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Science 20 July 2001
DOI: 10.1126/science.1061573


Abstract
Full Text
Haplotype Diversity and Linkage Disequilibrium at Human G6PD: Recent Origin of Alleles That Confer Malarial Resistance
Sarah A. Tishkoff, Robert Varkonyi, Nelie Cahinhinan, Salem Abbes, George Argyropoulos, Giovanni Destro-Bisol, Anthi Drousiotou, Bruce Dangerfield, Gerard Lefranc, Jacques Loiselet, Anna Piro, Mark Stoneking, Antonio Tagarelli, Giuseppe Tagarelli, Elias H. Touma, Scott M. Williams, Andrew G. Clark

Supplementary Material

Supplemental Table 1. APPENDIX A: G6PD microsatellite allele frequencies and heterozygosity values. N represents the number of chromosomes typed. Samples are from unrelated individuals that were chosen at random from the population (not based on G6PD deficiency phenotype).
(AC)n
PopulationN164166168176178180182184186188Het
Bantu (mixed)810.000.210.000.050.090.010.290.330.010.000.752
Sierra Leone (mixed)290.070.210.000.000.210.000.310.210.000.000.767
Mende460.260.350.020.000.020.000.090.260.000.000.733
Temne380.050.420.000.030.050.000.050.370.030.000.677
Ghana (mixed)140.000.140.070.000.000.000.290.500.000.000.641
Fante180.220.220.000.000.110.000.070.390.000.000.734
Ga420.120.500.000.000.070.000.190.120.000.000.680
Cameroon (mixed)160.000.440.000.060.060.060.060.310.000.000.696
Bakaka210.140.100.000.140.000.000.230.380.000.000.754
Tunisian570.000.120.040.000.580.000.160.040.070.000.600
Lebanese430.000.000.000.000.840.000.120.050.000.000.278
Cypriot330.000.000.000.000.820.000.090.030.030.030.317
Italian200.000.000.000.000.750.000.250.000.000.000.375
European (mixed)150.000.000.000.001.000.000.000.000.000.000.00
Papua New Guinean250.000.000.000.001.000.000.000.000.000.000.00
(AT)n
PopulationN125131133135137139141143145147149
Bantu (mixed)830.000.000.000.000.310.120.050.040.020.020.05
Sierra Leone (mixed)290.030.000.000.000.100.100.070.170.100.030.17
Mende440.110.020.020.020.090.110.070.020.250.020.05
Temne350.000.030.000.030.230.060.030.090.200.060.00
Ghana (mixed)120.000.000.000.000.170.170.080.000.000.170.00
Fante180.000.000.000.000.330.000.060.060.060.110.17
Ga440.000.020.000.020.110.070.020.050.110.090.02
Cameroon (mixed)160.000.000.000.190.060.060.060.000.190.060.00
Bakaka210.000.000.050.000.190.140.000.050.000.140.05
Tunisian570.000.000.000.020.090.350.210.040.000.090.05
Lebanese430.000.000.000.000.090.560.160.090.000.050.02
Cypriot330.000.000.000.000.090.330.360.060.030.030.03
Italian200.000.000.000.000.150.400.200.000.050.050.10
European (mixed)150.000.000.000.000.330.400.270.000.000.000.00
Papua New Guinean250.000.000.000.000.760.240.000.000.000.000.00
(AT)n
PopulationN151153155157159161163165167169171
Bantu (mixed)830.080.050.010.020.020.000.020.010.010.060.02
Sierra Leone (mixed)290.030.030.030.030.000.000.000.000.000.030.02
Mende440.020.000.000.000.000.000.000.020.020.090.00
Temne350.000.000.030.000.000.060.000.090.030.000.09
Ghana (mixed)120.000.080.000.000.000.000.000.000.080.170.00
Fante180.000.000.000.000.000.060.000.000.110.000.00
Ga440.070.000.000.000.000.000.000.000.070.180.05
Cameroon (mixed)160.130.000.060.000.000.000.000.000.000.060.00
Bakaka210.100.000.050.000.000.000.050.000.050.050.00
Tunisian570.000.000.000.000.040.000.000.040.020.050.00
Lebanese430.000.020.000.000.000.000.000.000.000.000.00
Cypriot330.060.000.000.000.000.000.000.000.000.000.00
Italian200.000.000.000.000.000.000.000.000.000.000.05
European (mixed)150.000.000.000.000.000.000.000.000.000.000.00
Papua New Guinean250.000.000.000.000.000.000.000.000.000.000.00

(AT)n
PopulationN173175177179Het
Bantu (mixed)830.040.010.010.000.867
Sierra Leone (mixed)290.000.000.000.000.901
Mende440.000.000.020.020.886
Temne350.000.000.030.000.867
Ghana (mixed)120.080.000.000.000.859
Fante180.060.000.000.000.820
Ga440.070.020.000.020.908
Cameroon (mixed)160.060.000.060.000.882
Bakaka210.050.000.050.000.892
Tunisian570.000.000.020.000.806
Lebanese430.000.000.000.000.641
Cypriot330.000.000.000.000.744
Italian200.000.000.000.000.760
European (mixed)150.000.000.000.000.656
Papua New Guinean250.000.000.000.000.365

(CTT)n
PopulationN195198201204207210213216Het
Bantu (mixed)780.170.310.170.350.010.000.000.000.724
Sierra Leone (mixed)290.070.170.280.450.000.000.030.000.684
Mende460.090.220.330.370.000.000.000.000.698
Temne360.110.140.330.390.030.000.000.000.706
Ghana (mixed)140.140.290.000.500.070.000.000.000.641
Fante180.280.280.170.280.000.000.000.000.736
Ga460.300.170.300.200.020.000.000.000.751
Cameroon (mixed)160.250.190.060.500.000.000.000.000.648
Bakaka220.050.450.180.320.000.000.000.000.660
Tunisian580.120.620.090.090.000.090.000.000.577
Lebanese430.160.630.020.070.000.090.000.020.564
Cypriot330.060.730.060.000.000.120.000.030.445
Italian200.150.500.100.000.050.150.000.050.690
European (mixed)150.000.670.330.000.000.000.000.000.442
Papua New Guinean250.000.640.360.000.000.000.000.000.461


Supplemental Table 2. Appendix B: G6PD AC/AT/CTT microsatellite haplotypes plotted in Figure 2
Haplotype #ACATCTTM/-M/+AA-BN/-N/+Total N
116412520100500005
216413120100300003
316413320100200002
416413920100200002
516414120100100001
616414319800100001
716414520100200002
816414719800100001
916416320100100001
1016416520100200002
1116416719500100001
1216416720100200002
1316416919800100001
1416417320100100001
1516417520100100001
1616417720100100001
1716612520400100001
1816613520100100001
1916613720100200002
2016613919500200002
2116613919800100001
2216613920400100001
2316614519500200002
2416614520100100001
251661452040024000024
2616614719500200002
2716614720100100001
2816614920400400004
2916615719500100001
3016616120100100001
3116616519500030003
3216616520100200002
3316616719500040004
3416616720100300003
351661691950021900021
3616616920100210003
3716617119500070007
3816617120100110002
3916617319500140005
4016617319800100001
4116617320100400004
4216617719500010001
4316617720100101002
4416617919500020002
4516813719800000101
4616814119800000101
4716814520400100001
4816816919800100001
4917614119800000101
5017615320100001001
5117615320400001001
5217615519800001001
5317615520400002002
5417615720400001001
5517617519800001001
5617617720400001001
5717813519860001108
581781371982000623031
591781372010000110011
6017813720400001001
6117813720700000101
6217813721000000202
631781391950000011011
641781391980000046046
6517813920100000909
6617813920400000404
6717814119500000101
681781411980000041041
6917814120100000303
7017814319800000808
71178143201000091010
7217814519500001001
7317814519800001203
7417814719800000101
7517814919800000202
7617814920100001001
7717814920400000101
7817815719500001001
7918013720100001001
8018015120400001001
8118213719500001001
8218213720400004004
8318213721000000011
841821391980000101011
8518213920100002002
8618213920400001001
8718213921000000101
8818214119800004015
8918214120400001001
9018214319800002002
9118214320100002002
9218214520400001001
9318214719500000101
9418214719800001001
9518214720400001012
9618214721000000145
9718214721600000011
9818214919800001001
9918214920400004004
10018214920700001001
10118214921000000044
10218214921300001001
10318215119801000001
10418215120100001001
1051821512040000110011
10618215120700001001
1071821512100570002059
10818215121600000101
10918215320400003003
11018215321002000013
11118215520400002002
11218215521001000001
11318215920400000011
11418215921000000011
11518216119500001001
11618216120400001001
11718216719800001001
11818217121600000101
11918413519800003003
12018413520100001001
1211841371980000200121
12218413720100006006
1231841372040000190019
12418413919800005207
12518413920100001001
12618413920400004004
12718414119800003104
12818414120100002103
12918414120400003104
13018414319800002002
13118414719500001001
13218414719800001001
13318414720100001001
13418414720400007007
13518414720700002002
13618414920400002002
13718415121002000002
13818415320400001001
13918415920400002002
14018416320400002002
14118416720400001001
14218417719800001001
14318613719800001001
14418613919500000101
14518613919800000202
14618613920400001001
14718614119800000101
14818614319800000011
14918813919800000101





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Science. ISSN 0036-8075 (print), 1095-9203 (online)