Related Content
Search Google Scholar for:
|
|
Science 1 October 1993: Vol. 262. no. 5130, pp. 110 - 114 DOI: 10.1126/science.8211116
|
|
Articles
Science, Vol 262, Issue 5130, 110-114
Copyright © 1993 by American Association for the Advancement of Science
Ordered restriction maps of Saccharomyces cerevisiae chromosomes constructed by optical mapping
DC Schwartz,
X Li,
LI Hernandez,
SP Ramnarain,
EJ Huff,
and
YK Wang
Department of Chemistry, New York University, NY 10003.
A light microscope-based technique for rapidly constructing ordered physical maps of chromosomes has been developed. Restriction enzyme digestion of elongated individual DNA molecules (about 0.2 to 1.0 megabases in size) was imaged by fluorescence microscopy after fixation in agarose gel. The size of the resulting individual restriction fragments was determined by relative fluorescence intensity and apparent molecular contour length. Ordered restriction maps were then created from genomic DNA without reliance on cloned or amplified sequences for hybridization or analytical gel electrophoresis. Initial application of optical mapping is described for Saccharomyces cerevisiae chromosomes.
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Rapid DNA mapping by fluorescent single molecule detection.
- M. Xiao, A. Phong, C. Ha, T.-F. Chan, D. Cai, L. Leung, E. Wan, A. L. Kistler, J. L. DeRisi, P. R. Selvin, et al. (2007)
Nucleic Acids Res.
35, e16
| Abstract »
| Full Text »
| PDF »
- An algorithm for assembly of ordered restriction maps from single DNA molecules.
- A. Valouev, D. C. Schwartz, S. Zhou, and M. S. Waterman (2006)
PNAS
103, 15770-15775
| Abstract »
| Full Text »
| PDF »
- A simple DNA stretching method for fluorescence imaging of single DNA molecules.
- T.-F. Chan, C. Ha, A. Phong, D. Cai, E. Wan, L. Leung, P.-Y. Kwok, and M. Xiao (2006)
Nucleic Acids Res.
34, e113
| Abstract »
| Full Text »
| PDF »
- Restriction mapping in nanofluidic devices.
- R. Riehn, M. Lu, Y.-M. Wang, S. F. Lim, E. C. Cox, and R. H. Austin (2005)
PNAS
102, 10012-10016
| Abstract »
| Full Text »
| PDF »
- Cyanine Dyes as Intercalating Agents: Kinetic and Thermodynamic Studies on the DNA/Cyan40 and DNA/CCyan2 Systems.
- T. Biver, A. De Biasi, F. Secco, M. Venturini, and S. Yarmoluk (2005)
Biophys. J.
89, 374-383
| Abstract »
| Full Text »
| PDF »
- Sizing of single fluorescently stained DNA fragments by scanning microscopy.
- S. Laib, M. Rankl, T. Ruckstuhl, and S. Seeger (2003)
Nucleic Acids Res.
31, e138
| Abstract »
| Full Text »
| PDF »
- Probing Protein-DNA Interactions by Unzipping a Single DNA Double Helix.
- S. J. Koch, A. Shundrovsky, B. C. Jantzen, and M. D. Wang (2002)
Biophys. J.
83, 1098-1105
| Abstract »
| Full Text »
| PDF »
- General method of rapid Smith/Birnstiel mapping adds for gap closure in shotgun microbial genome sequencing projects: application to Pseudomonas putida KT2440.
- C. Weinel, B. Tummler, H. Hilbert, K. E. Nelson, and C. Kiewitz (2001)
Nucleic Acids Res.
29, e110
| Abstract »
| Full Text »
| PDF »
- Whole-Genome Shotgun Optical Mapping of Deinococcus radiodurans.
- J. Lin, R. Qi, C. Aston, J. Jing, T. S. Anantharaman, B. Mishra, O. White, M. J. Daly, K. W. Minton, J. C. Venter, et al. (1999)
Science
285, 1558-1562
| Abstract »
| Full Text »
- Optical Mapping of Plasmodium falciparum Chromosome 2.
- J. Jing, Z. Lai, C. Aston, J. Lin, D. J. Carucci, M. J. Gardner, B. Mishra, T. S. Anantharaman, H. Tettelin, L. M. Cummings, et al. (1999)
Genome Res.
9, 175-181
| Abstract »
| Full Text »
- Automated high resolution optical mapping using arrayed, fluid-fixed DNA molecules.
- J. Jing, J. Reed, J. Huang, X. Hu, V. Clarke, J. Edington, D. Housman, T. S. Anantharaman, E. J. Huff, B. Mishra, et al. (1998)
PNAS
95, 8046-8051
| Abstract »
| Full Text »
| PDF »
- High-resolution restriction maps of bacterial artificial chromosomes constructed by optical mapping.
- W. Cai, J. Jing, B. Irvin, L. Ohler, E. Rose, H. Shizuya, U.-J. Kim, M. Simon, T. Anantharaman, B. Mishra, et al. (1998)
PNAS
95, 3390-3395
| Abstract »
| Full Text »
| PDF »
- Optical mapping: a novel, single-molecule approach to genomic analysis..
- A Samad, E F Huff, W Cai, and D C Schwartz (1995)
Genome Res.
5, 1-4
| PDF »
- Alignment and sensitive detection of DNA by a moving interface.
- A Bensimon, A Simon, A Chiffaudel, V Croquette, F Heslot, and D Bensimon (1994)
Science
265, 2096-2098
| Abstract »
| PDF »
|
|