Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis
Jane M. Carlton, Robert P. Hirt, Joana C. Silva, Arthur L. Delcher, Michael Schatz, Qi Zhao, Jennifer R. Wortman, Shelby L. Bidwell, U. Cecilia M. Alsmark, Sébastien Besteiro, Thomas Sicheritz-Ponten, Christophe J. Noel, Joel B. Dacks, Peter G. Foster, Cedric Simillion, Yves Van de Peer, Diego Miranda-Saavedra, Geoffrey J. Barton, Gareth D. Westrop, Sylke Müller, Daniele Dessi, Pier Luigi Fiori, Qinghu Ren, Ian Paulsen, Hanbang Zhang, Felix D. Bastida-Corcuera, Augusto Simoes-Barbosa, Mark T. Brown, Richard D. Hayes, Mandira Mukherjee, Cheryl Y. Okumura, Rachel Schneider, Alias J. Smith, Stepanka Vanacova, Maria Villalvazo, Brian J. Haas, Mihaela Pertea, Tamara V. Feldblyum, Terry R. Utterback, Chung-Li Shu, Kazutoyo Osoegawa, Pieter J. de Jong, Ivan Hrdy, Lenka Horvathova, Zuzana Zubacova, Pavel Dolezal, Shehre-Banoo Malik, John M. Logsdon Jr., Katrin Henze, Arti Gupta, Ching C. Wang, Rebecca L. Dunne, Jacqueline A. Upcroft, Peter Upcroft, Owen White, Steven L. Salzberg, Petrus Tang, Cheng-Hsun Chiu, Ying-Shiung Lee, T. Martin Embley, Graham H. Coombs, Jeremy C. Mottram, Jan Tachezy, Claire M. Fraser-Liggett, Patricia J. Johnson

Supporting Online Material

This supplement contains:
Materials and Methods
SOM Text
Figs. S1 to S14
Tables S1 to S26
References

Other Supporting Online Material for this manuscript includes the following:
A searchable PDF file of all consensus MrBayes phylogenetic trees for the 76 candidate LGT genes described in Table S3 can be found here. Support values corresponding to the posterior probabilities of the Bayesian analysis are followed by the corresponding bootstrap support value of the equivalent maximum likelihood distance bootstrap analysis. T. vaginalis sequences used for the blast search are indicated by abbreviated identifiers next to a black box. A star indicates that the bootstrap consensus tree did not recover the given split found in the Bayesian analysis. T. vaginalis paralogs, when present/included, are indicated with "Trichomonas vaginalis". Eukaryotic sequences are boxed to ease reading of the trees and identification of candidate LGT events. The scale bars indicate the number of inferred changes per site.

These files are in Adobe Acrobat PDF format.