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Science 18 December 1998: Vol. 282. no. 5397, pp. 2220 - 2226 DOI: 10.1126/science.282.5397.2220
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Research Articles
Structure of the MscL Homolog from Mycobacterium tuberculosis: A Gated Mechanosensitive Ion Channel
Geoffrey Chang,
*
Robert H. Spencer,
*
Allen
T. Lee,
Margaret T. Barclay,
Douglas C. Rees
Mechanosensitive ion channels play a critical role in transducing
physical stresses at the cell membrane into an electrochemical response. The MscL family of large-conductance mechanosensitive channels is widely distributed among prokaryotes and may participate in
the regulation of osmotic pressure changes within the cell. In an
effort to better understand the structural basis for the function of
these channels, the structure of the MscL homolog from
Mycobacterium tuberculosis was determined by x-ray
crystallography to 3.5 angstroms resolution. This channel is organized
as a homopentamer, with each subunit containing two transmembrane helices and a third cytoplasmic helix. From the extracellular side,
a water-filled opening approximately 18 angstroms in diameter leads
into a pore lined with hydrophilic residues which narrows at the
cytoplasmic side to an occluded hydrophobic apex that may act as the
channel gate. This structure may serve as a model for other
mechanosensitive channels, as well as the broader class of pentameric
ligand-gated ion channels exemplified by the nicotinic acetylcholine
receptor.
Howard Hughes Medical Institute and Division of Chemistry and
Chemical Engineering, 147-75CH, California Institute of Technology,
Pasadena, CA 91125, USA.
*
These authors contributed equally to this work.
To whom correspondence should be addressed. E-mail:
dcrees{at}caltech.edu
The sensing of physical forces
within a cell's environment is primarily mediated by a specialized
class of membrane proteins known as mechanosensitive (MS) ion channels.
MS channels have evolved the ability to transduce mechanical strain
into an electrochemical response (1) enabling cells to
respond to stimuli such as sound, touch, gravity, and pressure.
Although several putative MS channels have been cloned, the
large-conductance mechanosensitive channels (MscL) of prokaryotes have
been most extensively characterized, primarily through the efforts of
Kung and co-workers (2-4). MscL, first isolated
from Escherichia coli, forms a nonselective ion channel of
2.5 nS conductance that is activated in vitro by the application of
membrane tension. Localized within the inner membrane (5,
6), MscL is implicated in the regulation of osmotic
pressure within the cell (7). MscL consists of
a relatively small subunit (molecular mass of ~15 kD; Fig.
1) arranged as a homomultimer, possibly a
hexamer, based upon cross-linking and electron microscopy studies (5, 6, 8). Hydropathy analysis indicates that MscL contains
two transmembrane helices, and alkaline phosphatase fusion constructs
suggest that both the NH2- and COOH-termini are colocalized
within the cytoplasm (5). Following the identification of
MscL in E. coli, homologs have been found in more than 20 divergent prokaryotic species (3, 9). Their primary
sequences exhibit a strong degree of conservation, especially within
the putative transmembrane regions (Fig. 1). Additionally, the
mechanosensitive properties for many of these homologs have been
confirmed by patch-clamp studies, although differences in gating
kinetics and pressure sensitivity are evident (3).
Fig. 1.
The amino acid sequence (40)
alignment for several MscL homologs produced using the program CLUSTALX
(41). Residues are colored according to their acidic (red),
basic (blue), polar (green), or hydrophobic (gray) character. The
transmembrane and cytoplasmic helices for the Tb-MscL structure are
indicated above the sequence alignment for reference, and pore-lining
residues are denoted by an asterisk, including residues facing into the
cytoplasmic helical bundle. The sequence for M. leprae was
identified in a BLAST search of data from the Sanger Genome Project and
is included for comparison with the M. tuberculosis sequence
(identity = 73%). The following GenBank accession numbers
reference the sequences used for the alignments: B. subtilis, Z83337; E. coli, P23867; H. influenzae, U32745; M. tuberculosis,
AL021999.
[View Larger Version of this Image (51K GIF file)]
Structural characterization of MscL would establish not only the
architecture of these channels but also aid in understanding the basic
mechanism of mechanosensation. As recently demonstrated by the
structure of the K+ channel from Streptomyces
lividans (KcsA) (10), bacterial channels have important
advantages for structural analyses, including relatively simple
architecture and expressibility. We identified a MscL homolog in the
pathogenic bacterium M. tuberculosis (Tb-MscL) that contains
151 amino acids and exhibits an overall 37% sequence identity to the
E. coli MscL (Eco-MscL). The crystal structure of Tb-MscL
determined at 3.5 Å resolution establishes the structural organization
of this integral membrane protein and suggests possible gating
mechanisms for opening and closing the channel in response to membrane
stress.
Structure determination. Protein crystals are stabilized by
interactions involving specific amino acids on the protein surface, so
that variations in these surface residues can profoundly influence the
formation of lattice contacts during crystallization. We therefore
adopted the strategy of surveying crystallization space by cloning
(11), expressing, and purifying (12) MscL
homologs derived from nine prokaryotic species, with the expectation
that one or more of these natural variants would be more optimal for
crystal formation. Each of the full-length MscL ion channel constructs
was cloned and recombinantly expressed in a mscL knockout
strain of E. coli (2). Those channels and
conditions that were found more suitable for protein purification and
crystallization were pursued further. After screening and refining
approximately 24,000 crystallization conditions for the nine MscL
homologs, using ~20 detergents, we obtained several different crystal
forms of MscL. The M. tuberculosis homolog yielded crystals
of the best diffraction quality, and these were used for the x-ray
structure determination (13).
Native crystals of Tb-MscL grew in space group I4122
(a = b = 212.96 Å, c = 96.43 Å) and diffracted to a
resolution of ~7 Å using synchrotron radiation. Upon soaking these
crystals in suitable heavy-atom compounds (Table
1), the space group unambiguously changed to I41 with similar unit cell
dimensions (a = b = 212.42 Å, c = 98.05 Å). We believe
that the unsoaked Tb-MscL crystals contained a distribution of
disordered molecules and that the binding of these heavy atoms
stabilized a unique orientation, resulting in the lower symmetry space
group. In an effort to strengthen protein lattice contacts and improve
the overall order within these crystals, an extensive series of
detergents, small organic molecules, and heavy-metal compounds were
screened as additives. One of these compounds,
Na3Au(S2O3)2,
significantly improved the x-ray diffraction quality of the Tb-MscL
crystals, to a limiting resolution of 3.5 Å. This compound was later
found to bind at a set of crystal lattice contacts (Fig.
2A). In view of the superior diffraction
quality, data collected from this soaked crystal was used as the
"native" data set for the structure determination. With diffraction
data collected from several different heavy-metal soaked crystals,
phases were determined by the methods of multiple isomorphous
replacement and anomalous scattering using the package PHASES
(14, 15). Initial electron density maps clearly revealed
that the asymmetric unit contained a single pentamer, corresponding to
a solvent content of ~85%. Iterative fivefold noncrystallographic
averaging, solvent flattening, and phase extension yielded electron
density maps of excellent quality for model building (Fig. 2B). A chemical model was built using the program CHAIN
(16), and the protein sequence registration was
established by the presence of appropriate density in the electron
density maps for the aromatic groups in the transmembrane helices.
Table 1.
Data collection and crystallographic analysis. All
diffraction data used in the structural analysis were collected from
single crystals at beamline 9-1 ( = 0.98 Å) at the Stanford
Synchrotron Radiation Laboratory (SSRL) except for the Xe data set,
which was collected at beamline 7-1 ( = 1.08 Å). Additional data
sets were collected at beamline 5.0.2 at the Advanced Light Source
(ALS) and also on laboratory x-ray sources (RAXIS II and RAXIS
IV). All data sets were collected at -165°C and processed
using the programs MOSFLM and SCALA (39). Because of their
extremely fragile nature, the Tb-MscL crystals were stabilized with
glutaraldehyde by vapor diffusing the crystals for at least 48 hours
before heavy-atom soaking and data collection. In addition, the
triethylene glycol concentration in the drop was gently increased to
38% by vapor diffusion for optimal cryo-protection for flash-cooling
in liquid nitrogen or ethane. The incorporation and concentration of
DDM in heavy-atom soaks was critical for maintaining the integrity and
diffraction quality of the crystals.
|
| Diffraction
data |
|
Na3Au(S2O3)2 |
(NH4)2WS4 |
(CH3)3Pb
acetate |
Xe |
|
| Bragg spacing limits
(Å) |
20.0-3.5 |
20.0-3.5 |
20.0-7.0 |
20.0-7.0
|
| Total observations |
66,083 |
27,379 |
6,513 |
9,522 |
| Unique
observations |
24,876 |
11,492 |
2,901 |
4,549
|
| Rsym (%) |
8.9 |
7.8 |
4.9 |
5.0
|
| Completeness (%) |
90 |
90 |
86 |
87 |
|
Fig. 2.
Structure determination of Tb-MscL.
(A) Packing diagram of Tb-MscL channels in the crystal. The
space group is I41 and the unit cell is superimposed onto
the crystal lattice. The yellow and green spheres indicate the
positions of the bound
Na3Au(S2O3)2 and
(NH4)2WS4 compounds, respectively.
The binding of
Na3Au(S2O3)2 to the
crystal packing sites significantly improved the diffraction
resolution from ~7.0 to 3.5 Å. The
(NH4)2WS4 bound within the
cytoplasmic five-helix bundle of the channel. The inset represents the
view from the extracellular side of the channel showing the relative
positioning of the heavy atoms. (B) Stereoview of
experimental electron density for the TM1 and TM2 transmembrane
helices. The NH2-terminal end of the model (residue 10) is
labeled. The density is contoured at 1 and rendered with BOBSCRIPT
and RASTER-3D (42-44).
[View Larger Version of this Image (62K GIF file)]
(continued).
|
| Generation of experimental electron
density |
|
| Phasing power
|
| Na3Au(S2O3)2 |
2.0
|
| (NH4)2WS4 |
2.3 |
| Density
correlation coefficient |
45% |
| Overall figure of
merit |
0.56 |
|
| Refinement statistics |
| Single
model |
| R factor (20-3.5 Å) |
40%
|
| Rfree (20-3.5 Å) (10%) |
42% |
| Nine
models |
| R factor (20-3.5 Å) |
26%
|
| Rfree (20-3.5 Å) (10%) |
35%
|
| Average B factor |
68 Å2
|
|
| Model geometry |
| Bond length deviation |
0.009
Å |
| Bond angle deviation |
1.6° |
|
The Tb-MscL structure refinement was complicated by a rapid decrease in
intensity of the diffraction pattern with resolution, corresponding to
an overall temperature factor of ~100 Å2. Similar
overall temperature factors were reported for the KcsA channel
structure (10). The experimentally phased electron density
maps, however, appeared to be of much better quality than would be
expected for this temperature factor. This suggested that there was one
predominant orientation for the channel in the crystal, likely
stabilized by heavy-atom binding, with additional orientations that
introduced a degree of positional disorder in the crystal. As a
consequence, while the diffraction pattern remained relatively strong
at lower resolution, the scattering contributions from this ensemble of
protein and associated detergent interfered at higher resolution,
resulting in a rapid decrease in intensities. Standard refinement
algorithms are relatively poor at modeling positional disorder of this
type (17) and, as a result, we were unable to refine
any single model of Tb-MscL to values of R and
Rfree below ~40 and ~42%, respectively. In
an effort to model multiple orientations, we simultaneously refined
nine copies of the structure against the native data
(18-20) with very strict fivefold
noncrystallographic harmonic constraints applied between monomers
within a channel, using the program X-PLOR (21, 22). After
molecular dynamics refinement, an ensemble of similar models (average
rms deviation between C atoms between models: <1.2 Å)
was achieved with a crystallographic R factor of 26% and an
Rfree of 35% against the native Tb-MscL data.
Residue positions in the helical regions were well-defined in these
models, whereas the loop regions were less well ordered. An averaged
model with good stereochemistry was computed and used for structural
analysis.
Structural organization of Tb-MscL. The pentameric
arrangement observed crystallographically contrasts with earlier studies on Eco-MscL that had suggested a hexameric structure based on
cross-linking experiments (5) and electron microscopy (8), although other studies were inconclusive on this point
(6). Using the cross-linker disuccinimidyl suberate (DSS), we observed that cross-linked Tb-MscL and Eco-MscL proteins could each be separated by gel electrophoresis into a ladder of five
bands, suggesting a pentameric association (Fig.
3). These results indicate that the
organization of Tb-MscL observed in the crystal accurately represents
the oligomeric state of the detergent-extracted protein.
Fig. 3.
Cross-linking analysis of the oligomeric state
of purified MscL protein. Aliquots of Tb-MscL (10 µg) or Eco-MscL (3 µg) purified in 0.1% DDM were subjected to cross-linking with the
homobifunctional, water-insoluble reagent DSS (2 mM final
concentration). Reactions were performed in phosphate-buffered saline
(pH 7.5) for 5 min at 4°C and subsequently quenched with 100 mM Tris
(pH 7.5). The protein samples were resolved using a 4 to 15%
polyacrylamide gel and visualized using Coomassie brilliant blue. For
unknown reasons, monomers of the purified MscL proteins migrate as
double bands on the gel, as reported previously (2, 33).
[View Larger Version of this Image (71K GIF file)]
The crystal structure establishes that Tb-MscL exists as a homopentamer
composed of two domains, designated transmembrane and cytoplasmic. Both
domains share the same fivefold axis relating subunits within the
channel. Tb-MscL is ~85 Å in length, with the transmembrane and
cytoplasmic domains accounting for 50 and 35 Å, respectively (Fig.
4). The diameters of the transmembrane and cytoplasmic domains are ~50 and 18 Å, respectively. The actual membrane-spanning region of Tb-MscL is ~35 Å in length and is primarily composed of hydrophobic residues in the transmembrane helices. As noted in other integral membrane proteins, there is a trend
for aromatic residues to be localized near the membrane-aqueous phase
interface (23, 24). In the case of Tb-MscL, aromatic
residues predominate on the cytoplasmic side of the membrane, including
two residues in TM1 (Phe27 and Phe34) and five
in TM2 (Phe79, Phe80, Phe84,
Tyr87, and Phe88).
Fig. 4.
Structure of the homopentameric
mechanosensitive channel from M. tuberculosis. Side (left)
and top (extracellular; right) views of Tb-MscL were rendered using
BOBSCRIPT and RASTER-3D (42-44). The monomers
within the channel are individually colored. The NH2- and
COOH-terminal ends of the cyan monomer are indicated, and the
dimensions of the channel are shown.
[View Larger Version of this Image (45K GIF file)]
Each subunit of Tb-MscL exhibits a relatively simple folding topology
(Fig. 4). Starting from the NH2-terminus at the cytoplasmic
side, the first transmembrane helix (TM1, residues 15 through 43)
crosses the membrane and creates the bulk of the pore. TM1 is connected
to the second transmembrane helix (TM2, residues 69 through 89) by a
loop (residues 44 through 68) that dips into the pore region. TM2
returns to the cytoplasm along the outside of the channel, and is
followed by a second loop (residues 90 through 101) that connects to
the cytoplasmic helix (residues 102 through 115). In view of the net
negative charge in this region (Fig. 5),
it is possible that the cytoplasmic helix is stabilized in this
structure by the low pH of the crystallization conditions. The
remaining residues at the NH2- and COOH-termini are
presumably disordered. The sequence positions of the two transmembrane helices roughly agree with the predictions of the hydropathy analysis (2, 5). Additionally, the polypeptide fold through the
transmembrane domain is threaded in the opposite direction to that
observed in the KcsA channel (10).
Fig. 5.
(A) Molecular surface rendering of
Tb-MscL viewed from the extracellular side of the membrane. The
electrostatic potential was calculated using the program GRASP
(45) assuming an ionic strength equivalent of 100 mM NaCl
and a dielectric constant of 2 and 80 for protein and solvent,
respectively. The surface coloring varies continuously from blue in
more basic regions to red in more acidic areas. Note that the pore
surface is highly polar and occluded at the cytoplasmic side of the
channel. The deviation of the shading of the electrostatic potential
surface from fivefold symmetry is a consequence of the off-axis
placement of the light source used in this figure. (B)
Cut-away side view of Tb-MscL to reveal the solvent-accessible surface
within the channel. All atoms within a 50° wedge from the fivefold
axis of the structure were removed for this representation. The yellow
bars delineate the region of the hydrophobic surface where the lipid
bilayer is presumed to be. The occluded region of the channel is
indicated by the green arrows.
[View Larger Version of this Image (41K GIF file)]
The helical axes for TM1 and TM2 within each subunit are tilted by
~28° with respect to the molecular fivefold axis, whereas the
cytoplasmic helices are tilted by ~15°. Each TM1 helix contacts four surrounding helices (Fig. 4). These contacts involve the TM1
helices of the two adjacent subunits (crossing angle = -43°)
and two TM2 helices: one within the same subunit (crossing angle = 135°) and the second from an adjacent subunit (crossing angle = 169°) (25). The TM2 helices of neighboring subunits do not
directly contact each other, but rather are separated by ~20 Å. The
most extensive set of interactions in the transmembrane domain occurs
between the TM1 and TM2 helices of adjacent subunits, with a buried
surface area of 2300 Å2. In contrast, the interactions
between TM1 and TM2 helices within a subunit are less extensive and
bury only 800 Å2 between residues 34 through 36 and 77 through 79. The cytoplasmic domain consists of helices packed together
at a crossing angle of ~24° to form a helical bundle that buries
~1700 Å2 between adjacent monomers.
Pore structure. The pore of Tb-MscL appears to be extended
along the fivefold axis through both the membrane and cytoplasmic domains. The radius of the transmembrane pore varies between ~2 to 18 Å and is partially occluded at the cytoplasmic surface (Fig. 5). In
the transmembrane domain, the pore is lined with a series of hydrophilic residues from TM1, which include a series of four threonines (Thr25, Thr28, Thr32,
and Thr35), a lysine (Lys33), and an aspartate
(Asp36). Consequently, the interior surface of the channel
has a distinctly polar character. Intriguingly, the abundance of
threonine residues on this surface is reminiscent of the pore-forming
M2 helix in the nicotinic acetylcholine receptor (26,
27). The hydrophobic residues Ile14 and
Val21 create a constriction near the cytoplasmic surface at
the NH2-terminal end of TM1. In view of the small diameter
(~2 Å) of the channel in this region, it appears likely that the
structure of the channel represents a closed, or nearly closed, state.
The loop region between the TM1 and TM2 helices creates a flap that
forms the extracellular surface of the pore. Residues 58 through 64 are
found deep in the pore of the channel and are less ordered, perhaps
reflecting the flexibility of three glycine residues
(Gly62, Gly63, and Gly64) at the
bottom of the loop near Lys33 of TM1. Another interesting
feature of the pore loop are two isoleucine residues (Ile59
and Ile61) which face two other isoleucine residues
(Ile38 and Ile39) from the TM1 helix and may
play some role in controlling the pore diameter.
Directly below the occluded region of the pore, there is a
cluster of charged residues, including Arg98,
Lys99, Lys100, Glu102, and
Glu104. The binding of oxyanionic heavy atoms from several
different derivatives within this region of the cytoplasmic domain
suggests a possible ligand-binding site, and the accessibility of this region could further imply that this part of the structure could potentially participate in part of the ion conduction pathway. In
particular, a Xe-pressurized crystal (28) shows a tube of
difference electron density along the fivefold axis of the cytoplasmic
bundle (29). The juxtaposition of the transmembrane and
cytoplasmic domains with coincident molecular axes, including the
possible extension of the transmembrane channel through the cytoplasmic
domain, resembles the proposed model for the interaction of the
cytoplasmic NH2-terminal domain and channel regions of the
Shaker K+ channel (30).
Relationship of structure to function. Unlike the cloned
ligand- and voltage-gated ion channels that have been extensively characterized by a combination of electrophysiological and molecular biological techniques, the first mechanosensitive ion channel (Eco-MscL) was cloned relatively recently (2), and thus more
limited information is currently available to relate MscL function to
the structural model. However, mutagenesis studies with Eco-MscL have
resulted in the mapping of several regions involved in the gating and
pressure sensitivity of MscL (31-33). Considering the sequence similarity of Tb-MscL to Eco-MscL, these data
yield significant insights into the domains responsible for MscL
function.
The TM1 helix is one of the mostly highly conserved regions among
MscL proteins, particularly at the NH2-terminal end
(3). Single-site mutagenesis of Eco-MscL along this region
showed that mutations along one face of this helix significantly alter
channel gating (31, 32). Based upon the Tb-MscL model, these
mutations consistently map to residues facing the ion conduction
pathway. Mutants that display a gain-of-function phenotype have the
most profound effects at positions 22, 23, 26, and 30 of Eco-MscL
(equivalent to positions 20, 21, 24, and 28 of Tb-MscL). It is believed
that these mutants result in channels that readily open and thus
inhibit growth due the loss of ions out of the cell (31).
Because studies of the purified Eco-MscL channel reconstituted into
lipid bilayers demonstrated that gating is intrinsic to this protein
(2, 34), some integral structural rearrangement must occur
to coordinate channel opening. Based upon the Tb-MscL structure, it
would appear that the junction of the TM1 helices near the base of the
channel can form a physical hydrophobic barrier or "gate" that
occludes the channel, thereby restricting the permeation of ions
through the pore. More significantly, several of the most severe
gain-of-function mutants map within this hydrophobic apex
(31), which supports the hypothesis that this region acts as
the channel gate. Presumably, upon applying lateral tension to the
membrane, rearrangement of the transmembrane region occurs such that
the TM1 helices are pulled away from each other (Fig.
6), perhaps inserting between TM2 helices at the outer edge of the channel. Adjacent TM2 helices are separated by
~20 Å and, hence, could accommodate a repositioned TM1 helix (diameter of ~10 Å) between them. As a result of this proposed movement of the TM1 helices, the constriction of the central pore would
be relaxed, thus allowing ions to cross the membrane. It has been
reported that the cross-sectional area in the membrane occupied by MscL
increases by ~350 Å2 between the closed and open states
of the channel (4, 35). Although the structure of the open
state of Tb-MscL has yet to be determined, a change of this magnitude
could be achieved upon channel opening by a relatively modest increase in the effective diameter of the transmembrane domain from ~50 to
~51 Å.
Fig. 6.
Proposed model for the mechanosensitive gating
of Tb-MscL. Side (left) and top (extracellular; right) views of the
Tb-MscL channel with arrows indicating the proposed shift in relative
helical position upon application of tension to the membrane. To
provide accessibility to the ion conduction pathway, the position of
the TM1 helices near the cytoplasm would need to shift radially from
the molecular fivefold axis (normal to the membrane). Possible movement
of the TM2 and cytoplasmic helices are also indicated. This figure was
prepared using InsightII molecular modeling system (MSI, San Diego,
CA).
[View Larger Version of this Image (37K GIF file)]
Pentameric organizations have been previously described for the
important class of ligand-gated ion channels that include the nicotinic
acetylcholine (AChR), serotonin (5HT3), GABAA,
and glycine receptors (36). Beyond their common
pentameric organization, the pore architecture of Tb-MscL exhibits
strong similarities to that observed for the AChR (37, 38). In particular, the orientation, helix packing, and tilt angle of the M2
helices that have been proposed as forming the AChR pore correspond to
those observed for the pore helices in Tb-MscL. The pore helices for
both families appear to be lined with polar residues such as threonine
or serine, and hydrophobic residues are present at the constriction in
the pore that may act as the channel gate. The gating mechanism
proposed for AChR involves a reorientation of the M2 helices that
repositions the occluding hydrophobic residue, thereby leading to an
open channel configuration. Although the detailed gating mechanisms
undoubtedly differ between MscL and AChR, it seems quite plausible that
they are both based on rearrangements of the pore helices that
ultimately regulate the channel dimensions.
The structure of Tb-MscL provides a framework for understanding the
transduction of mechanical stress on the lipid bilayer into protein
conformational changes that control ion flux through the cell membrane.
As a member of a family of mechanosensitive channels that are prevalent
in bacteria, the structure of Tb-MscL should serve as a model for
these related MscL channels and may additionally help to address
aspects of the functional mechanism of nonhomologous,
two-transmembrane-helix MS channels found in eukaryotes. Structural
similarities in the pore regions between Tb-MscL and the family of
pentameric ligand-gated ion channels also suggest that this structure
will be useful for modeling gating mechanisms in a broad class of gated
channels. As originally demonstrated with the structure of the
bacterial photosynthetic reaction center (23), and most
recently with the KcsA channel structure (10) and our work
here, bacterial membrane proteins provide attractive systems for
structural and functional characterization of more complex homologs of
integral membrane proteins found in eukaryotes.
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[Abstract/Free Full Text]
.
-
MscL homologs were identified during BLAST searches of
unfinished sequences from various genome sequencing projects including
the following species: Actinobacillus actinomycetemcomitans,
Bordetella pertussis, Chlorobium tepidum,
Deinococcus radiodurans, Enterococcus faecalis,
Mycobacterium leprae, Porphyromonas gingivalis,
Pseudomonas aeruginosa, Streptococcus pyogenes,
Vibrio cholerae, and Yersinia pestis (R. H. Spencer and G. Chang, unpublished material).
-
D. A. Doyle,
et al.,
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[Abstract/Free Full Text]
.
-
We identified the Tb-MscL homolog based upon a National Center
for Biotechnology Information BLAST search of the M. tuberculosis genome project and isolated the coding region from
genomic DNA (kind gift from S. Gordon, Institut Pasteur, Paris, France)
using polymerase chain reaction-based techniques. The respective
mscL genes from E. coli, Synechocystis
sp., Haemophilus influenzae, and Bacillus
subtilis were also cloned from genomic DNA. Plasmid clones
containing the mscL genes from E. carotovora, P. fluorescens, and
Staphylococcus aureus were obtained as a gift from C. Kung
and P. C. Moe, University of Wisconsin-Madison, Madison, WI, and
mscL from Clostridium perfringens was obtained as
a gift from A. Okabe, Kagawa Medical School, Kagawa, Japan.
-
All MscL homologs were cloned into the pET19b vector (Novagen,
Madison, WI) which added 23 residues at the NH2-terminus of
MscL including a decahistidine repeat and a consensus enterokinase
cleavage site. Additionally, protein was expressed in E. coli using a mscL knockout mutant (lysogenized with
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We thank A. Chirino for advice and computer support, J. G. Spencer for technical assistance, S. Gordon of the Institut
Pasteur (Paris, France) for his kind gift of genomic DNA from M. tuberculosis, C. Kung and P. C. Moe from the University
of Wisconsin-Madison for several cloned mscL homologs and
for the E. coli knockout mutant for mscL, A. Okabe of the Kagawa Medical School (Kagawa, Japan) for providing cloned
DNA of mscL from C. perfringens, and D. Dougherty
and H. Lester for helpful discussions. We also thank the staff at the
Stanford Synchrotron Radiation Laboratory (SSRL) and the Advanced Light
Source (ALS) for their help in data collection. The synchrotron
rotation camera facilities are supported by the U.S. Department of
Energy (ALS and SSRL) and NIH (SSRL). G.C. and R.H.S. were supported by
NIH postdoctoral fellowship grant GM18486 and an Amgen postdoctoral
fellowship, respectively, during the initial stages of this project.
Supported by the Howard Hughes Medical Institute. Protein Data Bank
identifier for Tb-MscL is 1MSL.
29 October 1998; accepted 16 November
1998
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Mol. Cell. Proteomics
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Science
298, 1582-1587
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FASEB J
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Physiol Rev
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277, 34443-34450
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J. Physiol.
542, 817-828
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277, 27682-27688
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Br. J. Anaesth.
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Protein Eng. Des. Sel.
15, 443-453
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Science
296, 1091-1098
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PNAS
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PNAS
99, 5643-5648
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Physiol Rev
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PNAS
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Am J Physiol Lung Cell Mol Physiol
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285, 73-78
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FASEB J
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275, 22238-22244
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- Gramicidin A channels switch between stretch activation and stretch inactivation depending on bilayer thickness.
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PNAS
99, 4308-4312
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PNAS
99, 5999-6004
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