Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
The crystal structures of the ribosome and its subunits haveincreased the amount of information about RNA structure by abouttwo orders of magnitude. This is leading to an understandingof the principles of RNA folding and of the molecular interactionsthat underlie the functional capabilities of the ribosome andother RNA systems. Nearly all of the possible types of RNA tertiaryinteractions have been found in ribosomal RNA. One of these,an abundant tertiary structural motif called the A-minor interaction,has been shown to participate in both aminoacyl-transfer RNAselection and in peptidyl transferase; it may also play an importantrole in the structural dynamics of the ribosome.
Center for Molecular Biology of RNA, Department of Molecular, Cell, and Developmental Biology, Sinsheimer Laboratories, University of California, Santa Cruz, Santa Cruz, CA 95064, USA.
The editors suggest the following Related Resources on Science sites:
In Science Magazine
INTRODUCTION TO SPECIAL ISSUE
Guy Riddihough (2 September 2005) Science309 (5740), 1507.
[DOI: 10.1126/science.309.5740.1507] |Summary »|PDF »
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
'RNA walk' a novel approach to study RNA-RNA interactions between a small RNA and its target.
Y. Lustig, C. Wachtel, M. Safro, L. Liu, and S. Michaeli (2009)
Nucleic Acids Res.
|Abstract »|Full Text »|PDF »
The UA_handle: a versatile submotif in stable RNA architectures.
L. Jaeger, E. J. Verzemnieks, and C. Geary (2009)
Nucleic Acids Res.
37, 215-230
|Abstract »|Full Text »|PDF »
Mutations in Conserved Helix 69 of 23S rRNA of Thermus thermophilus That Affect Capreomycin Resistance but Not Posttranscriptional Modifications.
T. Monshupanee, S. T. Gregory, S. Douthwaite, W. Chungjatupornchai, and A. E. Dahlberg (2008)
J. Bacteriol.
190, 7754-7761
|Abstract »|Full Text »|PDF »
YbeA is the m3{Psi} methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA.
E. Purta, K. H. Kaminska, J. M. Kasprzak, J. M. Bujnicki, and S. Douthwaite (2008)
RNA
14, 2234-2244
|Abstract »|Full Text »|PDF »
The sarcin-ricin loop of 23S rRNA is essential for assembly of the functional core of the 50S ribosomal subunit.
L. Lancaster, N. J. Lambert, E. J. Maklan, L. H. Horan, and H. F. Noller (2008)
RNA
14, 1999-2012
|Abstract »|Full Text »|PDF »
Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors.
C. Geary, S. Baudrey, and L. Jaeger (2008)
Nucleic Acids Res.
36, 1138-1152
|Abstract »|Full Text »|PDF »
Structural inference of native and partially folded RNA by high-throughput contact mapping.
R. Das, M. Kudaravalli, M. Jonikas, A. Laederach, R. Fong, J. P. Schwans, D. Baker, J. A. Piccirilli, R. B. Altman, and D. Herschlag (2008)
PNAS
105, 4144-4149
|Abstract »|Full Text »|PDF »
RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.
M. Popenda, M. Blazewicz, M. Szachniuk, and R. W. Adamiak (2008)
Nucleic Acids Res.
36, D386-D391
|Abstract »|Full Text »|PDF »
A Genomic Map of Viroid RNA Motifs Critical for Replication and Systemic Trafficking.
X. Zhong, A. J. Archual, A. A. Amin, and B. Ding (2008)
PLANT CELL
20, 35-47
|Abstract »|Full Text »|PDF »
Inaugural Article: The process of mRNA-tRNA translocation.
J. Frank, H. Gao, J. Sengupta, N. Gao, and D. J. Taylor (2007)
PNAS
104, 19671-19678
|Abstract »|Full Text »|PDF »
Roles of the negatively charged N-terminal extension of Saccharomyces cerevisiae ribosomal protein S5 revealed by characterization of a yeast strain containing human ribosomal protein S5.
O. Galkin, A. A. Bentley, S. Gupta, B.-A. Compton, B. Mazumder, T. G. Kinzy, W. C. Merrick, M. Hatzoglou, T. V. Pestova, C. U.T. Hellen, et al. (2007)
RNA
13, 2116-2128
|Abstract »|Full Text »|PDF »
Structure and dynamics of a ribosome-bound nascent chain by NMR spectroscopy.
S.-T. D. Hsu, P. Fucini, L. D. Cabrita, H. Launay, C. M. Dobson, and J. Christodoulou (2007)
PNAS
104, 16516-16521
|Abstract »|Full Text »|PDF »
Structural Characterization of the Ribosome Maturation Protein, RimM.
S. Suzuki, A. Tatsuguchi, E. Matsumoto, M. Kawazoe, T. Kaminishi, M. Shirouzu, Y. Muto, C. Takemoto, and S. Yokoyama (2007)
J. Bacteriol.
189, 6397-6406
|Abstract »|Full Text »|PDF »
Detecting the Coevolution of Biosequences An Example of RNA Interaction Prediction.
C.-H. Yeang, J. F. J. Darot, H. F. Noller, and D. Haussler (2007)
Mol. Biol. Evol.
24, 2119-2131
|Abstract »|Full Text »|PDF »
Simulations of RNA base pairs in a nanodroplet reveal solvation-dependent stability.
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.
M. Terribilini, J. D. Sander, J.-H. Lee, P. Zaback, R. L. Jernigan, V. Honavar, and D. Dobbs (2007)
Nucleic Acids Res.
35, W578-W584
|Abstract »|Full Text »|PDF »
The RNA Ontology Consortium: An open invitation to the RNA community.
N. B. LEONTIS, R. B. ALTMAN, H. M. BERMAN, S. E. BRENNER, J. W. BROWN, D. R. ENGELKE, S. C. HARVEY, S. R. HOLBROOK, F. JOSSINET, S. E. LEWIS, et al. (2006)
RNA
12, 533-541
|Abstract »|Full Text »|PDF »
Structural and evolutionary classification of G/U wobble basepairs in the ribosome.
A. Mokdad, M. V. Krasovska, J. Sponer, and N. B. Leontis (2006)
Nucleic Acids Res.
34, 1326-1341
|Abstract »|Full Text »|PDF »