Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 25 March 2005:
Vol. 307. no. 5717, pp. 1969 - 1972
DOI: 10.1126/science.1108329

Reports

RNA-Dependent Cysteine Biosynthesis in Archaea

Anselm Sauerwald,1 Wenhong Zhu,3 Tiffany A. Major,4 Hervé Roy,5 Sotiria Palioura,1 Dieter Jahn,6 William B. Whitman,4 John R. Yates, 3rd,3 Michael Ibba,5 Dieter Söll1,2*

Several methanogenic archaea lack cysteinyl–transfer RNA (tRNA) synthetase (CysRS), the essential enzyme that provides Cys-tRNACys for translation in most organisms. Partial purification of the corresponding activity from Methanocaldococcus jannaschii indicated that tRNACys becomes acylated with O-phosphoserine (Sep) but not with cysteine. Further analyses identified a class II–type O-phosphoseryl-tRNA synthetase (SepRS) and Sep-tRNA:Cys-tRNA synthase (SepCysS). SepRS specifically forms Sep-tRNACys, which is then converted to Cys-tRNACys by SepCysS. Comparative genomic analyses suggest that this pathway, encoded in all organisms lacking CysRS, can also act as the sole route for cysteine biosynthesis. This was proven for Methanococcus maripaludis, where deletion of the SepRS-encoding gene resulted in cysteine auxotrophy. As the conversions of Sep-tRNA to Cys-tRNA or to selenocysteinyl-tRNA are chemically analogous, the catalytic activity of SepCysS provides a means by which both cysteine and selenocysteine may have originally been added to the genetic code.

1 Department of Molecular Biophysics and Biochemistry
2 Department of Chemistry, Yale University, New Haven, CT 06520–8114, USA.
3 Department of Cell Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
4 Department of Microbiology, University of Georgia, Athens, GA 30602–2605, USA.
5 Department of Microbiology, The Ohio State University, Columbus, OH 43210–1292, USA.
6 Department of Microbiology, Technische Universität Braunschweig, D-38106 Braunschweig, Germany.

Note added in proof: A recently published bioinformatics analysis has suggested that Mj1660 is a class II CysRS (32).

* To whom correspondence should be addressed. E-mail: soll{at}trna.chem.yale.edu

Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Pyrrolo-C as a molecular probe for monitoring conformations of the tRNA 3' end.
C.-M. Zhang, C. Liu, T. Christian, H. Gamper, J. Rozenski, D. Pan, J. B. Randolph, E. Wickstrom, B. S. Cooperman, and Y.-M. Hou (2008)
RNA 14, 2245-2253
   Abstract »    Full Text »    PDF »
The Homotetrameric Phosphoseryl-tRNA Synthetase from Methanosarcina mazei Exhibits Half-of-the-sites Activity.
S. I. Hauenstein, Y.-M. Hou, and J. J. Perona (2008)
J. Biol. Chem. 283, 21997-22006
   Abstract »    Full Text »    PDF »
Redundant Synthesis of Cysteinyl-tRNACys in Methanosarcina mazei.
S. I. Hauenstein and J. J. Perona (2008)
J. Biol. Chem. 283, 22007-22017
   Abstract »    Full Text »    PDF »
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
K. Sheppard, J. Yuan, M. J. Hohn, B. Jester, K. M. Devine, and D. Soll (2008)
Nucleic Acids Res. 36, 1813-1825
   Abstract »    Full Text »    PDF »
Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation.
Y. Araiso, S. Palioura, R. Ishitani, R. L. Sherrer, P. O'Donoghue, J. Yuan, H. Oshikane, N. Domae, J. DeFranco, D. Soll, et al. (2008)
Nucleic Acids Res. 36, 1187-1199
   Abstract »    Full Text »    PDF »
Structure and Catalytic Mechanism of Eukaryotic Selenocysteine Synthase.
O. M. Ganichkin, X.-M. Xu, B. A. Carlson, H. Mix, D. L. Hatfield, V. N. Gladyshev, and M. C. Wahl (2008)
J. Biol. Chem. 283, 5849-5865
   Abstract »    Full Text »    PDF »
Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation.
J. M. Kavran, S. Gundllapalli, P. O'Donoghue, M. Englert, D. Soll, and T. A. Steitz (2007)
PNAS 104, 11268-11273
   Abstract »    Full Text »    PDF »
Toward understanding phosphoseryl-tRNACys formation: The crystal structure of Methanococcus maripaludis phosphoseryl-tRNA synthetase.
S. Kamtekar, M. J. Hohn, H.-S. Park, M. Schnitzbauer, A. Sauerwald, D. Soll, and T. A. Steitz (2007)
PNAS 104, 2620-2625
   Abstract »    Full Text »    PDF »
Biosynthesis of Phosphoserine in the Methanococcales.
S. Helgadottir, G. Rosas-Sandoval, D. Soll, and D. E. Graham (2007)
J. Bacteriol. 189, 575-582
   Abstract »    Full Text »    PDF »
RNA-dependent conversion of phosphoserine forms selenocysteine in eukaryotes and archaea.
J. Yuan, S. Palioura, J. C. Salazar, D. Su, P. O'Donoghue, M. J. Hohn, A. M. Cardoso, W. B. Whitman, and D. Soll (2006)
PNAS 103, 18923-18927
   Abstract »    Full Text »    PDF »
A single tRNA base pair mediates bacterial tRNA-dependent biosynthesis of asparagine.
M. Bailly, S. Giannouli, M. Blaise, C. Stathopoulos, D. Kern, and H. D. Becker (2006)
Nucleic Acids Res. 34, 6083-6094
   Abstract »    Full Text »    PDF »
Emergence of the universal genetic code imprinted in an RNA record.
M. J. Hohn, H.-S. Park, P. O'Donoghue, M. Schnitzbauer, and D. Soll (2006)
PNAS 103, 18095-18100
   Abstract »    Full Text »    PDF »
The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical.
P. V. Cornish, S. N. Stammler, and D. P. Giedroc (2006)
RNA 12, 1959-1969
   Abstract »    Full Text »    PDF »
New surprises in genetic coding and how an ingenious experiment was almost scooped, by evolution.
T. Pederson (2006)
FASEB J 20, 1759-1760
   Abstract »    Full Text »    PDF »
Collective evolution and the genetic code.
K. Vetsigian, C. Woese, and N. Goldenfeld (2006)
PNAS 103, 10696-10701
   Abstract »    Full Text »    PDF »
Structural basis of RNA-dependent recruitment of glutamine to the genetic code..
H. Oshikane, K. Sheppard, S. Fukai, Y. Nakamura, R. Ishitani, T. Numata, R. L. Sherrer, L. Feng, E. Schmitt, M. Panvert, et al. (2006)
Science 312, 1950-1954
   Abstract »    Full Text »    PDF »
Supramolecular complexes mediate selenocysteine incorporation in vivo..
A. Small-Howard, N. Morozova, Z. Stoytcheva, E. P. Forry, J. B. Mansell, J. W. Harney, B. A. Carlson, X.-m. Xu, D. L. Hatfield, and M. J. Berry (2006)
Mol. Cell. Biol. 26, 2337-2346
   Abstract »    Full Text »    PDF »
The evolutionary history of Cys-tRNACys formation.
P. O'Donoghue, A. Sethi, C. R. Woese, and Z. A. Luthey-Schulten (2005)
PNAS 102, 19003-19008
   Abstract »    Full Text »    PDF »
Loss of Editing Activity during the Evolution of Mitochondrial Phenylalanyl-tRNA Synthetase.
H. Roy, J. Ling, J. Alfonzo, and M. Ibba (2005)
J. Biol. Chem. 280, 38186-38192
   Abstract »    Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)