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Science 31 May 2002:
Vol. 296. no. 5573, pp. 1661 - 1671
DOI: 10.1126/science.1069193
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A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome
Richard J. Mural, Mark D. Adams, Eugene W. Myers, Hamilton O. Smith, George L. Gabor Miklos, Ron Wides,
Aaron Halpern, Peter W. Li, Granger G. Sutton, Joe Nadeau, Steven L. Salzberg, Robert A. Holt, Chinnappa D.
Kodira, Fu Lu, Lin Chen, Zuoming Deng, Carlos C. Evangelista, Weiniu Gan, Thomas J. Heiman, Jiayin Li,
Zhenya Li, Gennady V. Merkulov, Natalia V. Milshina, Ashwinikumar K. Naik, Rong Qi, Bixiong Chris Shue,
Aihui Wang, Jian Wang, Xin Wang, Xianghe Yan, Jane Ye, Shibu Yooseph, Qi Zhao, Liansheng Zheng, Shiaoping
C. Zhu, Kendra Biddick, Randall Bolanos, Arthur L. Delcher, Ian M. Dew, Daniel Fasulo, Michael J. Flanigan,
Daniel H. Huson, Saul A. Kravitz, Jason R. Miller, Clark M. Mobarry, Knut Reinert, Karin A. Remington, Qing
Zhang, Xiangqun H. Zheng, Deborah R. Nusskern, Zhongwu Lai, Yiding Lei, Wenyan Zhong, Alison Yao, Ping
Guan, Rui-Ru Ji, Zhiping Gu, Zhen-Yuan Wang, Fei Zhong, Chunlin Xiao, Chia-Chien Chiang, Mark Yandell,
Jennifer R. Wortman, Peter G. Amanatides, Suzanne L. Hladun, Eric C. Pratts, Jeffery E. Johnson, Kristina L.
Dodson, Kerry J. Woodford, Cheryl A. Evans, Barry Gropman, Douglas B. Rusch, Eli Venter, Mei Wang,
Thomas J. Smith, Jarrett T. Houck, Donald E. Tompkins, Charles Haynes, Debbie Jacob, Soo H. Chin, David R.
Allen, Carl E. Dahlke, Robert Sanders, Kelvin Li, Xiangjun Liu, Alexander A. Levitsky, William H. Majoros,
Quan Chen, Ashley C. Xia, John R. Lopez, Michael T. Donnelly, Matthew H. Newman, Anna Glodek, Cheryl L.
Kraft, Marc Nodell, Feroze Ali, Hui-Jin An, Danita Baldwin-Pitts, Karen Y. Beeson, Shuang Cai, Mark Carnes,
Amy Carver, Parris M. Caulk, Angela Center, Yen-Hui Chen, Ming-Lai Cheng, My D. Coyne, Michelle
Crowder, Steven Danaher, Lionel B. Davenport, Raymond Desilets, Susanne M. Dietz, Lisa Doup, Patrick
Dullaghan, Steven Ferriera, Carl R. Fosler, Harold C. Gire, Andres Gluecksmann, Jeannine D. Gocayne, Jonathan
Gray, Brit Hart, Jason Haynes, Jeffery Hoover, Tim Howland, Chinyere Ibegwam, Mena Jalali, David Johns,
Leslie Kline, Daniel S. Ma, Steven MacCawley, Anand Magoon, Felecia Mann, David May, Tina C. McIntosh,
Somil Mehta, Linda Moy, Mee C. Moy, Brian J. Murphy, Sean D. Murphy, Keith A. Nelson, Zubeda Nuri,
Kimberly A. Parker, Alexandre C. Prudhomme, Vinita N. Puri, Hina Qureshi, John C. Raley, Matthew S.
Reardon, Megan A. Regier, Yu-Hui C. Rogers, Deanna L. Romblad, Jakob Schutz, John L. Scott, Richard Scott,
Cynthia D. Sitter, Michella Smallwood, Arlan C. Sprague, Erin Stewart, Renee V. Strong, Ellen Suh, Karena
Sylvester, Reginald Thomas, Ni Ni Tint, Christopher Tsonis, Gary Wang, George Wang, Monica S. Williams,
Sherita M. Williams, Sandra M. Windsor, Keriellen Wolfe, Mitchell M. Wu, Jayshree Zaveri, Kabir Chaturvedi,
Andrei E. Gabrielian, Zhaoxi Ke, Jingtao Sun, Gangadharan Subramanian, and J. Craig Venter
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Supplementary Material
Supplemental table 1. Mouse genes on chromosome 16 without an identifiable human counterpart.
These 14 genes appear to be unique to the mouse. For each transcript the second column gives the confidence of the prediction (Otto is highest, for the "promoted" transcripts 4 is the highest confidence and 1 is the lowest). Promote 2, Promote 3, and Promote 4 correspond to genes with 2 to 4 lines of evidence, respectively, as described in Table 8 of (1). The last column gives protein domain information (if available), the best hit (by BLASTP) for the translation of the transcript (if available) (the expectation value in parentheses), and a Gene Ontology (GO) assignment (if available).
Transcript Confidence Evidence of relationship
| mCT15271 | Otto | dbj|BAB27173.1| (AK010774) putative [Mus musculus] (4E-19) |
| mCT20612 | Otto | AA TRANSFER CLASS 2 (INTERPRO. IPR001917) |
| mCT55806 | Promote 2 | dbj|BAB24709.1| (AK006709) putative [Mus musculus] (8E-12) |
| mCT18199 | Otto | ref|NP_081926.1| (NM_027650) RIKEN cDNA 4933405P08 gene [Mus musculus] (5E-77) |
| mCT9475 | Otto | |
| mCT51327 | Promote 3 | dbj|BAB22210.1| (AK002589) putative [Mus musculus] (3E-51); GO: Function>microtubule motor |
| mCT12188 | Otto | |
| mCT15750 | Otto | ARG RICH; dbj;BAB30360.1 (AK016649) putative [Mus musculus] (0.0) |
| mCT15875 | Otto | dbj|BAB29846.1| (AK015438) putative [Mus musculus] (4E-47); GO:location> plasma membrane |
| mCT9117 | Otto | ref|NP_082881.1| RIKEN cDNA 2410116I05 gene [Mus musculus] (1E-7) |
| mCT8692 | Otto | dbj|BAB24709.1| (AK006709) putative [Mus musculus] (3E-15) |
| mCT8997 | Otto | dbj|BAB31472.1| (AK018881) putative [Mus musculus (1E-11) |
| mCT9728 | Otto | CARBOXYPEPT SER SER (INTERPRO. IPR001563) |
| mCT18217 | Otto | |
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