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Science 24 December 1993: Vol. 262. no. 5142, pp. 1982 - 1988 DOI: 10.1126/science.8266093
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Articles
Science, Vol 262, Issue 5142, 1982-1988
Copyright © 1993 by American Association for the Advancement of Science
Mutations in U6 snRNA that alter splice site specificity: implications for the active site
CF Lesser
and
C Guthrie
Medical Scientist Training Program, University of California, San Francisco 94143.
What determines the precise sites of cleavage in the two transesterification reactions of messenger RNA (mRNA) splicing is a major unsolved question. Mutation of the invariant G (guanosine) at position 5 of 5' splice sites in Saccharomyces cerevisiae introns activates cleavage at nearby aberrant sites. A genetic approach was used to test the hypothesis that a base-pairing interaction between the 5' splice site and the invariant ACAGAG sequence of U6 is a determinant of 5' splice site choice. Mutations in U6 or the intron (or both) that were predicted to stabilize the interaction suppressed aberrant cleavage and increased normal cleavage. In addition, a mutation in the ACAGAG sequence suppressed mutations of the 3' splice site dinucleotide. These data can fit a model for the spliceosomal active site comprised of a set of RNA-RNA interactions between the intron, U2 and U6.
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| Abstract »
| Full Text »
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| Abstract »
| PDF »
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- W Y Tarn and J A Steitz (1994)
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| Abstract »
| PDF »
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| Abstract »
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- B B Konforti and M M Konarska (1994)
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8, 1962-1973
| Abstract »
| PDF »
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- P Champion-Arnaud and R Reed (1994)
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8, 1974-1983
| Abstract »
| PDF »
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- Y Lu, X Y Qian, and R M Krug (1994)
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8, 1817-1828
| Abstract »
| PDF »
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- L Hong and R B Hallick (1994)
Genes & Dev.
8, 1589-1599
| Abstract »
| PDF »
- A tertiary interaction in the Tetrahymena intron contributes to selection of the 5' splice site..
- W D Downs and T R Cech (1994)
Genes & Dev.
8, 1198-1211
| Abstract »
| PDF »
- Randomization-selection analysis of snRNAs in vivo: evidence for a tertiary interaction in the spliceosome..
- H D Madhani and C Guthrie (1994)
Genes & Dev.
8, 1071-1086
| Abstract »
| PDF »
- Guides to the heart of the spliceosome.
- J. Wise (1993)
Science
262, 1978-1979
| PDF »
- The U5 and U6 small nuclear RNAs as active site components of the spliceosome.
- E. Sontheimer and J. Steitz (1993)
Science
262, 1989-1996
| Abstract »
| PDF »
- Involvement of U6 snRNA in 5' splice site selection.
- S Kandels-Lewis and B Seraphin (1993)
Science
262, 2035-2039
| Abstract »
| PDF »
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- Y.-x. Xu, L. Liu, and S. Michaeli (2000)
J. Biol. Chem.
275, 27883-27892
| Abstract »
| Full Text »
| PDF »
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