Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Science 24 September 2004:
Vol. 305. no. 5692, pp. 1966 - 1968
DOI: 10.1126/science.1099776

Reports

The Genomic Sequence of the Accidental Pathogen Legionella pneumophila

Minchen Chien,1* Irina Morozova,1* Shundi Shi,1* Huitao Sheng,1 Jing Chen,1 Shawn M. Gomez,2 Gifty Asamani,1 Kendra Hill,1 John Nuara,1 Marc Feder,1 Justin Rineer,1 Joseph J. Greenberg,1 Valeria Steshenko,1 Samantha H. Park,1 Baohui Zhao,3 Elita Teplitskaya,1 John R. Edwards,1,4 Sergey Pampou,1 Anthi Georghiou,1 I.-Chun Chou,1 William Iannuccilli,1 Michael E. Ulz,1 Dae H. Kim,1 Alex Geringer-Sameth,1 Curtis Goldsberry,1 Pavel Morozov,1 Stuart G. Fischer,1 Gil Segal,5 Xiaoyan Qu,1 Andrey Rzhetsky,1 Peisen Zhang,1 Eftihia Cayanis,1 Pieter J. De Jong,3{dagger} Jingyue Ju,1,4 Sergey Kalachikov,1 Howard A. Shuman,6 James J. Russo1{ddagger}

We present the genomic sequence of Legionella pneumophila, the bacterial agent of Legionnaires' disease, a potentially fatal pneumonia acquired from aerosolized contaminated fresh water. The genome includes a 45–kilobase pair element that can exist in chromosomal and episomal forms, selective expansions of important gene families, genes for unexpected metabolic pathways, and previously unknown candidate virulence determinants. We highlight the genes that may account for Legionella's ability to survive in protozoa, mammalian macrophages, and inhospitable environmental niches and that may define new therapeutic targets.

1 Columbia Genome Center, Columbia University College of Physicians and Surgeons, New York, NY 10032, USA.
2 Unite de Biochimie et Biologie Moleculaire des Insectes, Institut Pasteur, Paris 75015 France.
3 BACPAC Resources Laboratory, Roswell Park Cancer Institute, Buffalo, NY 14263, USA.
4 Department of Chemical Engineering, The Fu Foundation School of Engineering and Applied Science, Columbia University, New York, NY 10027, USA.
5 Department of Molecular Microbiology and Biotechnology, Tel Aviv University, Tel Aviv 69978, Israel.
6 Department of Microbiology, Columbia University College of Physicians and Surgeons, New York, NY 10032, USA.



* These authors contributed equally to this work.

{dagger} Present address: BACPAC Resources Center, Children's Hospital Oakland Research Institute, Oakland, CA 94609, USA.

{ddagger} To whom correspondence should be addressed. E-mail: jjr4{at}columbia.edu

Read the Full Text


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
bdhA-patD Operon as a Virulence Determinant, Revealed by a Novel Large-Scale Approach for Identification of Legionella pneumophila Mutants Defective for Amoeba Infection.
P. Aurass, B. Pless, K. Rydzewski, G. Holland, N. Bannert, and A. Flieger (2009)
Appl. Envir. Microbiol. 75, 4506-4515
   Abstract »    Full Text »    PDF »
Pseudomonas aeruginosa Las quorum sensing autoinducer suppresses growth and biofilm production in Legionella species.
S. Kimura, K. Tateda, Y. Ishii, M. Horikawa, S. Miyairi, N. Gotoh, M. Ishiguro, and K. Yamaguchi (2009)
Microbiology 155, 1934-1939
   Abstract »    Full Text »    PDF »
PCR-based 'serotyping' of Legionella pneumophila.
A. Thurmer, J. H. Helbig, E. Jacobs, and P. C. Luck (2009)
J. Med. Microbiol. 58, 588-595
   Abstract »    Full Text »    PDF »
{sigma}S Controls Multiple Pathways Associated with Intracellular Multiplication of Legionella pneumophila.
G. Hovel-Miner, S. Pampou, S. P. Faucher, M. Clarke, I. Morozova, P. Morozov, J. J. Russo, H. A. Shuman, and S. Kalachikov (2009)
J. Bacteriol. 191, 2461-2473
   Abstract »    Full Text »    PDF »
Bacterial FIC Proteins AMP Up Infection.
C. R. Roy and S. Mukherjee (2009)
Science Signaling 2, pe14
   Abstract »    Full Text »    PDF »
A type II secreted RNase of Legionella pneumophila facilitates optimal intracellular infection of Hartmannella vermiformis.
O. Rossier, J. Dao, and N. P. Cianciotto (2009)
Microbiology 155, 882-890
   Abstract »    Full Text »    PDF »
AmpC {beta}-Lactamases.
G. A. Jacoby (2009)
Clin. Microbiol. Rev. 22, 161-182
   Abstract »    Full Text »    PDF »
The PmrA/PmrB Two-Component System of Legionella pneumophila Is a Global Regulator Required for Intracellular Replication within Macrophages and Protozoa.
S. Al-Khodor, S. Kalachikov, I. Morozova, C. T. Price, and Y. Abu Kwaik (2009)
Infect. Immun. 77, 374-386
   Abstract »    Full Text »    PDF »
Possible Effects of Microbial Ecto-Nucleoside Triphosphate Diphosphohydrolases on Host-Pathogen Interactions.
F. M. Sansom, S. C. Robson, and E. L. Hartland (2008)
Microbiol. Mol. Biol. Rev. 72, 765-781
   Abstract »    Full Text »    PDF »
Synergistic Contribution of the Legionella pneumophila lqs Genes to Pathogen-Host Interactions.
A. Tiaden, T. Spirig, P. Carranza, H. Bruggemann, K. Riedel, L. Eberl, C. Buchrieser, and H. Hilbi (2008)
J. Bacteriol. 190, 7532-7547
   Abstract »    Full Text »    PDF »
Identification of a Hypervariable Region Containing New Legionella pneumophila Icm/Dot Translocated Substrates by Using the Conserved icmQ Regulatory Signature.
T. Zusman, E. Degtyar, and G. Segal (2008)
Infect. Immun. 76, 4581-4591
   Abstract »    Full Text »    PDF »
Significant Role for ladC in Initiation of Legionella pneumophila Infection.
H. J. Newton, F. M. Sansom, J. Dao, C. Cazalet, H. Bruggemann, C. Albert-Weissenberger, C. Buchrieser, N. P. Cianciotto, and E. L. Hartland (2008)
Infect. Immun. 76, 3075-3085
   Abstract »    Full Text »    PDF »
The Legionella Autoinducer Synthase LqsA Produces an {alpha}-Hydroxyketone Signaling Molecule.
T. Spirig, A. Tiaden, P. Kiefer, C. Buchrieser, J. A. Vorholt, and H. Hilbi (2008)
J. Biol. Chem. 283, 18113-18123
   Abstract »    Full Text »    PDF »
Ankyrin Repeat Proteins Comprise a Diverse Family of Bacterial Type IV Effectors.
X. Pan, A. Luhrmann, A. Satoh, M. A. Laskowski-Arce, and C. R. Roy (2008)
Science 320, 1651-1654
   Abstract »    Full Text »    PDF »
The simple and rapid detection of specific PCR products from bacterial genomes using Zn finger proteins.
Y. Osawa, K. Ikebukuro, H. Motoki, T. Matsuo, M. Horiuchi, and K. Sode (2008)
Nucleic Acids Res. 36, e68
   Abstract »    Full Text »    PDF »
Enzymatic Properties of an Ecto-nucleoside Triphosphate Diphosphohydrolase from Legionella pneumophila: SUBSTRATE SPECIFICITY AND REQUIREMENT FOR VIRULENCE.
F. M. Sansom, P. Riedmaier, H. J. Newton, M. A. Dunstone, C. E. Muller, H. Stephan, E. Byres, T. Beddoe, J. Rossjohn, P. J. Cowan, et al. (2008)
J. Biol. Chem. 283, 12909-12918
   Abstract »    Full Text »    PDF »
Proteomic Characterization of the Whole Secretome of Legionella pneumophila and Functional Analysis of Outer Membrane Vesicles.
F. Galka, S. N. Wai, H. Kusch, S. Engelmann, M. Hecker, B. Schmeck, S. Hippenstiel, B. E. Uhlin, and M. Steinert (2008)
Infect. Immun. 76, 1825-1836
   Abstract »    Full Text »    PDF »
Application of unstable Gfp variants to the kinetic study of Legionella pneumophila icm gene expression during infection.
O. V. Barysheva, J. Fujii, G. Takaesu, and S.-i. Yoshida (2008)
Microbiology 154, 1015-1025
   Abstract »    Full Text »    PDF »
Multigenome analysis identifies a worldwide distributed epidemic Legionella pneumophila clone that emerged within a highly diverse species.
C. Cazalet, S. Jarraud, Y. Ghavi-Helm, F. Kunst, P. Glaser, J. Etienne, and C. Buchrieser (2008)
Genome Res. 18, 431-441
   Abstract »    Full Text »    PDF »
The Type II Secretion System of Legionella pneumophila Elaborates Two Aminopeptidases, as Well as a Metalloprotease That Contributes to Differential Infection among Protozoan Hosts.
O. Rossier, J. Dao, and N. P. Cianciotto (2008)
Appl. Envir. Microbiol. 74, 753-761
   Abstract »    Full Text »    PDF »
The post-transcriptional regulator CsrA plays a central role in the adaptation of bacterial pathogens to different stages of infection in animal hosts.
C. Lucchetti-Miganeh, E. Burrowes, C. Baysse, and G. Ermel (2008)
Microbiology 154, 16-29
   Abstract »    Full Text »    PDF »
Transcriptional profiling of Legionella pneumophila biofilm cells and the influence of iron on biofilm formation.
T. Hindre, H. Bruggemann, C. Buchrieser, and Y. Hechard (2008)
Microbiology 154, 30-41
   Abstract »    Full Text »    PDF »
Sel1 Repeat Protein LpnE Is a Legionella pneumophila Virulence Determinant That Influences Vacuolar Trafficking.
H. J. Newton, F. M. Sansom, J. Dao, A. D. McAlister, J. Sloan, N. P. Cianciotto, and E. L. Hartland (2007)
Infect. Immun. 75, 5575-5585
   Abstract »    Full Text »    PDF »
Expression of Legionella pneumophila paralogous lipid A biosynthesis genes under different growth conditions.
U. Albers, A. Tiaden, T. Spirig, D. Al Alam, S. M. Goyert, S. C. Gangloff, and H. Hilbi (2007)
Microbiology 153, 3817-3829
   Abstract »    Full Text »    PDF »
The Secreted Pyomelanin Pigment of Legionella pneumophila Confers Ferric Reductase Activity.
C. H. Chatfield and N. P. Cianciotto (2007)
Infect. Immun. 75, 4062-4070
   Abstract »    Full Text »    PDF »
Identification of Variable-Number Tandem-Repeat (VNTR) Sequences in Legionella pneumophila and Development of an Optimized Multiple-Locus VNTR Analysis Typing Scheme.
C. Pourcel, P. Visca, B. Afshar, S. D'Arezzo, G. Vergnaud, and N. K. Fry (2007)
J. Clin. Microbiol. 45, 1190-1199
   Abstract »    Full Text »    PDF »
Environmental Mimics and the Lvh Type IVA Secretion System Contribute to Virulence-Related Phenotypes of Legionella pneumophila.
P. Bandyopadhyay, S. Liu, C. B. Gabbai, Z. Venitelli, and H. M. Steinman (2007)
Infect. Immun. 75, 723-735
   Abstract »    Full Text »    PDF »
Legionella pneumophila type II secretome reveals unique exoproteins and a chitinase that promotes bacterial persistence in the lung.
S. DebRoy, J. Dao, M. Soderberg, O. Rossier, and N. P. Cianciotto (2006)
PNAS 103, 19146-19151
   Abstract »    Full Text »    PDF »
A Legionella pneumophila-translocated substrate that is required for growth within macrophages and protection from host cell death.
R. K. Laguna, E. A. Creasey, Z. Li, N. Valtz, and R. R. Isberg (2006)
PNAS 103, 18745-18750
   Abstract »    Full Text »    PDF »
Growth-phase-dependent mobility of the lvh-encoding region in Legionella pneumophila strain Paris.
A. Doleans-Jordheim, M. Akermi, C. Ginevra, C. Cazalet, E. Kay, D. Schneider, C. Buchrieser, D. Atlan, F. Vandenesch, J. Etienne, et al. (2006)
Microbiology 152, 3561-3568
   Abstract »    Full Text »    PDF »
Identification of Non-dot/icm Suppressors of the Legionella pneumophila {Delta}dotL Lethality Phenotype.
C. D. Vincent, B. A. Buscher, J. R. Friedman, L. A. Williams, P. Bardill, and J. P. Vogel (2006)
J. Bacteriol. 188, 8231-8243
   Abstract »    Full Text »    PDF »
Legionella pneumophila Mip, a Surface-Exposed Peptidylproline cis-trans-Isomerase, Promotes the Presence of Phospholipase C-Like Activity in Culture Supernatants.
S. DebRoy, V. Aragon, S. Kurtz, and N. P. Cianciotto (2006)
Infect. Immun. 74, 5152-5160
   Abstract »    Full Text »    PDF »
Distribution of 19 major virulence genes in Legionella pneumophila serogroup 1 isolates from patients and water in Queensland, Australia..
B. Huang, Z. Yuan, B. A. Heron, B. R. Gray, S. Eglezos, J. R. Bates, and J. Savill (2006)
J. Med. Microbiol. 55, 993-997
   Abstract »    Full Text »    PDF »
Phylogenomic and Biochemical Characterization of Three Legionella pneumophila Polypeptide Deformylases..
J. Huang, G. S. Van Aller, A. N. Taylor, J. J. Kerrigan, W.-S. Liu, J. M. Trulli, Z. Lai, D. Holmes, K. M. Aubart, J. R. Brown, et al. (2006)
J. Bacteriol. 188, 5249-5257
   Abstract »    Full Text »    PDF »
Cysteine Metabolism in Legionella pneumophila: Characterization of an L-Cystine-Utilizing Mutant..
F. Ewann and P. S. Hoffman (2006)
Appl. Envir. Microbiol. 72, 3993-4000
   Abstract »    Full Text »    PDF »
Membrane Vesicles Shed by Legionella pneumophila Inhibit Fusion of Phagosomes with Lysosomes..
E. Fernandez-Moreira, J. H. Helbig, and M. S. Swanson (2006)
Infect. Immun. 74, 3285-3295
   Abstract »    Full Text »    PDF »
Quantitative Real-Time Legionella PCR for Environmental Water Samples: Data Interpretation.
P. Joly, P.-A. Falconnet, J. Andre, N. Weill, M. Reyrolle, F. Vandenesch, M. Maurin, J. Etienne, and S. Jarraud (2006)
Appl. Envir. Microbiol. 72, 2801-2808
   Abstract »    Full Text »    PDF »
Periodic Extinctions of Transposable Elements in Bacterial Lineages: Evidence from Intragenomic Variation in Multiple Genomes.
A. Wagner (2006)
Mol. Biol. Evol. 23, 723-733
   Abstract »    Full Text »    PDF »
Identification of Legionella pneumophila-Specific Genes by Genomic Subtractive Hybridization with Legionella micdadei and Identification of lpnE, a Gene Required for Efficient Host Cell Entry.
H. J. Newton, F. M. Sansom, V. Bennett-Wood, and E. L. Hartland (2006)
Infect. Immun. 74, 1683-1691
   Abstract »    Full Text »    PDF »
lbtA and lbtB Are Required for Production of the Legionella pneumophila Siderophore Legiobactin.
K. A. Allard, V. K. Viswanathan, and N. P. Cianciotto (2006)
J. Bacteriol. 188, 1351-1363
   Abstract »    Full Text »    PDF »
Temperature-Regulated Formation of Mycelial Mat-Like Biofilms by Legionella pneumophila.
Z. Piao, C. C. Sze, O. Barysheva, K.-i. Iida, and S.-i. Yoshida (2006)
Appl. Envir. Microbiol. 72, 1613-1622
   Abstract »    Full Text »    PDF »
Isolation of Poly-3-Hydroxybutyrate Metabolism Genes from Complex Microbial Communities by Phenotypic Complementation of Bacterial Mutants.
C. Wang, D. J. Meek, P. Panchal, N. Boruvka, F. S. Archibald, B. T. Driscoll, and T. C. Charles (2006)
Appl. Envir. Microbiol. 72, 384-391
   Abstract »    Full Text »    PDF »
Evidence for Acquisition of Legionella Type IV Secretion Substrates via Interdomain Horizontal Gene Transfer.
K. S. de Felipe, S. Pampou, O. S. Jovanovic, C. D. Pericone, S. F. Ye, S. Kalachikov, and H. A. Shuman (2005)
J. Bacteriol. 187, 7716-7726
   Abstract »    Full Text »    PDF »
A Hypervariable 130-Kilobase Genomic Region of Magnetospirillum gryphiswaldense Comprises a Magnetosome Island Which Undergoes Frequent Rearrangements during Stationary Growth.
S. Ullrich, M. Kube, S. Schubbe, R. Reinhardt, and D. Schuler (2005)
J. Bacteriol. 187, 7176-7184
   Abstract »    Full Text »    PDF »
Characterization of Legionella pneumophila pmiA, a Gene Essential for Infectivity of Protozoa and Macrophages.
M. Miyake, T. Watanabe, H. Koike, M. Molmeret, Y. Imai, and Y. Abu Kwaik (2005)
Infect. Immun. 73, 6272-6282
   Abstract »    Full Text »    PDF »
Legionella pneumophila NudA Is a Nudix Hydrolase and Virulence Factor.
P. H. Edelstein, B. Hu, T. Shinzato, M. A. C. Edelstein, W. Xu, and M. J. Bessman (2005)
Infect. Immun. 73, 6567-6576
   Abstract »    Full Text »    PDF »
Components of the Legionella pneumophila Flagellar Regulon Contribute to Multiple Virulence Traits, Including Lysosome Avoidance and Macrophage Death.
A. B. Molofsky, L. M. Shetron-Rama, and M. S. Swanson (2005)
Infect. Immun. 73, 5720-5734
   Abstract »    Full Text »    PDF »
Specificity of Legionella pneumophila and Coxiella burnetii Vacuoles and Versatility of Legionella pneumophila Revealed by Coinfection.
J.-D. Sauer, J. G. Shannon, D. Howe, S. F. Hayes, M. S. Swanson, and R. A. Heinzen (2005)
Infect. Immun. 73, 4494-4504
   Abstract »    Full Text »    PDF »
Characterization of the Major Secreted Zinc Metalloprotease- Dependent Glycerophospholipid:Cholesterol Acyltransferase, PlaC, of Legionella pneumophila.
S. Banerji, M. Bewersdorff, B. Hermes, N. P. Cianciotto, and A. Flieger (2005)
Infect. Immun. 73, 2899-2909
   Abstract »    Full Text »    PDF »
The Legionella pneumophila tatB Gene Facilitates Secretion of Phospholipase C, Growth under Iron-Limiting Conditions, and Intracellular Infection.
O. Rossier and N. P. Cianciotto (2005)
Infect. Immun. 73, 2020-2032
   Abstract »    Full Text »    PDF »
Pathogen effector protein screening in yeast identifies Legionella factors that interfere with membrane trafficking.
N. Shohdy, J. A. Efe, S. D. Emr, and H. A. Shuman (2005)
PNAS 102, 4866-4871
   Abstract »    Full Text »    PDF »
The amoebae plate test implicates a paralogue of lpxB in the interaction of Legionella pneumophila with Acanthamoeba castellanii.
U. Albers, K. Reus, H. A. Shuman, and H. Hilbi (2005)
Microbiology 151, 167-182
   Abstract »    Full Text »    PDF »
DNA of Legionnaires' bacterium unravelled.
(2004)
Journal of Infection Prevention 5, 8
   PDF »
Genome Update: correlation of bacterial genomic properties.
P. F. Hallin, T. Coenye, T. T. Binnewies, H. Jarmer, H.-H. Staerfeldt, and D. W. Ussery (2004)
Microbiology 150, 3899-3903
   Full Text »    PDF »



To Advertise     Find Products


Science. ISSN 0036-8075 (print), 1095-9203 (online)