Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations
Tanmoy Bhattacharya, Marcus Daniels, David Heckerman, Brian Foley, Nicole Frahm, Carl Kadie, Jonathan Carlson, Karina Yusim, Ben McMahon, Brian Gaschen, Simon Mallal, James I. Mullins, David C. Nickle, Joshua Herbeck, Christine Rousseau, Gerald H. Learn, Toshiyuki Miura, Christian Brander, Bruce Walker, Bette Korber

Supporting Online Material

This supplement contains:
Materials and Methods
Figs. S1 and S2
Table S1
References

This file is in Adobe Acrobat PDF format.

Other Supporting Online Material for this manuscript includes the following:
Database S1

Database S1. Auxiliary data on founder effect in HIV, including alignments (FASTA), tree data (in Newick tree format files), and plots. Data are presented in a linked Web site, which is packaged in *.zip format; users should download the compressed file to their machine and decompress the file on their local hard drive, using the instructions below):

• 1131528data_s1 (0.7 MB)

Instructions for downloading and decompressing files:

1. Create a temporary folder on your machine's hard drive.
2. Save the compressed archive to the temporary folder you created, using the links above.
3. Decompress the compressed file in the temporary folder using decompression software such as WinZip (Windows; www.winzip.com) or StuffIt Expander (Windows and Mac; www.stuffit.com). Be sure that the folder structure of the compressed archive is maintained (e.g., check "Use folder names" in WinZip).
4. Use any Web browser to open the file auxiliary.shtml in the temporary directory.