Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Science 15 September 2006:
Vol. 313. no. 5793, pp. 1638 - 1642
DOI: 10.1126/science.1130258

Reports

The Dynamic Energy Landscape of Dihydrofolate Reductase Catalysis

David D. Boehr, Dan McElheny,* H. Jane Dyson, Peter E. Wright{dagger}

We used nuclear magnetic resonance relaxation dispersion to characterize higher energy conformational substates of Escherichia coli dihydrofolate reductase. Each intermediate in the catalytic cycle samples low-lying excited states whose conformations resemble the ground-state structures of preceding and following intermediates. Substrate and cofactor exchange occurs through these excited substates. The maximum hydride transfer and steady-state turnover rates are governed by the dynamics of transitions between ground and excited states of the intermediates. Thus, the modulation of the energy landscape by the bound ligands funnels the enzyme through its reaction cycle along a preferred kinetic path.

Department of Molecular Biology and Skaggs Institute for Chemical Biology, Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

* Present address: Division of Biological Sciences, University of Chicago, Chicago, IL 60637, USA.

{dagger} To whom correspondence should be addressed. E-mail: wright{at}scripps.edu

Read the Full Text



THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin.
T. Wlodarski and B. Zagrovic (2009)
PNAS 106, 19346-19351
   Abstract »    Full Text »    PDF »
Enzyme millisecond conformational dynamics do not catalyze the chemical step.
A. V. Pisliakov, J. Cao, S. C. L. Kamerlin, and A. Warshel (2009)
PNAS 106, 17359-17364
   Abstract »    Full Text »    PDF »
Conformational selection or induced fit: A flux description of reaction mechanism.
G. G. Hammes, Y.-C. Chang, and T. G. Oas (2009)
PNAS 106, 13737-13741
   Abstract »    Full Text »    PDF »
Cryogenic and Laser Photoexcitation Studies Identify Multiple Roles for Active Site Residues in the Light-driven Enzyme Protochlorophyllide Oxidoreductase.
B. R. K. Menon, J. P. Waltho, N. S. Scrutton, and D. J. Heyes (2009)
J. Biol. Chem. 284, 18160-18166
   Abstract »    Full Text »    PDF »
Nuclear Quantum Tunneling in the Light-activated Enzyme Protochlorophyllide Oxidoreductase.
D. J. Heyes, M. Sakuma, S. P. de Visser, and N. S. Scrutton (2009)
J. Biol. Chem. 284, 3762-3767
   Abstract »    Full Text »    PDF »
How Do Enzymes Really Work?.
G. G. Hammes (2008)
J. Biol. Chem. 283, 22337-22346
   Full Text »    PDF »
Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution.
O. F. Lange, N.-A. Lakomek, C. Fares, G. F. Schroder, K. F. A. Walter, S. Becker, J. Meiler, H. Grubmuller, C. Griesinger, and B. L. de Groot (2008)
Science 320, 1471-1475
   Abstract »    Full Text »    PDF »
Differential Substrate Specificity and Kinetic Behavior of Escherichia coli YfdW and Oxalobacter formigenes Formyl Coenzyme A Transferase.
C. G. Toyota, C. L. Berthold, A. Gruez, S. Jonsson, Y. Lindqvist, C. Cambillau, and N. G. J. Richards (2008)
J. Bacteriol. 190, 2556-2564
   Abstract »    Full Text »    PDF »
Vertebrate Membrane Proteins: Structure, Function, and Insights from Biophysical Approaches.
D. J. Muller, N. Wu, and K. Palczewski (2008)
Pharmacol. Rev. 60, 43-78
   Abstract »    Full Text »    PDF »
Structural identification of the pathway of long-range communication in an allosteric enzyme.
P. S. Gandhi, Z. Chen, F. S. Mathews, and E. Di Cera (2008)
PNAS 105, 1832-1837
   Abstract »    Full Text »    PDF »
Allosteric cooperativity in protein kinase A.
L. R. Masterson, A. Mascioni, N. J. Traaseth, S. S. Taylor, and G. Veglia (2008)
PNAS 105, 506-511
   Abstract »    Full Text »    PDF »
Measurement of bond vector orientations in invisible excited states of proteins.
P. Vallurupalli, D. F. Hansen, E. Stollar, E. Meirovitch, and L. E. Kay (2007)
PNAS 104, 18473-18477
   Abstract »    Full Text »    PDF »
Principal component analysis of the pH-dependent conformational transitions of bovine beta-lactoglobulin monitored by heteronuclear NMR.
K. Sakurai and Y. Goto (2007)
PNAS 104, 15346-15351
   Abstract »    Full Text »    PDF »
The mechanism of rate-limiting motions in enzyme function.
E. D. Watt, H. Shimada, E. L. Kovrigin, and J. P. Loria (2007)
PNAS 104, 11981-11986
   Abstract »    Full Text »    PDF »
MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape.
J. Franklin, P. Koehl, S. Doniach, and M. Delarue (2007)
Nucleic Acids Res. 35, W477-W482
   Abstract »    Full Text »    PDF »
Dissection of complex protein dynamics in human thioredoxin.
W. Qiu, L. Wang, W. Lu, A. Boechler, D. A. R. Sanders, and D. Zhong (2007)
PNAS 104, 5366-5371
   Abstract »    Full Text »    PDF »
Intramolecular domain-domain association/dissociation and phosphoryl transfer in the mannitol transporter of Escherichia coli are not coupled.
J.-Y. Suh, J. Iwahara, and G. M. Clore (2007)
PNAS 104, 3153-3158
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)