Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
Rhesus Macaque Genome Sequencing and Analysis Consortium

Supporting Online Material

This supplement contains:
Materials and Methods
SOM Text
Figs. S1.1 to S7.2
Tables S1.1 to S9.4 [The related zipped file includes 12 of these tables]
References and Notes

This file is in Adobe Acrobat PDF format.

Data tables. Data tables not included in main PDF file, in Excel, PDF, and HTML format. File is packaged as a compressed archive, in *.zip format; users should download the compressed file to their machine and decompress the file on their local hard drive, using the instructions below. Key to data tables is included with compressed archive.

• Table S2.3. Assembly statistics by chromosome.
• Table S2.4. Detailed comparison of three different assemblies.
• Table S4.1: Pericentric inversions.
• Table S5.1: Duplications detected in the rhesus genome by three complementary methods.
• Table S5.3: array CGH data for gene gains in macaque relative to human.
• Table S5.4: array CGH values for HLA Class I-related genes among macaque and hominoid lineages.
• Table S8.1: List of 229 gene candidates for ancestral human gene mutations.
• Table S8.2: Plasma amino levels in eight macaques.
• Table S8.3: Determination of acylcarnitine (nM) in rhesus.
• Table S9.1: List of oligonucleotide probes for rhesus mRNA transcripts on Agilent rhesus macaque microarray chip (FASTA format).
• Table S9.2: Content of Agilent rhesus macaque microarray and the sequence homology to human genes.
• Table S9.4: Hybridization of Agilent rhesus macaque microarray to samples of macaque lung infected with influenza.

1139247som_tables.zip (3.8 MB)

Instructions for downloading and decompressing files:

1. Create a temporary folder on your machine's hard drive.
2. Save the compressed archive to the temporary folder you created, using the links above.
3. Decompress the compressed file in the temporary folder using decompression software such as WinZip (Windows; www.winzip.com) or StuffIt Expander (Windows and Mac; www.stuffit.com).
4. Excel files can be opened and viewed using Microsoft Excel, the spreadsheet module of the freely downloadable Open Office suite, or the freely downloadable Excel Viewer available from Microsoft. PDF files can be opened using Adobe Reader or other PDF software. HTML files can be opened with any Web browser.