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Kenneth Birnbaum,1Dennis E. Shasha,2Jean Y. Wang,3Jee W. Jung,1Georgina M. Lambert,4David W. Galbraith,4Philip N. Benfey3*
A global map of gene expression within an organ can identifygenes with coordinated expression in localized domains, therebyrelating gene activity to cell fate and tissue specialization.Here, we present localization of expression of more than 22,000genes in the Arabidopsis root. Gene expression was mapped to15 different zones of the root that correspond to cell typesand tissues at progressive developmental stages. Patterns ofgene expression traverse traditional anatomical boundaries andshow cassettes of hormonal response. Chromosomal clusteringdefined some coregulated genes. This expression map correlatesgroups of genes to specific cell fates and should serve to guidereverse genetics.
1 Department of Biology, New York University, New York, NY 10003, USA. 2 Courant Institute of Mathematical Sciences, New York University, New York, NY 10003, USA. 3 Department of Biology, Duke University, Box 91000, Durham, NC 27708, USA. 4 Department of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.
* To whom correspondence should be addressed. E-mail: philip.benfey{at}duke.edu
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From the Cover: A gene essential for hydrotropism in roots.
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134, 681-690
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Plant Physiology
143, 924-940
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19, 131-147
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PLANT CELL
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142, 866-877
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PLANT CELL
18, 2101-2111
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Plant Physiology
141, 1284-1292
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PNAS
103, 9738-9743
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Expression Profiling of Auxin-treated Arabidopsis Roots: Toward a Molecular Analysis of Lateral Root Emergence.
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SCARFACE Encodes an ARF-GAP That Is Required for Normal Auxin Efflux and Vein Patterning in Arabidopsis.
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PLANT CELL
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LucTrap Vectors Are Tools to Generate Luciferase Fusions for the Quantification of Transcript and Protein Abundance in Vivo..
L. I. A. Calderon-Villalobos, C. Kuhnle, H. Li, M. Rosso, B. Weisshaar, and C. Schwechheimer (2006)
Plant Physiology
141, 3-14
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J.-Y. Lee, J. Colinas, J. Y. Wang, D. Mace, U. Ohler, and P. N. Benfey (2006)
PNAS
103, 6055-6060
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Arabidopsis TEBICHI, with Helicase and DNA Polymerase Domains, Is Required for Regulated Cell Division and Differentiation in Meristems.
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PLANT CELL
18, 879-892
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M. S. Pischke, E. L. Huttlin, A. D. Hegeman, and M. R. Sussman (2006)
Plant Physiology
140, 1255-1278
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Progressive Inhibition by Water Deficit of Cell Wall Extensibility and Growth along the Elongation Zone of Maize Roots Is Related to Increased Lignin Metabolism and Progressive Stelar Accumulation of Wall Phenolics.
L. Fan, R. Linker, S. Gepstein, E. Tanimoto, R. Yamamoto, and P. M. Neumann (2006)
Plant Physiology
140, 603-612
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The Arabidopsis genome: A foundation for plant research.
Functional Genomic Analysis of the AUXIN/INDOLE-3-ACETIC ACID Gene Family Members in Arabidopsis thaliana.
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PLANT CELL
17, 3282-3300
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Cuticular Lipid Composition, Surface Structure, and Gene Expression in Arabidopsis Stem Epidermis.
M. C. Suh, A. L. Samuels, R. Jetter, L. Kunst, M. Pollard, J. Ohlrogge, and F. Beisson (2005)
Plant Physiology
139, 1649-1665
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Multiple Type-B Response Regulators Mediate Cytokinin Signal Transduction in Arabidopsis.
M. G. Mason, D. E. Mathews, D. A. Argyros, B. B. Maxwell, J. J. Kieber, J. M. Alonso, J. R. Ecker, and G. E. Schaller (2005)
PLANT CELL
17, 3007-3018
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Plant Physiology
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PNAS
102, 14469-14474
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56, 2433-2442
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Transcriptional Profile of the Arabidopsis Root Quiescent Center.
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PLANT CELL
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The Maize Root Transcriptome by Serial Analysis of Gene Expression.
V. Poroyko, L.G. Hejlek, W.G. Spollen, G.K. Springer, H.T. Nguyen, R.E. Sharp, and H.J. Bohnert (2005)
Plant Physiology
138, 1700-1710
|Abstract »|Full Text »|PDF »
Developmental Networks.
P. N. Benfey (2005)
Plant Physiology
138, 548-549
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Systems Biology for the Virtual Plant.
R. A. Gutierrez, D. E. Shasha, and G. M. Coruzzi (2005)
Plant Physiology
138, 550-554
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Small RNAs and Arabidopsis. A Fast Forward Look.
J. C. Carrington (2005)
Plant Physiology
138, 565-566
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High-Throughput RNA Isolation Technologies. New Tools for High-Resolution Gene Expression Profiling in Plant Systems.
J.-Y. Lee, M. Levesque, and P. N. Benfey (2005)
Plant Physiology
138, 585-590
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Immunopurification of Polyribosomal Complexes of Arabidopsis for Global Analysis of Gene Expression.
M. E. Zanetti, I.-F. Chang, F. Gong, D. W. Galbraith, and J. Bailey-Serres (2005)
Plant Physiology
138, 624-635
|Abstract »|Full Text »|PDF »
Genome-Wide Analysis of Gene Expression Profiles Associated with Cell Cycle Transitions in Growing Organs of Arabidopsis.
G. T.S. Beemster, L. De Veylder, S. Vercruysse, G. West, D. Rombaut, P. Van Hummelen, A. Galichet, W. Gruissem, D. Inze, and M. Vuylsteke (2005)
Plant Physiology
138, 734-743
|Abstract »|Full Text »|PDF »
