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Published Online October 18, 2007
Science DOI: 10.1126/science.1147112

Reports

Submitted on June 27, 2007
Accepted on October 9, 2007

Genome-Wide Experimental Determination of Barriers to Horizontal Gene Transfer

Rotem Sorek 1, Yiwen Zhu 2, Christopher J. Creevey 3, M. Pilar Francino 4, Peer Bork 3, Edward M. Rubin 1*

1 DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, USA.; Genome Sciences Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
2 Genome Sciences Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
3 European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany.
4 DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, USA.

* To whom correspondence should be addressed.
Edward M. Rubin , E-mail: EMRubin{at}lbl.gov

Horizontal gene transfer, in which genetic material is transferred from the genome of one organism to another, has been investigated in microbial species mainly through computational sequence analyses. To address the lack of experimental data, we studied the attempted movement of 246,045 genes from 79 prokaryotic genomes into Escherichia coli and identified genes that consistently fail to transfer. We studied the mechanisms underlying transfer inhibition by placing coding regions from different species under the control of inducible promoters. Our data suggest that toxicity to the host inhibited transfer regardless of the species of origin and that increased gene dosage and associated increased expression may be a predominant cause for transfer failure. While these experimental studies examined transfer solely into E. coli, a computational analysis of gene transfer rates across available bacterial and archaeal genomes supports that the barriers observed in our study are general across the tree of life.


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