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Allosteric Activation of a Spring-Loaded Natriuretic Peptide Receptor Dimer by Hormone
Xiao-lin He, Dar-chone Chow, Monika M. Martick, and K. Christopher Garcia
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Supplementary Material
Supplemental Figure 1. Electron density of the NPR-C structures, and the bound CNP hormone. (
A) SIGMAA-weighted omit map (2Fo-Fc) of a portion of the dimer interface between the NH
2-terminal domains of the NPR-C complex at 2.0 Å resolution. (
B) SIGMAA-weighted omit map of the N-linked glycan at Asparagine-248 on the unliganded NPR-C at 2.9 Å. (
C) SIGMAA-weighted omit map of the single bound CNP peptide conformation in two orientations at 2.0 Å from the side (left) and two "end-on" views looking from the top down (top) and the bottom up (bottom). The twofold symmetry of the peptide electron density is clear in all three views, as is the identical unique conformation of the peptide in both orientations.

Medium version | Full size version
Supplemental Figure 2. Comparison of NPR-A and NPR-C dimers. (A) A crystal packing diagram [with the program O (40)] of the unliganded rat NPR-A structure is shown indicating the "tail-to-tail" dimer initially chosen to accommodate a 2:2 stoichiometry. However, the physiologically-relevant NPR-A dimer consistent with a 1:2 stoichiometry is in the same crystal lattice and is identical to that seen in human NPR-C. (B) The physiologically relevant dimer of NPR-A is aligned by the membrane-proximal domains to NPR-C, showing the identical topology. As for unliganded NPR-C, hormone binding to this NPR-A dimer will require closing of the interdimer gap.

Medium version | Full size version
| Supplemental Table 1. Site I and Site II contact surfaces (top) and hydrogen bonds (bottom) in the NPR-C/CNP interfaces. Buried surface area was calculated with a 1.4 Å probe radius.
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| Site I (Total buried surface 1346 Å2) | | Site II (Total buried surface 1018 Å2) |
| CNP | Neighboring NPR-C (I) residues (<4.5 Å) | | Neighboring NPR-C ( II) residues (<4.5 Å) |
| Gly5 | I188 | |
| Cys6 | Y159*, I188 | |
| Phe7 | Y159*, Y169 , L172 , E173*, H176, I188 | |
| Gly8 | H176 | |
| Leu9 | H176, E177, Q180 | |
| Lys10 | | | | | K163 |
| Leu11 | Y169 | | K163 |
| Asp12 | G118*, H121, Y126* | |
| Arg13 | R100*, E125 | | N65, Y93*, K163 |
| Ile14 | Y93*, R166*, Y169 , F170* | |
| Gly15 | Y93* | | Y93* |
| Ser16 | | | | | Y93*, A96*, R100* |
| Met17 | Y93* | | A96*, P97, R100*, G118*, F119*, Y126* |
| Ser18 | K163 | |
| Gly19 | | | | | E173* |
| Leu20 | | | | | Y169* |
| Gly21 | | | | | Y169* |
| Cys22 | | |
*conserved across NPR family. similar hydrophobic or aromatic residues. |
| Hydrogen bonds between NPR-C and CNP in site I and site II of the complex |
| Site I atoms | | | Site II atoms |
| NPR-C ( I ) | CNP | Distance (Å) | | | NPR-C ( II ) | CNP | Distance (Å) |
E125 O 1 | R13 N 2 | 3.1 | | | R100* N 1 | Ser 16 O | 3.2 |
E125 O 2 | R13 N 1 | 2.7 | | | Y169# OH | Gly21 O | 3.0 |
H176 N 2 | G 8 N | 3.1 | | | E173* O 2 | Leu 20 N | 3.1 |
| * conserved across NPR family. |