DNA methylation locus DDM1 is required for maintenance of gene silencing in Arabidopsis.
- J. A. Jeddeloh, J. Bender, and E. J. Richards (1998)
Genes & Dev.
12, 1714-1725
| Abstract »
| Full Text »
- DNA methylation and the promotion of flowering by vernalization.
- E. J. Finnegan, R. K. Genger, K. Kovac, W. J. Peacock, and E. S. Dennis (1998)
PNAS
95, 5824-5829
| Abstract »
| Full Text »
| PDF »
- A DNA Methyltransferase Homolog With a Chromodomain Exists in Multiple Polymorphic Forms in Arabidopsis.
- S. Henikoff and L. Comai (1998)
Genetics
149, 307-318
| Abstract »
| Full Text »
| PDF »
- The Nature of the Arabidopsis fon1 Mutations.
- H. Huang and H. Ma (1998)
PLANT CELL
10, 3-4
| Full Text »
- Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation.
- A. M. Lindroth, X. Cao, J. P. Jackson, D. Zilberman, C. M. McCallum, S. Henikoff, and S. E. Jacobsen (2001)
Science
292, 2077-2080
| Abstract »
| Full Text »
| PDF »
- Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development.
- L. Tian and Z. J. Chen (2001)
PNAS
98, 200-205
| Abstract »
| Full Text »
| PDF »
- From the Cover: Suppressors of transcriptional transgenic silencing in Chlamydomonas are sensitive to DNA-damaging agents and reactivate transposable elements.
- B.-r. Jeong, D. Wu-Scharf, C. Zhang, and H. Cerutti (2002)
PNAS
99, 1076-1081
| Abstract »
| Full Text »
| PDF »
|
|