Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Originally published in Science Express on 11 December 2003
Science 30 January 2004:
Vol. 303. no. 5658, pp. 644 - 649
DOI: 10.1126/science.1092727

Research Articles

Epigenetic Dynamics of Imprinted X Inactivation During Early Mouse Development

Ikuhiro Okamoto,1 Arie P. Otte,2 C. David Allis,3 Danny Reinberg,4 Edith Heard1*

The initiation of X-chromosome inactivation is thought to be tightly correlated with early differentiation events during mouse development. Here, we show that although initially active, the paternal X chromosome undergoes imprinted inactivation from the cleavage stages, well before cellular differentiation. A reversal of the inactive state, with a loss of epigenetic marks such as histone modifications and polycomb proteins, subsequently occurs in cells of the inner cell mass (ICM), which give rise to the embryo-proper in which random X inactivation is known to occur. This reveals the remarkable plasticity of the X-inactivation process during preimplantation development and underlines the importance of the ICM in global reprogramming of epigenetic marks in the early embryo.

1 CNRS UMR218, Curie Institute, 26 rue d'Ulm, Paris 75005, France.
2 Swammerdam Institute for Life Sciences, BioCentrum Amsterdam, University of Amsterdam, 1018 TV Amsterdam, Netherlands.
3 Rockefeller University, Box 78, 1230 York Avenue, New York, NY 10021, USA.
4 Department of Biochemistry, Division of Nucleic Acids Enzymology, Howard Hughes Medical Institute, University of Medicine and Dentistry of New Jersey, Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA.

* To whom correspondence should be addressed. E-mail: edith.heard{at}curie.fr

Read the Full Text



THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Requirement for balanced Ca/NFAT signaling in hematopoietic and embryonic development.
M. R. Muller, Y. Sasaki, I. Stevanovic, E. D. Lamperti, S. Ghosh, S. Sharma, C. Gelinas, D. J. Rossi, M. E. Pipkin, K. Rajewsky, et al. (2009)
PNAS 106, 7034-7039
   Abstract »    Full Text »    PDF »
Dynamic changes in paternal X-chromosome activity during imprinted X-chromosome inactivation in mice.
C. Patrat, I. Okamoto, P. Diabangouaya, V. Vialon, P. Le Baccon, J. Chow, and E. Heard (2009)
PNAS 106, 5198-5203
   Abstract »    Full Text »    PDF »
The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing.
L. Redrup, M. R. Branco, E. R. Perdeaux, C. Krueger, A. Lewis, F. Santos, T. Nagano, B. S. Cobb, P. Fraser, and W. Reik (2009)
Development 136, 525-530
   Abstract »    Full Text »    PDF »
A new model for random X chromosome inactivation.
J. Starmer and T. Magnuson (2009)
Development 136, 1-10
   Abstract »    Full Text »    PDF »
A proximal conserved repeat in the Xist gene is essential as a genomic element for X-inactivation in mouse.
Y. Hoki, N. Kimura, M. Kanbayashi, Y. Amakawa, T. Ohhata, H. Sasaki, and T. Sado (2009)
Development 136, 139-146
   Abstract »    Full Text »    PDF »
Polycomb gene expression and histone H3 lysine 27 trimethylation changes during bovine preimplantation development.
P. J Ross, N. P Ragina, R. M Rodriguez, A. E Iager, K. Siripattarapravat, N. Lopez-Corrales, and J. B Cibelli (2008)
Reproduction 136, 777-785
   Abstract »    Full Text »    PDF »
Germ Line, Stem Cells, and Epigenetic Reprogramming.
M.A. Surani, G. Durcova-Hills, P. Hajkova, K. Hayashi, and W.W. Tee (2008)
Cold Spring Harb Symp Quant Biol
   Abstract »    PDF »
Molecular Coupling of Xist Regulation and Pluripotency.
P. Navarro, I. Chambers, V. Karwacki-Neisius, C. Chureau, C. Morey, C. Rougeulle, and P. Avner (2008)
Science 321, 1693-1695
   Abstract »    Full Text »    PDF »
Cell identity in the preimplantation mammalian embryo: an epigenetic perspective from the mouse.
M. E. Torres-Padilla (2008)
Hum. Reprod. 23, 1246-1252
   Abstract »    Full Text »    PDF »
Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease.
P. A.C. Cloos, J. Christensen, K. Agger, and K. Helin (2008)
Genes & Dev. 22, 1115-1140
   Abstract »    Full Text »    PDF »
Ezh2 Requires PHF1 To Efficiently Catalyze H3 Lysine 27 Trimethylation In Vivo.
K. Sarma, R. Margueron, A. Ivanov, V. Pirrotta, and D. Reinberg (2008)
Mol. Cell. Biol. 28, 2718-2731
   Abstract »    Full Text »    PDF »
X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations.
Y. Shen, Y. Matsuno, S. D. Fouse, N. Rao, S. Root, R. Xu, M. Pellegrini, A. D. Riggs, and G. Fan (2008)
PNAS 105, 4709-4714
   Abstract »    Full Text »    PDF »
Epigenetic differences between male and female bovine blastocysts produced in vitro.
P. Bermejo-Alvarez, D. Rizos, D. Rath, P. Lonergan, and A. Gutierrez-Adan (2008)
Physiol Genomics 32, 264-272
   Abstract »    Full Text »    PDF »
Gender-dependent physiological implications of combined PAI-1 and TIMP-1 gene deficiency characterized in a mouse model.
J. Harslund, O. L. Nielsen, N. Brunner, and H. Offenberg (2007)
Am J Physiol Regulatory Integrative Comp Physiol 293, R1630-R1639
   Abstract »    Full Text »    PDF »
X-linked clonality testing: interpretation and limitations.
G. L. Chen and J. T. Prchal (2007)
Blood 110, 1411-1419
   Abstract »    Full Text »    PDF »
RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena.
Y. Liu, S. D. Taverna, T. L. Muratore, J. Shabanowitz, D. F. Hunt, and C. D. Allis (2007)
Genes & Dev. 21, 1530-1545
   Abstract »    Full Text »    PDF »
Sex-Specific Viability, Sex Linkage and Dominance in Genomic Imprinting.
J. Van Cleve and M. W. Feldman (2007)
Genetics 176, 1101-1118
   Abstract »    Full Text »    PDF »
The Polycomb Group Protein Suz12 Is Required for Embryonic Stem Cell Differentiation.
D. Pasini, A. P. Bracken, J. B. Hansen, M. Capillo, and K. Helin (2007)
Mol. Cell. Biol. 27, 3769-3779
   Abstract »    Full Text »    PDF »
Meiotic sex chromosome inactivation.
J. M. A. Turner (2007)
Development 134, 1823-1831
   Abstract »    Full Text »    PDF »
Epigenetic regulation of facultative heterochromatinisation in Planococcus citri via the Me(3)K9H3-HP1-Me(3)K20H4 pathway.
S. Bongiorni, B. Pasqualini, M. Taranta, P. B. Singh, and G. Prantera (2007)
J. Cell Sci. 120, 1072-1080
   Abstract »    Full Text »    PDF »
Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum.
K. V. Prasanth and D. L. Spector (2007)
Genes & Dev. 21, 11-42
   Abstract »    Full Text »    PDF »
Tsix defective in splicing is competent to establish Xist silencing.
T. Sado, Y. Hoki, and H. Sasaki (2006)
Development 133, 4925-4931
   Abstract »    Full Text »    PDF »
Reprogramming somatic cells into stem cells..
R. Alberio, K. H Campbell, and A. D Johnson (2006)
Reproduction 132, 709-720
   Abstract »    Full Text »    PDF »
Epigenetic dynamics of the Kcnq1 imprinted domain in the early embryo.
A. Lewis, K. Green, C. Dawson, L. Redrup, K. D. Huynh, J. T. Lee, M. Hemberger, and W. Reik (2006)
Development 133, 4203-4210
   Abstract »    Full Text »    PDF »
Hematopoietic precursor cells transiently reestablish permissiveness for x inactivation..
F. Savarese, K. Flahndorfer, R. Jaenisch, M. Busslinger, and A. Wutz (2006)
Mol. Cell. Biol. 26, 7167-7177
   Abstract »    Full Text »    PDF »
A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced..
J. Chaumeil, P. Le Baccon, A. Wutz, and E. Heard (2006)
Genes & Dev. 20, 2223-2237
   Abstract »    Full Text »    PDF »
Dosage compensation in mammals: fine-tuning the expression of the X chromosome.
E. Heard and C. M. Disteche (2006)
Genes & Dev. 20, 1848-1867
   Abstract »    Full Text »    PDF »
Partitioning of the Maize Epigenome by the Number of Methyl Groups on Histone H3 Lysines 9 and 27.
J. Shi and R. K. Dawe (2006)
Genetics 173, 1571-1583
   Abstract »    Full Text »    PDF »
The X chromosome is organized into a gene-rich outer rim and an internal core containing silenced nongenic sequences.
C. M. Clemson, L. L. Hall, M. Byron, J. McNeil, and J. B. Lawrence (2006)
PNAS 103, 7688-7693
   Abstract »    Full Text »    PDF »
Release of Hypoacetylated and Trimethylated Histone H4 Is an Epigenetic Marker of Early Apoptosis.
M. Boix-Chornet, M. F. Fraga, A. Villar-Garea, R. Caballero, J. Espada, A. Nunez, J. Casado, C. Largo, J. I. Casal, J. C. Cigudosa, et al. (2006)
J. Biol. Chem. 281, 13540-13547
   Abstract »    Full Text »    PDF »
An essential role for the DXPas34 tandem repeat and Tsix transcription in the counting process of X chromosome inactivation.
S. Vigneau, S. Augui, P. Navarro, P. Avner, and P. Clerc (2006)
PNAS 103, 7390-7395
   Abstract »    Full Text »    PDF »
RNA and Protein Actors in X-Chromosome Inactivation.
O. MASUI and E. HEARD (2006)
Cold Spring Harb Symp Quant Biol 71, 419-428
   Abstract »    PDF »
Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse.
P. J. Wang, D. C. Page, and J. R. McCarrey (2005)
Hum. Mol. Genet. 14, 2911-2918
   Abstract »    Full Text »    PDF »
X-Inactivation Status Varies in Human Embryonic Stem Cell Lines.
L. M. Hoffman, L. Hall, J. L. Batten, H. Young, D. Pardasani, E. E. Baetge, J. Lawrence, and M. K. Carpenter (2005)
Stem Cells 23, 1468-1478
   Abstract »    Full Text »    PDF »
Arginine Methylation Provides Epigenetic Transcription Memory for Retinoid-Induced Differentiation in Myeloid Cells.
B. L. Balint, A. Szanto, A. Madi, U.-M. Bauer, P. Gabor, S. Benko, L. G. Puskas, P. J. A. Davies, and L. Nagy (2005)
Mol. Cell. Biol. 25, 5648-5663
   Abstract »    Full Text »    PDF »
Tsix transcription across the Xist gene alters chromatin conformation without affecting Xist transcription: implications for X-chromosome inactivation.
P. Navarro, S. Pichard, C. Ciaudo, P. Avner, and C. Rougeulle (2005)
Genes & Dev. 19, 1474-1484
   Abstract »    Full Text »    PDF »
Mapping Global Histone Methylation Patterns in the Coding Regions of Human Genes.
F. Miao and R. Natarajan (2005)
Mol. Cell. Biol. 25, 4650-4661
   Abstract »    Full Text »    PDF »
From the Cover: Stable X chromosome inactivation involves the PRC1 Polycomb complex and requires histone MACROH2A1 and the CULLIN3/SPOP ubiquitin E3 ligase.
I. Hernandez-Munoz, A. H. Lund, P. van der Stoop, E. Boutsma, I. Muijrers, E. Verhoeven, D. A. Nusinow, B. Panning, Y. Marahrens, and M. van Lohuizen (2005)
PNAS 102, 7635-7640
   Abstract »    Full Text »    PDF »
Epigenetic reprogramming in mammals.
H. D. Morgan, F. Santos, K. Green, W. Dean, and W. Reik (2005)
Hum. Mol. Genet. 14, R47-R58
   Abstract »    Full Text »    PDF »
Imprinted X inactivation and reprogramming in the preimplantation mouse embryo.
T. Sado and A. C. Ferguson-Smith (2005)
Hum. Mol. Genet. 14, R59-R64
   Abstract »    Full Text »    PDF »
The influence of non-coding RNAs on allele-specific gene expression in mammals.
M. J. O'Neill (2005)
Hum. Mol. Genet. 14, R113-R120
   Abstract »    Full Text »    PDF »
Imprinted X-inactivation in extra-embryonic endoderm cell lines from mouse blastocysts.
T. Kunath, D. Arnaud, G. D. Uy, I. Okamoto, C. Chureau, Y. Yamanaka, E. Heard, R. L. Gardner, P. Avner, and J. Rossant (2005)
Development 132, 1649-1661
   Abstract »    Full Text »    PDF »
Silencing of Unpaired Chromatin and Histone H2A Ubiquitination in Mammalian Meiosis.
W. M. Baarends, E. Wassenaar, R. van der Laan, J. Hoogerbrugge, E. Sleddens-Linkels, J. H. J. Hoeijmakers, P. de Boer, and J. A. Grootegoed (2005)
Mol. Cell. Biol. 25, 1041-1053
   Abstract »    Full Text »    PDF »
Growth rate of human preimplantation embryos is sex dependent after ICSI but not after IVF.
J. C.M. Dumoulin, J. G. Derhaag, M. Bras, A. P.A. Van Montfoort, A. D.M. Kester, J. L.H. Evers, J. P.M. Geraedts, and E. Coonen (2005)
Hum. Reprod. 20, 484-491
   Abstract »    Full Text »    PDF »
Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications.
L. Johnson, S. Mollah, B. A. Garcia, T. L. Muratore, J. Shabanowitz, D. F. Hunt, and S. E. Jacobsen (2004)
Nucleic Acids Res. 32, 6511-6518
   Abstract »    Full Text »    PDF »
Dynamic histone modifications mark sex chromosome inactivation and reactivation during mammalian spermatogenesis.
A. M. Khalil, F. Z. Boyar, and D. J. Driscoll (2004)
PNAS 101, 16583-16587
   Abstract »    Full Text »    PDF »
Somatic mosaicism in patients with Angelman syndrome and an imprinting defect.
H. Nazlican, M. Zeschnigk, U. Claussen, S. Michel, S. Boehringer, G. Gillessen-Kaesbach, K. Buiting, and B. Horsthemke (2004)
Hum. Mol. Genet. 13, 2547-2555
   Abstract »    Full Text »    PDF »
Epigenetics and cancer.
A. H. Lund and M. van Lohuizen (2004)
Genes & Dev. 18, 2315-2335
   Abstract »    Full Text »    PDF »
Does Random X-Inactivation in Mammals Reflect a Random Choice Between Two X Chromosomes?.
B. R. Williams and C.-t. Wu (2004)
Genetics 167, 1525-1528
   Abstract »    Full Text »    PDF »
Differential Histone H3 Lys-9 and Lys-27 Methylation Profiles on the X Chromosome.
C. Rougeulle, J. Chaumeil, K. Sarma, C. D. Allis, D. Reinberg, P. Avner, and E. Heard (2004)
Mol. Cell. Biol. 24, 5475-5484
   Abstract »    Full Text »    PDF »
A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin.
G. Schotta, M. Lachner, K. Sarma, A. Ebert, R. Sengupta, G. Reuter, D. Reinberg, and T. Jenuwein (2004)
Genes & Dev. 18, 1251-1262
   Abstract »    Full Text »    PDF »
Chromosome Loops, Insulators, and Histone Methylation: New Insights into Regulation of Imprinting in Clusters.
W. REIK, A. MURRELL, A. LEWIS, K. MITSUYA, D. UMLAUF, W. DEAN, M. HIGGINS, and R. FEIL (2004)
Cold Spring Harb Symp Quant Biol 69, 29-38
   Abstract »    PDF »
Mammalian X-Chromosome Inactivation: An Epigenetics Paradigm.
E. HEARD, J. CHAUMEIL, O. MASUI, and I. OKAMOTO (2004)
Cold Spring Harb Symp Quant Biol 69, 89-102
   Abstract »    PDF »
A Continuity of X-Chromosome Silence from Gamete to Zygote.
K.D. HUYNH and J.T. LEE (2004)
Cold Spring Harb Symp Quant Biol 69, 103-112
   Abstract »    PDF »
Role of De Novo DNA Methyltransferases in Initiation of Genomic Imprinting and X-Chromosome Inactivation.
M. KANEDA, T. SADO, K. HATA, M. OKANO, N. TSUJIMOTO, E. LI, and H. SASAKI (2004)
Cold Spring Harb Symp Quant Biol 69, 125-130
   Abstract »    PDF »
Linking Covalent Histone Modifications to Epigenetics: The Rigidity and Plasticity of the Marks.
Y. WANG, J. WYSOCKA, J.R. PERLIN, L. LEONELLI, C.D. ALLIS, and S.A. COONROD (2004)
Cold Spring Harb Symp Quant Biol 69, 161-170
   Abstract »    PDF »
Trilogies of Histone Lysine Methylation as Epigenetic Landmarks of the Eukaryotic Genome.
M. LACHNER, R. SENGUPTA, G. SCHOTTA, and T. JENUWEIN (2004)
Cold Spring Harb Symp Quant Biol 69, 209-218
   Abstract »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)