Related Content
Search Google Scholar for:
|
|
Science 16 October 1987: Vol. 238. no. 4825, pp. 336 - 341 DOI: 10.1126/science.2443975
|
|
Articles
Science, Vol 238, Issue 4825, 336-341
Copyright © 1987 by American Association for the Advancement of Science
A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides
JM Prober,
GL Trainor,
RJ Dam,
FW Hobbs,
CW Robertson,
RJ Zagursky,
AJ Cocuzza,
MA Jensen,
and
K Baumeister
Engineering Physics Laboratory, E.I. du Pont de Nemours & Company (Inc.), Wilmington, DE 19898.
A DNA sequencing system based on the use of a novel set of four chain-terminating dideoxynucleotides, each carrying a different chemically tuned succinylfluorescein dye distinguished by its fluorescent emission is described. Avian myeloblastosis virus reverse transcriptase is used in a modified dideoxy DNA sequencing protocol to produce a complete set of fluorescence-tagged fragments in one reaction mixture. These DNA fragments are resolved by polyacrylamide gel electrophoresis in one sequencing lane and are identified by a fluorescence detection system specifically matched to the emission characteristics of this dye set. A scanning system allows multiple samples to be run simultaneously and computer-based automatic base sequence identifications to be made. The sequence analysis of M13 phage DNA made with this system is described.
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
- Analytical Ancestry: "Firsts" in Fluorescent Labeling of Nucleosides, Nucleotides, and Nucleic Acids.
- L. J. Kricka and P. Fortina (2009)
Clin. Chem.
55, 670-683
| Abstract »
| Full Text »
| PDF »
- Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides.
- J. Guo, N. Xu, Z. Li, S. Zhang, J. Wu, D. H. Kim, M. Sano Marma, Q. Meng, H. Cao, X. Li, et al. (2008)
PNAS
105, 9145-9150
| Abstract »
| Full Text »
| PDF »
- Advanced sequencing technologies and their wider impact in microbiology.
- N. Hall (2007)
J. Exp. Biol.
210, 1518-1525
| Abstract »
| Full Text »
| PDF »
- Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators.
- J. Ju, D. H. Kim, L. Bi, Q. Meng, X. Bai, Z. Li, X. Li, M. S. Marma, S. Shi, J. Wu, et al. (2006)
PNAS
103, 19635-19640
| Abstract »
| Full Text »
| PDF »
- pH-Dependent mismatch discrimination of oligonucleotide duplexes containing 2'-deoxytubercidin and 2- or 7-substituted derivatives: protonated base pairs formed between 7-deazapurines and cytosine.
- X. Peng, H. Li, and F. Seela (2006)
Nucleic Acids Res.
34, 5987-6000
| Abstract »
| Full Text »
| PDF »
- JAK2 V617F in Myeloid Disorders: Molecular Diagnostic Techniques and Their Clinical Utility: A Paper from the 2005 William Beaumont Hospital Symposium on Molecular Pathology.
- D. P. Steensma (2006)
J. Mol. Diagn.
8, 397-411
| Abstract »
| Full Text »
| PDF »
- Emerging technologies in DNA sequencing.
- M. L. Metzker (2005)
Genome Res.
15, 1767-1776
| Abstract »
| Full Text »
| PDF »
- Color-blind fluorescence detection for four-color DNA sequencing.
- E. K. Lewis, W. C. Haaland, F. Nguyen, D. A. Heller, M. J. Allen, R. R. MacGregor, C. S. Berger, B. Willingham, L. A. Burns, G. B. I. Scott, et al. (2005)
PNAS
102, 5346-5351
| Abstract »
| Full Text »
| PDF »
- Sequencing of Genomic DNA by Combined Amplification and Cycle Sequencing Reaction.
- K. M. Murphy, K. D. Berg, and J. R. Eshleman (2005)
Clin. Chem.
51, 35-39
| Abstract »
| Full Text »
| PDF »
- Comparative Kinetics of Nucleotide Analog Incorporation by Vent DNA Polymerase.
- A. F. Gardner, C. M. Joyce, and W. E. Jack (2004)
J. Biol. Chem.
279, 11834-11842
| Abstract »
| Full Text »
| PDF »
- Digital Detection of Genetic Mutations Using SPC-Sequencing.
- H. Ruparel, M. E. Ulz, S. Kim, and J. Ju (2004)
Genome Res.
14, 296-300
| Abstract »
| Full Text »
| PDF »
- Efficient incorporation of positively charged 2', 3'-dideoxynucleoside-5'-triphosphates by DNA polymerases and their application in 'direct-load' DNA sequencing.
- P. J. Finn, M. G. Bull, H. Xiao, P. D. Phillips, J. R. Nelson, G. Grossmann, S. Nampalli, B. F. McArdle, J. A. Mamone, P. K. Flick, et al. (2003)
Nucleic Acids Res.
31, 4769-4778
| Abstract »
| Full Text »
| PDF »
- Incorporation of reporter molecule-labeled nucleotides by DNA polymerases. I. Chemical synthesis of various reporter group-labeled 2'-deoxyribonucleoside-5'-triphosphates.
- G. Giller, T. Tasara, B. Angerer, K. Muhlegger, M. Amacker, and H. Winter (2003)
Nucleic Acids Res.
31, 2630-2635
| Abstract »
| Full Text »
| PDF »
- Incorporation of reporter molecule-labeled nucleotides by DNA polymerases. II. High-density labeling of natural DNA.
- T. Tasara, B. Angerer, M. Damond, H. Winter, S. Dorhofer, U. Hubscher, and M. Amacker (2003)
Nucleic Acids Res.
31, 2636-2646
| Abstract »
| Full Text »
| PDF »
- Switch Moiety in Agonist/Antagonist Dual Effect of S19 Ribosomal Protein Dimer on Leukocyte Chemotactic C5a Receptor.
- A. Shrestha, M. Shiokawa, T. Nishimura, H. Nishiura, Y. Tanaka, N. Nishino, Y. Shibuya, and T. Yamamoto (2003)
Am. J. Pathol.
162, 1381-1388
| Abstract »
| Full Text »
| PDF »
- The Human Genome: Genes, Pseudogenes, and Variation on Chromosome 7.
- R.H. WATERSTON, L.W. HILLIER, L.A. FULTON, R.S. FULTON, T.A. GRAVES, K.H. PEPIN, P. BORK, M. SUYAMA, D. TORRENTS, A.T. CHINWALLA, et al. (2003)
Cold Spring Harb Symp Quant Biol
68, 13-22
| Abstract »
| PDF »
- Comparative Analysis of Human Chromosome 22q11.1-q12.3 with Syntenic Regions in the Chimpanzee, Baboon, Bovine, Mouse, Pufferfish, and Zebrafish Genomes.
- B.A. ROE, C. LAU, S. OOMMEN, J. LI, A. HUA, H.S. LAI, S. KENTON, J. WHITE, and H. WANG (2003)
Cold Spring Harb Symp Quant Biol
68, 265-274
| Abstract »
| PDF »
- Melanocortin 4 Receptor Sequence Variations Are Seldom a Cause of Human Obesity: The Swedish Obese Subjects, the HERITAGE Family Study, and a Memphis Cohort.
- P. Jacobson, O. Ukkola, T. Rankinen, E. E. Snyder, A. S. Leon, D. C. Rao, J. S. Skinner, J. H. Wilmore, L. Lonn, G. S. Cowan Jr., et al. (2002)
J. Clin. Endocrinol. Metab.
87, 4442-4446
| Abstract »
| Full Text »
| PDF »
- Challenging artificial genetic systems: thymidine analogs with 5-position sulfur functionality.
- H. A. Held and S. A. Benner (2002)
Nucleic Acids Res.
30, 3857-3869
| Abstract »
| Full Text »
| PDF »
- Synthesis and application of charge-modified dye-labeled dideoxynucleoside-5'-triphosphates to 'direct-load' DNA sequencing.
- P. J. Finn, L. Sun, S. Nampalli, H. Xiao, J. R. Nelson, J. A. Mamone, G. Grossmann, P. K. Flick, C. W. Fuller, and S. Kumar (2002)
Nucleic Acids Res.
30, 2877-2885
| Abstract »
| Full Text »
| PDF »
- Simultaneous Sequencing of Multiple Polymerase Chain Reaction Products and Combined Polymerase Chain Reaction with Cycle Sequencing in Single Reactions.
- K. M. Murphy and J. R. Eshleman (2002)
Am. J. Pathol.
161, 27-33
| Abstract »
| Full Text »
| PDF »
- Mutations in NPHS2 Encoding Podocin Are a Prevalent Cause of Steroid-Resistant Nephrotic Syndrome among Israeli-Arab Children.
- Y. Frishberg, C. Rinat, O. Megged, E. Shapira, S. Feinstein, and A. Raas-Rothschild (2002)
J. Am. Soc. Nephrol.
13, 400-405
| Abstract »
| Full Text »
| PDF »
- Identification of Receptor-Binding Sites of Monocyte Chemotactic S19 Ribosomal Protein Dimer.
- Y. Shibuya, M. Shiokawa, H. Nishiura, T. Nishimura, N. Nishino, H. Okabe, K. Takagi, and T. Yamamoto (2001)
Am. J. Pathol.
159, 2293-2301
| Abstract »
| Full Text »
| PDF »
- DNA sequencing using biotinylated dideoxynucleotides and mass spectrometry.
- J. R. Edwards, Y. Itagaki, and J. Ju (2001)
Nucleic Acids Res.
29, e104
| Abstract »
| Full Text »
| PDF »
- Characterization of fsr, a Regulator Controlling Expression of Gelatinase and Serine Protease in Enterococcus faecalis OG1RF.
- X. Qin, K. V. Singh, G. M. Weinstock, and B. E. Murray (2001)
J. Bacteriol.
183, 3372-3382
| Abstract »
| Full Text »
| PDF »
- Enhancing the catalytic repertoire of nucleic acids: a systematic study of linker length and rigidity.
- S. E. Lee, A. Sidorov, T. Gourlain, N. Mignet, S. J. Thorpe, J. A. Brazier, M. J. Dickman, D. P. Hornby, J. A. Grasby, and D. M. Williams (2001)
Nucleic Acids Res.
29, 1565-1573
| Abstract »
| Full Text »
| PDF »
- Effects of Enterococcus faecalis fsr Genes on Production of Gelatinase and a Serine Protease and Virulence.
- X. Qin, K. V. Singh, G. M. Weinstock, and B. E. Murray (2000)
Infect. Immun.
68, 2579-2586
| Abstract »
| Full Text »
| PDF »
- Improving dideoxynucleotide-triphosphate utilisation by the hyper-thermophilic DNA polymerase from the archaeon Pyrococcus furiosus.
- S. J. Evans, M. J. Fogg, A. Mamone, M. Davis, L. H. Pearl, and B. A. Connolly (2000)
Nucleic Acids Res.
28, 1059-1066
| Abstract »
| Full Text »
| PDF »
- Improved DNA Sequencing Accuracy and Detection of Heterozygous Alleles Using Manganese Citrate and Different Fluorescent Dye Terminators.
- C. Korch and H. Drabkin (1999)
Genome Res.
9, 588-595
| Abstract »
| Full Text »
| PDF »
- Toward a Complete Human Genome Sequence.
- T. S. Centre and T. W. U. G. S. Center (1998)
Genome Res.
8, 1097-1108
| Abstract »
| Full Text »
- Transcriptional sequencing: A method for DNA sequencing using RNA polymerase.
- N. Sasaki, M. Izawa, M. Watahiki, K. Ozawa, T. Tanaka, Y. Yoneda, S. Matsuura, P. Carninci, M. Muramatsu, Y. Okazaki, et al. (1998)
PNAS
95, 3455-3460
| Abstract »
| Full Text »
| PDF »
- Evolutionarily Conserved Promoter Region Containing CArG*-Like Elements Is Crucial for Smooth Muscle Myosin Heavy Chain Gene Expression.
- A. Zilberman, V. Dave, J. Miano, E. N. Olson, and M. Periasamy (1998)
Circ. Res.
82, 566-575
| Abstract »
| Full Text »
| PDF »
- Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment.
- B. Ewing, L. Hillier, M. C. Wendl, and P. Green (1998)
Genome Res.
8, 175-185
| Abstract »
| Full Text »
- MNN6, a Member of the KRE2/MNT1 Family, Is the Gene for Mannosylphosphate Transfer in Saccharomyces cerevisiae.
- X.-H. Wang, K.-i. Nakayama, Y.-i. Shimma, A. Tanaka, and Y. Jigami (1997)
J. Biol. Chem.
272, 18117-18124
| Abstract »
| Full Text »
| PDF »
- Choline monooxygenase, an unusual iron-sulfur enzyme catalyzing the first step of glycine betaine synthesis in plants: Prosthetic group characterization and cDNA cloning.
- B. Rathinasabapathi, M. Burnet, B. L. Russell, D. A. Gage, P.-C. Liao, G. J. Nye, P. Scott, J. H. Golbeck, and A. D. Hanson (1997)
PNAS
94, 3454-3458
| Abstract »
| Full Text »
| PDF »
- Lane tracking software for four-color fluorescence-based electrophoretic gel images..
- M L Cooper, D R Maffitt, J D Parsons, L Hillier, and D J States (1996)
Genome Res.
6, 1110-1117
| Abstract »
| PDF »
- Disparate Tissue-specific Expression of Members of the Tissue Kallikrein Multigene Family of the Rat.
- R. J. MacDonald, E. M. Southard-Smith, and E. Kroon (1996)
J. Biol. Chem.
271, 13684-13690
| Abstract »
| Full Text »
| PDF »
- An infrared fluorescent dATP for labeling DNA..
- D L Steffens, G Y Jang, S L Sutter, J A Brumbaugh, L R Middendorf, K Muhlegger, E R Mardis, L A Weinstock, and R K Wilson (1995)
Genome Res.
5, 393-399
| Abstract »
| PDF »
- Large-scale and automated DNA sequence determination.
- T Hunkapiller, R. Kaiser, B. Koop, and L Hood (1991)
Science
254, 59-67
| Abstract »
| PDF »
- Communication, Competition, and Secrecy: The Production and Dissemination of Research-Related Information in Genetics.
- K. W. McCain (1991)
Science Technology Human Values
16, 491-516
| Abstract »
| PDF »
- DNA diagnostics--molecular techniques and automation.
- U Landegren, R Kaiser, C. Caskey, and L Hood (1988)
Science
242, 229-237
| Abstract »
| PDF »
- DNA and RNA sequence determination based on phosphorothioate chemistry.
- G Gish and F Eckstein (1988)
Science
240, 1520-1522
| Abstract »
| PDF »
- Multiplex DNA sequencing.
- G. Church and S Kieffer-Higgins (1988)
Science
240, 185-188
| Abstract »
| PDF »
|
|