Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Published Online May 24, 2007
Science DOI: 10.1126/science.1140247

Reports

Submitted on January 22, 2007
Accepted on May 10, 2007

Genetic Properties Influencing the Evolvability of Gene Expression

Christian R. Landry 1*, Bernardo Lemos 2*, Scott A. Rifkin 3, W. J. Dickinson 4, Daniel L. Hartl 2

1 Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138 USA; Current address: Département de Biochimie, Université de Montréal, 2900 Blvd. Edouard-Montpetit, Montréal, Qc H3T 1J4, Canada.
2 Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138 USA.
3 Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138 USA.; Current address: Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge MA 02139, USA.
4 Department of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT 84112 USA.

* To whom correspondence should be addressed.
Christian R. Landry , E-mail: clandry{at}post.harvard.edu
Bernardo Lemos , E-mail: blemos{at}oeb.harvard.edu

Identifying the properties of gene networks that influence their evolution is a fundamental research goal. However, modes of evolution cannot be inferred solely from the distribution of natural variation because selection interacts with demography and mutation rates to shape polymorphism and divergence. Here we estimate the effects of naturally occurring mutations on gene expression while minimizing the effect of natural selection. We demonstrate that sensitivity of gene expression to mutations increases with both increasing trans-mutational target size and the presence of a TATA-box. Genes with greater sensitivity to mutations are also more sensitive to systematic environmental perturbations and stochastic noise. These results provide a mechanistic basis for gene expression evolvability that can serve as a foundation for realistic models of regulatory evolution.


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Not By Design: Retiring Darwin's Watchmaker. John O. Reiss..
A.-M. C. Hodge (2009)
Integr. Comp. Biol. 49, 723-725
   Full Text »    PDF »
Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. IV. Genetic Constraints Guide Evolutionary Trajectories in a Parallel Adaptive Radiation.
M. J. McDonald, S. M. Gehrig, P. L. Meintjes, X.-X. Zhang, and P. B. Rainey (2009)
Genetics 183, 1041-1053
   Abstract »    Full Text »    PDF »
Global Analysis of Allele-Specific Expression in Arabidopsis thaliana.
X. Zhang and J. O. Borevitz (2009)
Genetics 182, 943-954
   Abstract »    Full Text »    PDF »
Characterization of sINR, a strict version of the Initiator core promoter element.
G. Yarden, R. Elfakess, K. Gazit, and R. Dikstein (2009)
Nucleic Acids Res. 37, 4234-4246
   Abstract »    Full Text »    PDF »
Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability.
M. D. Vinces, M. Legendre, M. Caldara, M. Hagihara, and K. J. Verstrepen (2009)
Science 324, 1213-1216
   Abstract »    Full Text »    PDF »
A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation.
I. Tirosh, S. Reikhav, A. A. Levy, and N. Barkai (2009)
Science 324, 659-662
   Abstract »    Full Text »    PDF »
Upstream Stimulatory Factor Is Required for Human Angiotensinogen Expression and Differential Regulation by the A-20C Polymorphism.
M. E. Dickson, X. Tian, X. Liu, D. R. Davis, and C. D. Sigmund (2008)
Circ. Res. 103, 940-947
   Abstract »    Full Text »    PDF »
Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression.
B. Lemos, L. O. Araripe, P. Fontanillas, and D. L. Hartl (2008)
PNAS 105, 14471-14476
   Abstract »    Full Text »    PDF »
From the Cover: A genome-wide view of the spectrum of spontaneous mutations in yeast.
M. Lynch, W. Sung, K. Morris, N. Coffey, C. R. Landry, E. B. Dopman, W. J. Dickinson, K. Okamoto, S. Kulkarni, D. L. Hartl, et al. (2008)
PNAS 105, 9272-9277
   Abstract »    Full Text »    PDF »
Two strategies for gene regulation by promoter nucleosomes.
I. Tirosh and N. Barkai (2008)
Genome Res. 18, 1084-1091
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)