Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 5 January 1996:
Vol. 271. no. 5245, pp. 72 - 77
DOI: 10.1126/science.271.5245.72

Reports

Direct Observation of Protein Solvation and Discrete Disorder with Experimental Crystallographic Phases

F. Temple Burling,  William I. Weis (1),  Kevin M. Flaherty,  Axel T. Brünger (1)

A complete and accurate set of experimental crystallographic phases to a resolution of 1.8 angstroms was obtained for a 230-residue dimeric fragment of rat mannose-binding protein A with the use of multiwavelength anomalous dispersion (MAD) phasing. An accurate image of the crystal structure could thus be obtained without resort to phases calculated from a model. Partially reduced disulfide bonds, local disorder, and differences in the mobility of chemically equivalent molecules are apparent in the experimental electron density map. A solvation layer is visible that includes well-ordered sites of hydration around polar and charged protein atoms, as well as diffuse, partially disordered solvent shells around exposed hydrophobic groups. Because the experimental phases and the resulting electron density map are free from the influence of a model, they provide a stringent test of theoretical models of macromolecular solvation, motion, and conformational heterogeneity.


F. T. Burling and A. T. Brünger, Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.
W. I. Weis and K. M. Flaherty, Department of Structural Biology, Stanford University, Stanford, CA 94305, USA.
(1) To whom correspondence should be addressed.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Use of experimental crystallographic phases to examine the hydration of polar and nonpolar cavities in T4 lysozyme.
L. Liu, M. L. Quillin, and B. W. Matthews (2008)
PNAS 105, 14406-14411
   Abstract »    Full Text »    PDF »
An extended dynamical hydration shell around proteins.
S. Ebbinghaus, S. J. Kim, M. Heyden, X. Yu, U. Heugen, M. Gruebele, D. M. Leitner, and M. Havenith (2007)
PNAS 104, 20749-20752
   Abstract »    Full Text »    PDF »
From the Cover: Mapping hydration dynamics around a protein surface.
L. Zhang, L. Wang, Y.-T. Kao, W. Qiu, Y. Yang, O. Okobiah, and D. Zhong (2007)
PNAS 104, 18461-18466
   Abstract »    Full Text »    PDF »
Determination of solvent content in cavities in IL-1beta using experimentally phased electron density.
M. L. Quillin, P. T. Wingfield, and B. W. Matthews (2006)
PNAS 103, 19749-19753
   Abstract »    Full Text »    PDF »
Ligand-Receptor Complexes: Origin and Development of the Concept.
I. M. Klotz (2004)
J. Biol. Chem. 279, 1-12
   Full Text »    PDF »
Is the first hydration shell of lysozyme of higher density than bulk water?.
F. Merzel and J. C. Smith (2002)
PNAS 99, 5378-5383
   Abstract »    Full Text »    PDF »
From the Cover: Specific chemical and structural damage to proteins produced by synchrotron radiation.
M. Weik, R. B. G. Ravelli, G. Kryger, S. McSweeney, M. L. Raves, M. Harel, P. Gros, I. Silman, J. Kroon, and J. L. Sussman (2000)
PNAS 97, 623-628
   Abstract »    Full Text »    PDF »
Identification of the Calcium Binding Site and a Novel Ytterbium Site in Blood Coagulation Factor XIII by X-ray Crystallography.
B. A. Fox, V. C. Yee, L. C. Pedersen, I. Le Trong, P. D. Bishop, R. E. Stenkamp, and D. C. Teller (1999)
J. Biol. Chem. 274, 4917-4923
   Abstract »    Full Text »    PDF »
Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography.
B. Yu, M. Blaber, A. M. Gronenborn, G. M. Clore, and D. L. D. Caspar (1999)
PNAS 96, 103-108
   Abstract »    Full Text »    PDF »
Protein hydration in solution: Experimental observation by x-ray and neutron scattering.
D. I. Svergun, S. Richard, M. H. J. Koch, Z. Sayers, S. Kuprin, and G. Zaccai (1998)
PNAS 95, 2267-2272
   Abstract »    Full Text »    PDF »
Crystal Structure and Biophysical Properties of a Complex between the N-terminal SNARE Region of SNAP25 and Syntaxin 1a.
K. M. S. Misura, L. C. Gonzalez Jr., A. P. May, R. H. Scheller, and W. I. Weis (2001)
J. Biol. Chem. 276, 41301-41309
   Abstract »    Full Text »    PDF »
Biological water at the protein surface: Dynamical solvation probed directly with femtosecond resolution.
S. K. Pal, J. Peon, and A. H. Zewail (2002)
PNAS 99, 1763-1768
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)