Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 2 May 1997:
Vol. 276. no. 5313, pp. 734 - 740
DOI: 10.1126/science.276.5313.734

Articles

A Molecular View of Microbial Diversity and the Biosphere

Norman R. Pace

Over three decades of molecular-phylogenetic studies, researchers have compiled an increasingly robust map of evolutionary diversification showing that the main diversity of life is microbial, distributed among three primary relatedness groups or domains: Archaea, Bacteria, and Eucarya. The general properties of representatives of the three domains indicate that the earliest life was based on inorganic nutrition and that photosynthesis and use of organic compounds for carbon and energy metabolism came comparatively later. The application of molecular-phylogenetic methods to study natural microbial ecosystems without the traditional requirement for cultivation has resulted in the discovery of many unexpected evolutionary lineages; members of some of these lineages are only distantly related to known organisms but are sufficiently abundant that they are likely to have impact on the chemistry of the biosphere.

The author is in the Departments of Plant and Microbial Biology and Molecular and Cell Biology, University of California, Berkeley, CA 94720-3102, USA. E-mail: nrpace{at}nature.berkeley.edu


Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Antimicrobial chemicals in hoopoe preen secretions are produced by symbiotic bacteria.
M. Martin-Vivaldi, A. Pena, J. M. Peralta-Sanchez, L. Sanchez, S. Ananou, M. Ruiz-Rodriguez, and J. J. Soler (2010)
Proc R Soc B 277, 123-130
   Abstract »    Full Text »    PDF »
Benthic Bacterial Diversity in Submerged Sinkhole Ecosystems.
S. C. Nold, J. B. Pangborn, H. A. Zajack, S. T. Kendall, R. R. Rediske, and B. A. Biddanda (2010)
Appl. Envir. Microbiol. 76, 347-351
   Abstract »    Full Text »    PDF »
Ecology of the rare microbial biosphere of the Arctic Ocean.
P. E. Galand, E. O. Casamayor, D. L. Kirchman, and C. Lovejoy (2009)
PNAS 106, 22427-22432
   Abstract »    Full Text »    PDF »
Mapping the Tree of Life: Progress and Prospects.
N. R. Pace (2009)
Microbiol. Mol. Biol. Rev. 73, 565-576
   Abstract »    Full Text »    PDF »
An ABC Transporter Mutation Alters Root Exudation of Phytochemicals That Provoke an Overhaul of Natural Soil Microbiota.
D. V. Badri, N. Quintana, E. G. El Kassis, H. K. Kim, Y. H. Choi, A. Sugiyama, R. Verpoorte, E. Martinoia, D. K. Manter, and J. M. Vivanco (2009)
Plant Physiology 151, 2006-2017
   Abstract »    Full Text »    PDF »
Opportunistic pathogens enriched in showerhead biofilms.
L. M. Feazel, L. K. Baumgartner, K. L. Peterson, D. N. Frank, J. K. Harris, and N. R. Pace (2009)
PNAS 106, 16393-16399
   Abstract »    Full Text »    PDF »
Vaginal Microbiota of Women with Frequent Vulvovaginal Candidiasis.
X. Zhou, R. Westman, R. Hickey, M. A. Hansmann, C. Kennedy, T. W. Osborn, and L. J. Forney (2009)
Infect. Immun. 77, 4130-4135
   Abstract »    Full Text »    PDF »
Potentially Pathogenic Bacteria in Shower Water and Air of a Stem Cell Transplant Unit.
S. D. Perkins, J. Mayfield, V. Fraser, and L. T. Angenent (2009)
Appl. Envir. Microbiol. 75, 5363-5372
   Abstract »    Full Text »    PDF »
Characterization of Airborne Microbial Communities at a High-Elevation Site and Their Potential To Act as Atmospheric Ice Nuclei.
R. M. Bowers, C. L. Lauber, C. Wiedinmyer, M. Hamady, A. G. Hallar, R. Fall, R. Knight, and N. Fierer (2009)
Appl. Envir. Microbiol. 75, 5121-5130
   Abstract »    Full Text »    PDF »
Bacterial Associates of Arboreal Ants and Their Putative Functions in an Obligate Ant-Plant Mutualism.
S. Eilmus and M. Heil (2009)
Appl. Envir. Microbiol. 75, 4324-4332
   Abstract »    Full Text »    PDF »
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges.
M. Hamady and R. Knight (2009)
Genome Res. 19, 1141-1152
   Abstract »    Full Text »    PDF »
Assessment of the Diversity, Abundance, and Ecological Distribution of Members of Candidate Division SR1 Reveals a High Level of Phylogenetic Diversity but Limited Morphotypic Diversity.
J. P. Davis, N. H. Youssef, and M. S. Elshahed (2009)
Appl. Envir. Microbiol. 75, 4139-4148
   Abstract »    Full Text »    PDF »
Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation.
D. A. Antonopoulos, S. M. Huse, H. G. Morrison, T. M. Schmidt, M. L. Sogin, and V. B. Young (2009)
Infect. Immun. 77, 2367-2375
   Abstract »    Full Text »    PDF »
Priming Soilless Growing Medium with Disaccharides Stimulated Microbial Biofilm Formation, and Increased Particle Aggregation and Moisture Retention during Muskmelon Transplant Production.
G. E. Welbaum, Z.-X. Shen, J. I. Watkinson, C.-L. Wang, and J. Nowak (2009)
J. Amer. Soc. Hort. Sci. 134, 387-395
   Abstract »    Full Text »    PDF »
Metagenomic Pyrosequencing and Microbial Identification.
J. F. Petrosino, S. Highlander, R. A. Luna, R. A. Gibbs, and J. Versalovic (2009)
Clin. Chem. 55, 856-866
   Abstract »    Full Text »    PDF »
Problems with "Procaryote".
N. R. Pace (2009)
J. Bacteriol. 191, 2008-2010
   Full Text »    PDF »
How the Microbial World Saved Evolution from the Scylla of Molecular Biology and the Charybdis of the Modern Synthesis.
C. R. Woese and N. Goldenfeld (2009)
Microbiol. Mol. Biol. Rev. 73, 14-21
   Abstract »    Full Text »    PDF »
Darwinian evolution in the light of genomics.
E. V. Koonin (2009)
Nucleic Acids Res. 37, 1011-1034
   Abstract »    Full Text »    PDF »
Isotopic Evidence for an Aerobic Nitrogen Cycle in the Latest Archean.
J. Garvin, R. Buick, A. D. Anbar, G. L. Arnold, and A. J. Kaufman (2009)
Science 323, 1045-1048
   Abstract »    Full Text »    PDF »
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.
J. M. Brulc, D. A. Antonopoulos, M. E. Berg Miller, M. K. Wilson, A. C. Yannarell, E. A. Dinsdale, R. E. Edwards, E. D. Frank, J. B. Emerson, P. Wacklin, et al. (2009)
PNAS 106, 1948-1953
   Abstract »    Full Text »    PDF »
The influence of sex, handedness, and washing on the diversity of hand surface bacteria.
N. Fierer, M. Hamady, C. L. Lauber, and R. Knight (2008)
PNAS 105, 17994-17999
   Abstract »    Full Text »    PDF »
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.
Z. Liu, T. Z. DeSantis, G. L. Andersen, and R. Knight (2008)
Nucleic Acids Res. 36, e120
   Abstract »    Full Text »    PDF »
Evolutionary ecology during the rise of dioxygen in the Earth's atmosphere.
N. H Sleep and D. K Bird (2008)
Phil Trans R Soc B 363, 2651-2664
   Abstract »    Full Text »    PDF »
Electrons, life and the evolution of Earth's oxygen cycle.
P. G Falkowski and L. V Godfrey (2008)
Phil Trans R Soc B 363, 2705-2716
   Abstract »    Full Text »    PDF »
When did oxygenic photosynthesis evolve?.
R. Buick (2008)
Phil Trans R Soc B 363, 2731-2743
   Abstract »    Full Text »    PDF »
Use of Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy To Identify Microbial Metabolic Products on Carbonate Mineral Surfaces.
H. A. Bullen, S. A. Oehrle, A. F. Bennett, N. M. Taylor, and H. A. Barton (2008)
Appl. Envir. Microbiol. 74, 4553-4559
   Abstract »    Full Text »    PDF »
A diversity profile of the human skin microbiota.
E. A. Grice, H. H. Kong, G. Renaud, A. C. Young, NISC Comparative Sequencing Program, G. G. Bouffard, R. W. Blakesley, T. G. Wolfsberg, M. L. Turner, and J. A. Segre (2008)
Genome Res. 18, 1043-1050
   Abstract »    Full Text »    PDF »
Quantification of the Detrimental Effect of a Single Primer-Template Mismatch by Real-Time PCR Using the 16S rRNA Gene as an Example.
D. Bru, F. Martin-Laurent, and L. Philippot (2008)
Appl. Envir. Microbiol. 74, 1660-1663
   Abstract »    Full Text »    PDF »
Association of Mycoplasma ovipneumoniae Infection with Population-Limiting Respiratory Disease in Free-Ranging Rocky Mountain Bighorn Sheep (Ovis canadensis canadensis).
T. E. Besser, E. F. Cassirer, K. A. Potter, J. VanderSchalie, A. Fischer, D. P. Knowles, D. R. Herndon, F. R. Rurangirwa, G. C. Weiser, and S. Srikumaran (2008)
J. Clin. Microbiol. 46, 423-430
   Abstract »    Full Text »    PDF »
A bacterial metapopulation adapts locally to phage predation despite global dispersal.
V. Kunin, S. He, F. Warnecke, S. B. Peterson, H. Garcia Martin, M. Haynes, N. Ivanova, L. L. Blackall, M. Breitbart, F. Rohwer, et al. (2008)
Genome Res. 18, 293-297
   Abstract »    Full Text »    PDF »
Insight into Disulfide Bond Catalysis in Chlamydia from the Structure and Function of DsbH, a Novel Oxidoreductase.
T.-T. Mac, A. von Hacht, K.-C. Hung, R. J. Dutton, D. Boyd, J. C. A. Bardwell, and T. S. Ulmer (2008)
J. Biol. Chem. 283, 824-832
   Abstract »    Full Text »    PDF »
Short-Term Temporal Variability in Airborne Bacterial and Fungal Populations.
N. Fierer, Z. Liu, M. Rodriguez-Hernandez, R. Knight, M. Henn, and M. T. Hernandez (2008)
Appl. Envir. Microbiol. 74, 200-207
   Abstract »    Full Text »    PDF »
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
E. Pruesse, C. Quast, K. Knittel, B. M. Fuchs, W. Ludwig, J. Peplies, and F. O. Glockner (2007)
Nucleic Acids Res. 35, 7188-7196
   Abstract »    Full Text »    PDF »
Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis.
J. K. Harris, M. A. De Groote, S. D. Sagel, E. T. Zemanick, R. Kapsner, C. Penvari, H. Kaess, R. R. Deterding, F. J. Accurso, and N. R. Pace (2007)
PNAS 104, 20529-20533
   Abstract »    Full Text »    PDF »
Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil.
N. Fierer, M. Breitbart, J. Nulton, P. Salamon, C. Lozupone, R. Jones, M. Robeson, R. A. Edwards, B. Felts, S. Rayhawk, et al. (2007)
Appl. Envir. Microbiol. 73, 7059-7066
   Abstract »    Full Text »    PDF »
Short pyrosequencing reads suffice for accurate microbial community analysis.
Z. Liu, C. Lozupone, M. Hamady, F. D. Bushman, and R. Knight (2007)
Nucleic Acids Res. 35, e120
   Abstract »    Full Text »    PDF »
Serial Analysis of rRNA Genes and the Unexpected Dominance of Rare Members of Microbial Communities.
M. N. Ashby, J. Rine, E. F. Mongodin, K. E. Nelson, and D. Dimster-Denk (2007)
Appl. Envir. Microbiol. 73, 4532-4542
   Abstract »    Full Text »    PDF »
Global patterns in bacterial diversity.
C. A. Lozupone and R. Knight (2007)
PNAS 104, 11436-11440
   Abstract »    Full Text »    PDF »
Molecular Characterization and Subcellular Localization of Macrophage Infectivity Potentiator, a Chlamydia trachomatis Lipoprotein.
L. Neff, S. Daher, P. Muzzin, U. Spenato, F. Gulacar, C. Gabay, and S. Bas (2007)
J. Bacteriol. 189, 4739-4748
   Abstract »    Full Text »    PDF »
Phylogenetic Composition of Rocky Mountain Endolithic Microbial Ecosystems.
J. J. Walker and N. R. Pace (2007)
Appl. Envir. Microbiol. 73, 3497-3504
   Abstract »    Full Text »    PDF »
Eurythermalism and the temperature dependence of enzyme activity.
C. K. Lee, R. M. Daniel, C. Shepherd, D. Saul, S. C. Cary, M. J. Danson, R. Eisenthal, and M. E. Peterson (2007)
FASEB J 21, 1934-1941
   Abstract »    Full Text »    PDF »
Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities.
M. Podar, C. B. Abulencia, M. Walcher, D. Hutchison, K. Zengler, J. A. Garcia, T. Holland, D. Cotton, L. Hauser, and M. Keller (2007)
Appl. Envir. Microbiol. 73, 3205-3214
   Abstract »    Full Text »    PDF »
Evolutionary rates vary among rRNA structural elements.
S. Smit, J. Widmann, and R. Knight (2007)
Nucleic Acids Res. 35, 3339-3354
   Abstract »    Full Text »    PDF »
Enigmatic dual symbiosis in the excretory organ of Nautilus macromphalus (Cephalopoda: Nautiloidea).
M. Pernice, S. Wetzel, O. Gros, R. Boucher-Rodoni, and N. Dubilier (2007)
Proc R Soc B 274, 1143-1152
   Abstract »    Full Text »    PDF »
Effects of Abiotic Factors on the Phylogenetic Diversity of Bacterial Communities in Acidic Thermal Springs.
J. Mathur, R. W. Bizzoco, D. G. Ellis, D. A. Lipson, A. W. Poole, R. Levine, and S. T. Kelley (2007)
Appl. Envir. Microbiol. 73, 2612-2623
   Abstract »    Full Text »    PDF »
Assessing Microbial Community Diversity Using Amplicon Length Heterogeneity Polymerase Chain Reaction.
D. K. Mills, J. A. Entry, P. M. Gillevet, and K. Mathee (2007)
Soil Sci. Soc. Am. J. 71, 572-578
   Abstract »    Full Text »    PDF »
Quantitative and Qualitative {beta} Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities.
C. A. Lozupone, M. Hamady, S. T. Kelley, and R. Knight (2007)
Appl. Envir. Microbiol. 73, 1576-1585
   Abstract »    Full Text »    PDF »
Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments.
C. von Mering, P. Hugenholtz, J. Raes, S. G. Tringe, T. Doerks, L. J. Jensen, N. Ward, and P. Bork (2007)
Science 315, 1126-1130
   Abstract »    Full Text »    PDF »
Molecular analysis of human forearm superficial skin bacterial biota.
Z. Gao, C.-h. Tseng, Z. Pei, and M. J. Blaser (2007)
PNAS 104, 2927-2932
   Abstract »    Full Text »    PDF »
Inaugural Article: Pattern pluralism and the Tree of Life hypothesis.
W. F. Doolittle and E. Bapteste (2007)
PNAS 104, 2043-2049
   Abstract »    Full Text »    PDF »
Preliminary characterization of the normal microbiota of the human vulva using cultivation-independent methods.
C. J. Brown, M. Wong, C. C. Davis, A. Kanti, X. Zhou, and L. J. Forney (2007)
J. Med. Microbiol. 56, 271-276
   Abstract »    Full Text »    PDF »
Origin of the Bacterial SET Domain Genes: Vertical or Horizontal?.
R. Alvarez-Venegas, M. Sadder, A. Tikhonov, and Z. Avramova (2007)
Mol. Biol. Evol. 24, 482-497
   Abstract »    Full Text »    PDF »
Communities of Archaea and Bacteria in a Subsurface Radioactive Thermal Spring in the Austrian Central Alps, and Evidence of Ammonia-Oxidizing Crenarchaeota.
G. W. Weidler, M. Dornmayr-Pfaffenhuemer, F. W. Gerbl, W. Heinen, and H. Stan-Lotter (2007)
Appl. Envir. Microbiol. 73, 259-270
   Abstract »    Full Text »    PDF »
Application of SmartGene IDNS Software to Partial 16S rRNA Gene Sequences for a Diverse Group of Bacteria in a Clinical Laboratory.
K. E. Simmon, A. C. Croft, and C. A. Petti (2006)
J. Clin. Microbiol. 44, 4400-4406
   Abstract »    Full Text »    PDF »
Towards a conceptual and operational union of bacterial systematics, ecology, and evolution.
F. M Cohan (2006)
Phil Trans R Soc B 361, 1985-1996
   Abstract »    Full Text »    PDF »
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum.
S. J. Hallam, K. T. Konstantinidis, N. Putnam, C. Schleper, Y.-i. Watanabe, J. Sugahara, C. Preston, J. de la Torre, P. M. Richardson, and E. F. DeLong (2006)
PNAS 103, 18296-18301
   Abstract »    Full Text »    PDF »
Functional Genomic and Metabolic Studies of the Adaptations of a Prominent Adult Human Gut Symbiont, Bacteroides thetaiotaomicron, to the Suckling Period.
M. K. Bjursell, E. C. Martens, and J. I. Gordon (2006)
J. Biol. Chem. 281, 36269-36279
   Abstract »    Full Text »    PDF »
Culture Isolation and Culture-Independent Clone Libraries Reveal New Marine Synechococcus Ecotypes with Distinctive Light and N Physiologies.
N. A. Ahlgren and G. Rocap (2006)
Appl. Envir. Microbiol. 72, 7193-7204
   Abstract »    Full Text »    PDF »
Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota..
A. B. Dalby, D. N. Frank, A. L. St. Amand, A. M. Bendele, and N. R. Pace (2006)
Appl. Envir. Microbiol. 72, 6707-6715
   Abstract »    Full Text »    PDF »
Whole-Genome Reciprocal BLAST Analysis Reveals that Planctomycetes Do Not Share an Unusually Large Number of Genes with Eukarya and Archaea..
C. A. Fuchsman and G. Rocap (2006)
Appl. Envir. Microbiol. 72, 6841-6844
   Abstract »    Full Text »    PDF »
Estimating diversity of Indo-Pacific coral reef stomatopods through DNA barcoding of stomatopod larvae.
P. Barber and S. L Boyce (2006)
Proc R Soc B 273, 2053-2061
   Abstract »    Full Text »    PDF »
Microbial diversity in the deep sea and the underexplored "rare biosphere".
M. L. Sogin, H. G. Morrison, J. A. Huber, D. M. Welch, S. M. Huse, P. R. Neal, J. M. Arrieta, and G. J. Herndl (2006)
PNAS 103, 12115-12120
   Abstract »    Full Text »    PDF »
Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions..
L. C. Paulino, C.-H. Tseng, B. E. Strober, and M. J. Blaser (2006)
J. Clin. Microbiol. 44, 2933-2941
   Abstract »    Full Text »    PDF »
Telonemia, a new protist phylum with affinity to chromist lineages.
K Shalchian-Tabrizi, W Eikrem, D Klaveness, D Vaulot, M.A Minge, F Le Gall, K Romari, J Throndsen, A Botnen, R Massana, et al. (2006)
Proc R Soc B 273, 1833-1842
   Abstract »    Full Text »    PDF »
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB..
T. Z. DeSantis, P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, and G. L. Andersen (2006)
Appl. Envir. Microbiol. 72, 5069-5072
   Abstract »    Full Text »    PDF »
NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes..
T. Z. DeSantis Jr, P. Hugenholtz, K. Keller, E. L. Brodie, N. Larsen, Y. M. Piceno, R. Phan, and G. L. Andersen (2006)
Nucleic Acids Res. 34, W394-W399
   Abstract »    Full Text »    PDF »
Microbial diversity in bighorn sheep revealed by culture-independent methods..
S. Safaee, G. C. Weiser, E. F. Cassirer, R. R. Ramey, and S. T. Kelley (2006)
J. Wildl. Dis. 42, 545-555
   Abstract »    Full Text »    PDF »
Census of prokaryotic senses..
R. B. Bourret (2006)
J. Bacteriol. 188, 4165-4168
   Full Text »    PDF »
Recognition of a complex substrate by the KsgA/Dim1 family of enzymes has been conserved throughout evolution.
H. C. O'Farrell, N. Pulicherla, P. M. Desai, and J. P. Rife (2006)
RNA 12, 725-733
   Abstract »    Full Text »    PDF »
Archaeal mysteries of the deep revealed.
E. F. DeLong (2006)
PNAS 103, 6417-6418
   Full Text »    PDF »
Carbon monoxide and hydrogen sulfide: gaseous messengers in cerebrovascular circulation.
C. W. Leffler, H. Parfenova, J. H. Jaggar, and R. Wang (2006)
J Appl Physiol 100, 1065-1076
   Abstract »    Full Text »    PDF »
Metagenomic analysis of mesopelagic Antarctic plankton reveals a novel deltaproteobacterial group.
D. Moreira, F. Rodriguez-Valera, and P. Lopez-Garcia (2006)
Microbiology 152, 505-517
   Abstract »    Full Text »    PDF »
Pathobiology of Sepsis: Are We Still Asking the Same Questions?.
R. M. Baron, M. J. Baron, and M. A. Perrella (2006)
Am. J. Respir. Cell Mol. Biol. 34, 129-134
   Full Text »    PDF »
Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior.
E. F. DeLong, C. M. Preston, T. Mincer, V. Rich, S. J. Hallam, N.-U. Frigaard, A. Martinez, M. B. Sullivan, R. Edwards, B. R. Brito, et al. (2006)
Science 311, 496-503
   Abstract »    Full Text »    PDF »
Molecular analysis of the bacterial microbiota in the human stomach.
E. M. Bik, P. B. Eckburg, S. R. Gill, K. E. Nelson, E. A. Purdom, F. Francois, G. Perez-Perez, M. J. Blaser, and D. A. Relman (2006)
PNAS 103, 732-737
   Abstract »    Full Text »    PDF »
From the Cover: The diversity and biogeography of soil bacterial communities.
N. Fierer and R. B. Jackson (2006)
PNAS 103, 626-631
   Abstract »    Full Text »    PDF »
ChxR is a transcriptional activator in Chlamydia.
I. C. Koo, D. Walthers, P. S. Hefty, L. J. Kenney, and R. S. Stephens (2006)
PNAS 103, 750-755
   Abstract »    Full Text »    PDF »
Early life signatures in sulfur and carbon isotopes from Isua, Barberton, Wabigoon (Steep Rock), and Belingwe Greenstone Belts (3.8 to 2.7 Ga).
N.V. Grassineau, P. Abell, P.W.U. Appel, D. Lowry, and E.G. Nisbet (2006)
Geological Society of America Memoirs 198, 33-52
   Abstract »    Full Text »    PDF »
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.
F. Chen, A. J. Mackey, C. J. Stoeckert Jr, and D. S. Roos (2006)
Nucleic Acids Res. 34, D363-D368
   Abstract »    Full Text »    PDF »
Characterization of a Forest Soil Metagenome Clone That Confers Indirubin and Indigo Production on Escherichia coli.
H. K. Lim, E. J. Chung, J.-C. Kim, G. J. Choi, K. S. Jang, Y. R. Chung, K. Y. Cho, and S.-W. Lee (2005)
Appl. Envir. Microbiol. 71, 7768-7777
   Abstract »    Full Text »    PDF »
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities.
C. Lozupone and R. Knight (2005)
Appl. Envir. Microbiol. 71, 8228-8235
   Abstract »    Full Text »    PDF »
Effects of Elevated Atmospheric CO2 on Soil Microbial Biomass, Activity, and Diversity in a Chaparral Ecosystem.
D. A. Lipson, R. F. Wilson, and W. C. Oechel (2005)
Appl. Envir. Microbiol. 71, 8573-8580
   Abstract »    Full Text »    PDF »
Molecular identification of bacteria associated with bacterial vaginosis..
D. N. Fredricks, T. L. Fiedler, and J. M. Marrazzo (2005)
N. Engl. J. Med. 353, 1899-1911
   Abstract »    Full Text »    PDF »
Metagenomic Analysis of the Microbial Community at Zodletone Spring (Oklahoma): Insights into the Genome of a Member of the Novel Candidate Division OD1.
M. S. Elshahed, F. Z. Najar, M. Aycock, C. Qu, B. A. Roe, and L. R. Krumholz (2005)
Appl. Envir. Microbiol. 71, 7598-7602
   Abstract »    Full Text »    PDF »
Can rDNA analyses of diverse fungal communities in soil and roots detect effects of environmental manipulations--a case study from tallgrass prairie..
A. Jumpponen and L. C. Johnson (2005)
Mycologia 97, 1177-1194
   Abstract »    Full Text »    PDF »
Colonization of the Cecal Mucosa by Helicobacter hepaticus Impacts the Diversity of the Indigenous Microbiota.
C. J. Kuehl, H. D. Wood, T. L. Marsh, T. M. Schmidt, and V. B. Young (2005)
Infect. Immun. 73, 6952-6961
   Abstract »    Full Text »    PDF »
Colloquium Perspective: Statistical signals in bioinformatics.
S. Karlin (2005)
PNAS 102, 13355-13362
   Abstract »    Full Text »    PDF »
The Geomicrobiology of Ore Deposits.
G. Southam and J. A. Saunders (2005)
Economic Geology 100, 1067-1084
   Abstract »    Full Text »    PDF »
Composition and Structure of Microbial Communities from Stromatolites of Hamelin Pool in Shark Bay, Western Australia.
D. Papineau, J. J. Walker, S. J. Mojzsis, and N. R. Pace (2005)
Appl. Envir. Microbiol. 71, 4822-4832
   Abstract »    Full Text »    PDF »
Classification of oligonucleotide fingerprints: application for microbial community and gene expression analyses.
K. Jampachaisri, L. Valinsky, J. Borneman, and S. J. Press (2005)
Bioinformatics 21, 3122-3130
   Abstract »    Full Text »    PDF »
Microbial co-operation in the rhizosphere.
J.-M. Barea, M. J. Pozo, R. Azcon, and C. Azcon-Aguilar (2005)
J. Exp. Bot. 56, 1761-1778
   Abstract »    Full Text »    PDF »
Diversity of the Human Intestinal Microbial Flora.
P. B. Eckburg, E. M. Bik, C. N. Bernstein, E. Purdom, L. Dethlefsen, M. Sargent, S. R. Gill, K. E. Nelson, and D. A. Relman (2005)
Science 308, 1635-1638
   Abstract »    Full Text »    PDF »
Microbial K+ Channels.
S. H. Loukin, M. M.-C. Kuo, X.-L. Zhou, W. J. Haynes, C. Kung, and Y. Saimi (2005)
J. Gen. Physiol. 125, 521-527
   Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)