Science 26 September 2003: Vol. 301. no. 5641, pp. 1866 - 1867 DOI: 10.1126/science.1089072

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Network topology determines dynamics of the mammalian MAPK1,2 signaling network: bifan motif regulation of C-Raf and B-Raf isoforms by FGFR and MC1R.

M. Muller, M. Obeyesekere, G. B. Mills, and P. T. Ram (2008)
FASEB J 22, 1393-1403
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Functions of Bifans in Context of Multiple Regulatory Motifs in Signaling Networks.

A. Lipshtat, S. P. Purushothaman, R. Iyengar, and A. Ma'ayan (2008)
Biophys. J. 94, 2566-2579
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Innovative Computational Methods for Transcriptomic Data Analysis: A Case Study in the Use of FPT for Practical Algorithm Design and Implementation.

M. A. Langston, A. D. Perkins, A. M. Saxton, J. A. Scharff, and B. H. Voy (2008)
The Computer Journal 51, 26-38
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Maintaining the Transcription Factor SpoIIID Level Late during Sporulation Causes Spore Defects in Bacillus subtilis.

L. Wang, J. Perpich, A. Driks, and L. Kroos (2007)
J. Bacteriol. 189, 7302-7309
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Extracting the hierarchical organization of complex systems.

M. Sales-Pardo, R. Guimera, A. A. Moreira, and L. A. N. Amaral (2007)
PNAS 104, 15224-15229
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'Genome design' model and multicellular complexity: golden middle.

A. E. Vinogradov (2006)
Nucleic Acids Res. 34, 5906-5914
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Dialysis at a Crossroads: Reverse Engineering Renal Replacement Therapy.

J. Himmelfarb (2006)
Clin. J. Am. Soc. Nephrol. 1, 896-902
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Mapping cis-acting regulatory variation in recombinant congenic strains.

P. D. Lee, B. Ge, C. M. T. Greenwood, D. Sinnett, Y. Fortin, S. Brunet, A. Fortin, M. Takane, E. Skamene, T. Pastinen, et al. (2006)
Physiol Genomics 25, 294-302
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Revealing the large-scale network organization of growth hormone-secreting cells.

X. Bonnefont, A. Lacampagne, A. Sanchez-Hormigo, E. Fino, A. Creff, M.-N. Mathieu, S. Smallwood, D. Carmignac, P. Fontanaud, P. Travo, et al. (2005)
PNAS 102, 16880-16885
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From the Cover: Spontaneous evolution of modularity and network motifs.

N. Kashtan and U. Alon (2005)
PNAS 102, 13773-13778
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A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae.

A. A. Petti and G. M. Church (2005)
Genome Res. 15, 1298-1306
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The DNA damage response and patient safety: engaging our molecular biology-oriented colleagues.

K. Pukk and D. C. Aron (2005)
Int. J. Qual. Health Care 17, 363-367
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Intracellular Signaling: Spatial and Temporal Control.

I. I. Moraru and L. M. Loew (2005)
Physiology 20, 169-179
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Novel specificities emerge by stepwise duplication of functional modules.

J. B. Pereira-Leal and S. A. Teichmann (2005)
Genome Res. 15, 552-559
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Role of the renin-angiotensin system in the pathogenesis of preeclampsia.

D. M. Shah (2005)
Am J Physiol Renal Physiol 288, F614-F625
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An initial blueprint for myogenic differentiation.

A. Blais, M. Tsikitis, D. Acosta-Alvear, R. Sharan, Y. Kluger, and B. D. Dynlacht (2005)
Genes & Dev. 19, 553-569
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A simple neural network model of the hippocampus suggesting its pathfinding role in episodic memory retrieval.

A. V. Samsonovich and G. A. Ascoli (2005)
Learn. Mem. 12, 193-208
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"Neural Networks" in Bacteria: Making Connections.

J. P. Armitage, I. B. Holland, U. Jenal, and B. Kenny (2005)
J. Bacteriol. 187, 26-36
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Maternal Control of Integument Cell Elongation and Zygotic Control of Endosperm Growth Are Coordinated to Determine Seed Size in Arabidopsis.

D. Garcia, J. N. Fitz Gerald, and F. Berger (2005)
PLANT CELL 17, 52-60
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Systems Biology and New Technologies Enable Predictive and Preventative Medicine.

L. Hood, J. R. Heath, M. E. Phelps, and B. Lin (2004)
Science 306, 640-643
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Polyanions and the Proteome.

L. S. Jones, B. Yazzie, and C. R. Middaugh (2004)
Mol. Cell. Proteomics 3, 746-769
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Towards dissecting nutrient metabolism in plants: a systems biology case study on sulphur metabolism.

V. J. Nikiforova, B. Gakiere, S. Kempa, M. Adamik, L. Willmitzer, H. Hesse, and R. Hoefgen (2004)
J. Exp. Bot. 55, 1861-1870
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Design of a directed molecular network.

G. Ashkenasy, R. Jagasia, M. Yadav, and M. R. Ghadiri (2004)
PNAS 101, 10872-10877
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OM Forum: Organic Production Systems: What the Biological Cell Can Teach Us About Manufacturing.

L. Demeester, K. Eichler, and C. H. Loch (2004)
MSOM 6, 115-132
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Does Selection Mold Molecular Networks?.

A. Wagner (2003)
Sci. STKE 2003, pe41
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Molecular Networks: The Top-Down View.

D. Bray (2003)
Science 301, 1864-1865
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Social Insect Networks.

J. H. Fewell (2003)
Science 301, 1867-1870
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