Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Science Signaling - Call for Papers

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 13 June 2003:
Vol. 300. no. 5626, pp. 1706 - 1707
DOI: 10.1126/science.1086292
Prev | Table of Contents | Next

Viewpoint

Phylogenomics: Intersection of Evolution and Genomics

Jonathan A. Eisen* and Claire M. Fraser

Much has been gained from genomic and evolutionary studies of species. Combining the perspectives of these different approaches suggests that an integrated phylogenomic approach will be beneficial.

The Institute for Genomic Research, Rockville, MD 20850, USA.

* To whom correspondence should be addressed. E-mail: jeisen{at}tigr.org

Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Phylogenetic Analysis of the Incidence of lux Gene Horizontal Transfer in Vibrionaceae.
H. Urbanczyk, J. C. Ast, A. J. Kaeding, J. D. Oliver, and P. V. Dunlap (2008)
J. Bacteriol. 190, 3494-3504
   Abstract »    Full Text »    PDF »
Bayesian reconstruction of ancestral expression of the LEA gene families reveals propagule-derived desiccation tolerance in resurrection plants.
K. M. Fisher (2008)
Am. J. Botany 95, 506-515
   Abstract »    Full Text »    PDF »
Integrating Markov Clustering and Molecular Phylogenetics to Reconstruct the Cyanobacterial Species Tree from Conserved Protein Families.
W. D. Swingley, R. E. Blankenship, and J. Raymond (2008)
Mol. Biol. Evol. 25, 643-654
   Abstract »    Full Text »    PDF »
GreenPhylDB: a database for plant comparative genomics.
M. G. Conte, S. Gaillard, N. Lanau, M. Rouard, and C. Perin (2008)
Nucleic Acids Res. 36, D991-D998
   Abstract »    Full Text »    PDF »
Identification and Characterization of Lineage-Specific Genes within the Poaceae.
M. A. Campbell, W. Zhu, N. Jiang, H. Lin, S. Ouyang, K. L. Childs, B. J. Haas, J. P. Hamilton, and C. R. Buell (2007)
Plant Physiology 145, 1311-1322
   Abstract »    Full Text »    PDF »
Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.
X. Gu and Z. Su (2007)
PNAS 104, 2779-2784
   Abstract »    Full Text »    PDF »
Functional Classification of Amino Acid Decarboxylases from the Alanine Racemase Structural Family by Phylogenetic Studies.
H. Kidron, S. Repo, M. S. Johnson, and T. A. Salminen (2007)
Mol. Biol. Evol. 24, 79-89
   Abstract »    Full Text »    PDF »
Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects.
J. Savard, D. Tautz, S. Richards, G. M. Weinstock, R. A. Gibbs, J. H. Werren, H. Tettelin, and M. J. Lercher (2006)
Genome Res. 16, 1334-1338
   Abstract »    Full Text »    PDF »
Evolution of sensory complexity recorded in a myxobacterial genome.
B. S. Goldman, W. C. Nierman, D. Kaiser, S. C. Slater, A. S. Durkin, J. A. Eisen, C. M. Ronning, W. B. Barbazuk, M. Blanchard, C. Field, et al. (2006)
PNAS 103, 15200-15205
   Abstract »    Full Text »    PDF »
A Simple Statistical Method for Estimating Type-II (Cluster-Specific) Functional Divergence of Protein Sequences.
X. Gu (2006)
Mol. Biol. Evol. 23, 1937-1945
   Abstract »    Full Text »    PDF »
The Cryptococcus neoformans Catalase Gene Family and Its Role in Antioxidant Defense..
S. S. Giles, J. E. Stajich, C. Nichols, Q. D. Gerrald, J. A. Alspaugh, F. Dietrich, and J. R. Perfect (2006)
Eukaryot. Cell 5, 1447-1459
   Abstract »    Full Text »    PDF »
The Rieske Protein: A Case Study on the Pitfalls of Multiple Sequence Alignments and Phylogenetic Reconstruction.
E. Lebrun, J. M. Santini, M. Brugna, A.-L. Ducluzeau, S. Ouchane, B. Schoepp-Cothenet, F. Baymann, and W. Nitschke (2006)
Mol. Biol. Evol. 23, 1180-1191
   Abstract »    Full Text »    PDF »
Evolution at the nucleotide level: the problem of multiple whole-genome alignment..
C. N. Dewey and L. Pachter (2006)
Hum. Mol. Genet. 15, R51-R56
   Abstract »    Full Text »    PDF »
Phylogenomic Analysis Identifies Red Algal Genes of Endosymbiotic Origin in the Chromalveolates.
S. Li, T. Nosenko, J. D. Hackett, and D. Bhattacharya (2006)
Mol. Biol. Evol. 23, 663-674
   Abstract »    Full Text »    PDF »
TFAM detects co-evolution of tRNA identity rules with lateral transfer of histidyl-tRNA synthetase.
D. H. Ardell and S. G. E. Andersson (2006)
Nucleic Acids Res. 34, 893-904
   Abstract »    Full Text »    PDF »
Evolutionary relationships among Pinus (Pinaceae) subsections inferred from multiple low-copy nuclear loci.
J. Syring, A. Willyard, R. Cronn, and A. Liston (2005)
Am. J. Botany 92, 2086-2100
   Abstract »    Full Text »    PDF »
Orphans as taxonomically restricted and ecologically important genes.
G. A. Wilson, N. Bertrand, Y. Patel, J. B. Hughes, E. J. Feil, and D. Field (2005)
Microbiology 151, 2499-2501
   Full Text »    PDF »
New keys to the Past: Current and future DNA studies in Coccolithophores.
C. de Vargas and I. Probert (2004)
Micropaleontology 50, 45-54
   Abstract »    Full Text »    PDF »
A Phylogenomic Study of Endosymbiotic Bacteria.
B. Canback, I. Tamas, and S. G. E. Andersson (2004)
Mol. Biol. Evol. 21, 1110-1122
   Abstract »    Full Text »    PDF »
PCR-based positive hybridization to detect genomic diversity associated with bacterial secondary metabolism.
F. Pomati and B. A. Neilan (2004)
Nucleic Acids Res. 32, e7
   Abstract »    Full Text »    PDF »


ADVERTISEMENT
Click Me!

ADVERTISEMENT
Click Me!

To Advertise     Find Products