| Supplemental Table 1. Examples of genes whose abnormal expression in det1 is restored by ted3 in the dark.
Values shown are fold changes in expression relative to wild type.
|
| Accession No. | Putative Gene Product | det1 | ted3 det1 |
| L41245 | thionin (Thi2.2) | 236.9 | 30.6 |
| M20308 | chalcone synthase (CHS) | 54.4 | 1.6 |
| AJ250341 | beta-amylase enzyme (ct-bmy gene) | 50.9 | 8.1 |
| AC006282 | putative glucosyl transferase | 48.7 | 1.6 |
| AAD20710 | pathogenesis related | 48.7 | 16.7 |
| U84259 | flavonol synthase | 47.8 | 1.1 |
| U61231 | cytochrome P450 (CYP89A2) | 43.3 | 2.9 |
| AF064064 | flavanone 3-hydroxylase (F3H) | 40.2 | -1.2 |
| X67816 | Eli3-1 | 37.9 | 3.4 |
| CAB37539 | cinnamyl-alcohol dehydrogenase ELI3-2 | 37.5 | 3.4 |
| X72022 | pathogenesis related | 35.6 | 20.1 |
| AAD26481 | constance like B box zinc finger | 36.5 | 16 |
| AAC00607 | rippening induced | 28.5 | 2.1 |
| Z97342 | putative beta-amylase | 27 | 4.6 |
| AAC25517 | similar to GA-regulated pro2 (GAST1) | 25.2 | 6.9 |
| AAC83044 | similar to glycoprotein EP (s locus) | 25.2 | 2.8 |
| AJ250341 | beta-amylase | 24.6 | 3.4 |
| AAD17371 | similar to arginases | 20.8 | 5.6 |
| Y18227 | blue copper binding-like protein | 20.1 | 5.5 |
| AL035709 | squalene epoxidase-like | 19.5 | 2.8 |
| AAD23681 | plastidic aldolase | 19.4 | 16.8 |
| CAA16685 | endoxyloglucan transferase-like protein | 18 | 7.8 |
| AAB71476 | similar to RPS-2 disease resistance protein | 17.9 | 7.3 |
| AAD03445 | methione sulfoxide reductase like (msrA) | 17.4 | 1.6 |
| AJ131464 | nitrate transporter | 16.3 | 5.1 |
| AF023167 | adenosine-5 -phosphosulfate reductase (APSR) | 15.4 | 1.2 |
| U38416 | ferulate-5-hydroxylase (FAH1) | 14.9 | 4.5 |
| CAB38204 | cytochrome P450-like | 14.5 | 1 |
| L27158 | omega-3 fatty acid desaturase (fad8) | 14.1 | 4.2 |
| AAD32792 | putative alcohol dehydrogenase | 12.8 | 1.7 |
| AAD20151 | putative glucosyl transferase | 12.4 | -1 |
| CAB37533 | glycine hydroxymethyltransferase like | 12.7 | 7.2 |
| X97484 | putative phosphate permease | 11.2 | 5.6 |
| U96045 | APS reductase (PRH) | 11 | 1 |
| Z97339 | indole-3-acetate beta-glucosyltransferase like | 10.8 | 4.2 |
| AAC83044 | similar to glycoprotein EP1 | 10.7 | 1.1 |
| AAD30627 | Similar to indole-3-acetate beta-glucosyltransferase | 10.6 | -1.2 |
| AAC95203 | putative tropinone reductase | 10.6 | -1 |
| AF054617 | one helix protein (OHP) | 10.6 | 4.5 |
| AF106088 | 4-coumarate:CoA ligase 3 | 10.3 | 1.2 |
| CAB36854 | disease resistance like, receptor kinase | 10.1 | 1.1 |
| AAD23676 | putative cell division inhibitor | 10 | 2.2 |
| CAA17540 | similar to sigma 70 operon | 9.7 | 1.1 |
| CAA17540 | mixed elicitor induced | 9.7 | -1.1 |
| AL035709 | endo-xyloglucan transferase-like | 9.6 | 4.1 |
| AAD43620 | disease resistance like | 9.4 | 5.8 |
| AAC19308 | myc-like transcriptional factor | 9.3 | 2.6 |
| U70616 | ADP glucose pyrophosphorylase small subunit | 9.2 | 3.6 |
| Z46823 | steroid sulfotransferase | 9.3 | 1.2 |
| AAF99741 | lecithin-cholesterol acyl transferase(LCAT1) | 9 | 2.9 |
| Y11829 | hsp88.1 | 8.9 | 1.2 |
| AF062590 | peroxisomal-3-keto-acyl-CoA thiolase 1 | 8.9 | -1 |
| AF134132 | early light-inducable protein (Elip) | 8.7 | -1.2 |
| AF188334 | Toll/interleukin-1 receptor-like protein (TIR) | 8.6 | -2 |
| M86358 | chalcone isomerase | 8.5 | 2.5 |
| Z97342 | disease resistance RPP5 like | 8.5 | 2.2 |
| AL023094 | homeodomain-like | 8.5 | 3.4 |
| CAB40757 | glutathione peroxidase like | 8.4 | 1 |
| AAC95204 | tropinone reductase | 8.4 | 1.9 |
| AAD22297 | purple acid phosphatase precursor | 8.4 | 2.1 |
| U40856 | AIG1 | 8.4 | -1 |
| AAD12002 | calcium binding protein | 8.4 | 1.8 |
| AAC98029 | auxin induced zinc binding dehydrogenase | 8.4 | 4.6 |
| U75201 | germin-like | 8.2 | 5.9 |
| CAB42912 | protein 1 PSII | 8.2 | 7.2 |
| AAB64044 | endochitinase | 8 | 2.4 |
| Z49777 | isoflavonoid reductase | 8 | 1.8 |
| M64115 | glyceraldehyde-3-phosphate dehydrogenase B subunit (GapB) | 8 | 7.4 |
| Z95751 | MYB | 7.9 | 3.7 |
| AAC24180 | replication protein A1 | 7.8 | 2.3 |
| U30476 | expansin At-EXP1 | 7.8 | 3.6 |
| AAD03448 | glutathione-regulated potassium efflux system protein | 7.7 | 1.8 |
| X99808 | chloroplast FtsH protease | 7.6 | 1.9 |
| AAC95192 | putative glutathione-s-transferase | 7.6 | -1.9 |
| AAC35230 | phosphate cotransporter | 7.6 | 4.3 |
| AAD10163 | putative retroelement protein | 7.5 | 2.1 |
| AAB60905 | ACC1 homolog | 7.5 | 1.3 |
| AAD23055 | calmodulin binding ion channel | 7.4 | 1.5 |
| L43080 | pEARLI 1 | 7.4 | 2.7 |
| CAB51215 | PEX11 | 7.4 | 4.8 |
| U44133 | violaxanthin de-epoxidase precursor (AVDE1) | 7.3 | 3 |
| AAD30584 | putative prenyltransferase | 7.3 | 1.6 |
| M35868 | ferrodoxin precursor | 7 | 3.8 |
| AACC95202 | putative tropinone reductase | 7 | 3.1 |
| AAB87111 | cytochrome P450 | 7 | 1.6 |
| Z97048 | R2R3 MYB | 6.9 | 1.6 |
| M65137 | rRNA | 6.9 | 2.1 |
| AL078620 | cytochrome P450-like | 6.9 | 2 |
| AF026167 | ankyrin repeat protein | 6.5 | -1.8 |
| AAC31228 | putative glycine dehydrogenase | 6.7 | 2.8 |
| AF089710 | disease resistance protein RPP8 | 6.6 | 4.8 |
| S45911 | glyceraldehyde-3-phosphate-dehydrogenase subunit GapB | 6.5 | 6.2 |
| L23968 | lipoxygenase (Lox2) | 6.4 | -1.1 |
| AAD32921 | putative GDSL-motif lipase/hydrolase | 6.4 | 1.4 |
| CAB38817 | fructose-bisphosphate aldolase | 6.4 | 3.7 |
| AF026167 | protein kinase | 6.4 | 1.7 |
| AF127664 | NBD-like | 6.4 | -1.1 |
| AF007778 | trehalose-6-phosphate phosphatase (AtTPPA) | 6.3 | 2.1 |
| D85339 | hydroxypyruvate reductase | 6.3 | 7.4 |
| AAC28198 | similar to fibrillin | 6.3 | 1.6 |
| AAC67365 | lipid transfer protein | 6.2 | 2.9 |
| AAC32234 | ripening associated protein kinase | 6.2 | 1.3 |
| U77347 | lethal leaf-spot 1 homolog (Lls1) | 6.1 | 1.2 |
| CAA16930 | TMV resistance protein N-like | 6.1 | 1.5 |
| AAC23773 | putative acetone-cyanohydrin lyase | 6.1 | 1.9 |
| AAD15363 | En/Spm like | 5.9 | -1.3 |
| AAC72875 | ABC1 | 5.9 | -1.7 |
| CAB36747 | acyl carrier-like protein | 5.9 | 3.1 |
| AJ238804 | lipid transfer protein | 5.9 | 2.9 |
| Z99707 | hydroxynitrile lyase like | 5.9 | 1.5 |
| AAB64339 | FKBP type peptidyl-prolyl cis-trans isomerase | 5.8 | 2.1 |
| AAC95207 | putative tropinone reductase | 5.8 | 3.1 |
| AJ131392 | alternative oxidase | 5.8 | 1.1 |
| CAA18476 | serine/threonine kinase-like | 5.8 | 1.8 |
| CAB43970 | putative beta-glucosidase | 5.7 | 2.2 |
| AAD14475 | DEAD box RNA helicase (RH22) | 5.7 | -1.8 |
| AAD20099 | glutamate decarboxylase (dehydration stress) | 5.7 | -1 |
| Y10555 | CONSTANS like 1 (COL1) | 5.7 | 3.4 |
| AAD15594 | cystein proteinase | 5.6 | 1.1 |
| Y08568 | trehalose-6-phosphate synthase. | 5.6 | 2.5 |
| Z68495 | Mg chelatase subunit H (CHLH) | 5.6 | 2.6 |
| CAA22974 | Proline-rich APG-like | 5.6 | 6.8 |
| AAD14529 | putative ribose 5-phosphate isomerase | 5.5 | 2.3 |
| AF144386 | thioredoxin f2 | 5.5 | 2.3 |
| AJ222644 | asparaginyl-tRNA synthetase | 5.5 | 1 |
| AAD29796 | auxin-regulated | 5.5 | 3.6 |
| AAB87114 | auxin response GH3 like | 5.5 | 1.4 |
| AAC97998 | ACC oxidase | 5.4 | 3.7 |
| AAC27411 | nodulin like | 5.4 | 1.3 |
| AAC79134 | putative disease resistance, NBS-LRR | 5.3 | 1.5 |
| AJ002399 | monosaccharide transporter STP3 | 5.3 | -1.1 |
| AJ243705 | ferredoxin-NADP+ reductase precursor (petH gene) | 5.3 | 3.8 |
| L14845 | chloroplast stromal cyclophilin (ROC4) | 5.3 | 1.9 |
| AAD15344 | similar to PHZF, catalyzing hydroxylation of phenazine-1-caboxylic acid | 5.2 | -1.5 |
| CAB39628 | cytochrome c | 5.2 | 1.4 |
| X65541 | carbonic anhydrase | 5.1 | 1.2 |
| AJ245632 | psaH2 (PSI) | 5.1 | 4.4 |
| AAD31572 | putative xyloglucan endo-transglycosylase | 5.1 | 2.5 |
| AF135455 | SPA1 | 5.1 | 3.3 |
| AAC67364 | putative nonspecific lipid transfer | 5 | 2.2 |
| AAC20729 | ftsH chloroplast protease | 5 | 2.3 |
| CAB38269 | UDP rhamnose-anthocyanidin-3-glucose rhamnosyltransferase like | 5 | 1.2 |
| M98456 | recombination and DNA-damage resistance protein (DRT112) | 5 | 4 |
| AAC27170 | Hevea ethylene-responsive like protein | 5 | 4.3 |
| X98925 | stromal ascorbate peroxidase | 3.3 | -2.5 |
| AJ131206 | microbody NAD-dependent malate dehydrogenase | 3.7 | 2.9 |
| AL022023 | catalase | 3 | 2 |
| AAC78545 | late embryogeneis abundant M17 protein, stress induced | -15.3 | -3.6 |
| U43489 | xyloglucan endotransglycosylase-related protein (XTR7) | -14 | -1.8 |
| AF166352 | alanine:glyoxylate aminotransferase 2 homolog (AGT3) | -12.3 | -1.1 |
| X91913 | oleosin type3 protein | -11.7 | -7.9 |
| X98543 | endo-1,4-beta-glucanase | -11.2 | -3.1 |
| AAC34333 | branched chain amino acid aminotransferase | -10.7 | 1.1 |
| AAD15406 | putative cysteine proteinase inhibitor B | -10.7 | -2.7 |
| M83534 | isocitrate lyase | -9.9 | -1.7 |
| X82624 | putative  -glucosidase | -9.3 | -1.1 |
| AL049876 | disease resistance response | -9.2 | -1.3 |
| AJ222713 | nap, in elicited cell culture | -9 | -1.4 |
| AAC27834 | putative disease resistance protein | -8.9 | 1.3 |
| X98809 | peroxidase ATP5a | -8.7 | 1.6 |
| AAD25763 | putative berberine bridge enzyme | -8.6 | -1.1 |
| U49076 | IAA20 | -8.4 | -2.8 |
| U59467 | aromatic rich glycoprotein JP630 (JP630) | -8 | -1.8 |
| U59467 | aromatic rich glycoprotein JP630 (JP630) | -8 | -1.8 |
| U49075 | early auxin-induced (IAA19) | -8 | -1.6 |
| AAC26690 | cytochrome P450 | -7.4 | -1.8 |
| D64155 | aldehyde decarbonylase | -7 | -3 |
| D64155 | aldehyde decarbonylase | -7 | -3 |
| CAB37531 | heat shock protein 70 like | -6.7 | -2.5 |
| CAA20568 | stress condition | -6.4 | 1.7 |
| CAB36850 | RNA binding | -6.4 | -1.8 |
| U15683 | gibberellin-regulated (GASA4) | -6.4 | -1.4 |
| CAB43877 | deletion treated | -6.2 | -1.5 |
| AAC62135 | zinc finger protein | -6.2 | 1.4 |
| U43486 | xyloglucan endotransglycosylase-related protein (XTR4) | -6.1 | -1.3 |
| AAC67338 | putative MAP kinase | -5.9 | -2 |
| AL096882 | drought-inducible cysteine proteinase RD21A | -5.8 | 1.1 |
| U18048 | IAA6 | -5.8 | -1.9 |
| AL035521 | fatty acid elongase | -5.6 | -1 |
| AL096882 | drought-inducible cysteine proteinase RD21A | -5.5 | -1 |
| AL022373 | putative auxin-induced protein | -5.3 | -2.5 |
| X98316 | peroxidase, prxr4 | -5.3 | -1 |
| AAD22126 | putative pectinesterase | -5.3 | -1.6 |
| AF040632 | IAA17/AXR3-1 | -5.3 | -1.8 |
| AAB95283 | putative anthocyanin 5-aromatic acyltransferase | -5.2 | -1.6 |
| AAC16938 | putative kinase | -5.2 | -1.6 |
| AAD20423 | RAS family GTP binding protein | -5.1 | -1.6 |
| AAC35239 | putative flavonol 3-O-glucosyltransferase | -5.1 | -1.5 |
| AAC98035 | similar to aldehyde dehydrogenase | -5.1 | -1.4 |
| AAD24368 | putative disease resistance response protein | -5.1 | -1.5 |
| Z97338 | cytochrome P450 like protein | -5.1 | -1.6 |
| U73781 | histone H1-3 (His1-3) | -5 | -1.6 |
| CAB37514 | farnesylated protein (ATFP6) | -5 | -1.3 |
| X98316 | peroxidase prxr4 | -4.4 | -1 |
| L40954 | oleosin | -4.1 | -2.6 |
| X91918 | oleosin type4 protein | -4.5 | -3.6 |
| X98321 | peroxidase prx9 | -3.9 | -1.1 |
| U97684 | peroxidase precursor RCI3A | -3.3 | -1.3 |
| X98319 | peroxidase prxr7 | -3 | -1.7 |
| AF166351 | alanine:glyoxylate aminotransferase 2 homolog (AGT2) | -3.1 | -1.1 |
| U74610 | glyoxylase II | -3 | -1 |
| AF053345 | fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1) | -3 | -1.6 |
