Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Rimma Belotserkovskaya,1*Sangtaek Oh,1*Vladimir A. Bondarenko,2George Orphanides,Vasily M. Studitsky,2Danny Reinberg1
The FACT (facilitates chromatin transcription) complex is requiredfor transcript elongation through nucleosomes by RNA polymeraseII (Pol II) in vitro. Here, we show that FACT facilitates PolIIdriven transcription by destabilizing nucleosomal structureso that one histone H2A-H2B dimer is removed during enzyme passage.We also demonstrate that FACT possesses intrinsic histone chaperoneactivity and can deposit core histones onto DNA. Importantly,FACT activity requires both of its constituent subunits andis dependent on the highly acidic C terminus of its larger subunit,Spt16. These findings define the mechanism by which Pol II cantranscribe through chromatin without disrupting its epigeneticstatus.
1 Howard Hughes Medical Institute, Department of Biochemistry, Division of Nucleic Acids Enzymology, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, Piscataway, NJ 08854, USA. 2 Department of Biochemistry, Wayne State University School of Medicine, Detroit, MI 48201, USA.
The editors suggest the following Related Resources on Science sites:
In Science Magazine
PERSPECTIVES
Jesper Q. Svejstrup (22 August 2003) Science301 (5636), 1053.
[DOI: 10.1126/science.1088901] |Summary »|Full Text »|PDF »
REPORTS
Abbie Saunders, Janis Werner, Erik D. Andrulis, Takahiro Nakayama, Susumu Hirose, Danny Reinberg, and John T. Lis (22 August 2003) Science301 (5636), 1094.
[DOI: 10.1126/science.1085712] |Abstract »|Full Text »|PDF »|Supporting Online Material »
Transcription of laminin {gamma}1 chain gene in rat mesangial cells: constitutive and inducible RNA polymerase II recruitment and chromatin states.
J. D. Nelson, S. Flanagin, Y. Kawata, O. Denisenko, and K. Bomsztyk (2008)
Am J Physiol Renal Physiol
294, F525-F533
|Abstract »|Full Text »|PDF »
Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events.
S. Flanagin, J. D. Nelson, D. G. Castner, O. Denisenko, and K. Bomsztyk (2008)
Nucleic Acids Res.
36, e17
|Abstract »|Full Text »|PDF »
A Role for Chd1 and Set2 in Negatively Regulating DNA Replication in Saccharomyces cerevisiae.
D. Biswas, S. Takahata, H. Xin, R. Dutta-Biswas, Y. Yu, T. Formosa, and D. J. Stillman (2008)
Genetics
178, 649-659
|Abstract »|Full Text »|PDF »
Chd1 and yFACT Act in Opposition in Regulating Transcription.
D. Biswas, R. Dutta-Biswas, and D. J. Stillman (2007)
Mol. Cell. Biol.
27, 6279-6287
|Abstract »|Full Text »|PDF »
Novel deletions of 14q11.2 associated with developmental delay, cognitive impairment and similar minor anomalies in three children.
F. Zahir, H. V Firth, A. Baross, A. D Delaney, P. Eydoux, W. T Gibson, S. Langlois, H. Martin, L. Willatt, M. A Marra, et al. (2007)
J. Med. Genet.
44, 556-561
|Abstract »|Full Text »|PDF »
Evidence that the Localization of the Elongation Factor Spt16 Across Transcribed Genes Is Dependent Upon Histone H3 Integrity in Saccharomyces cerevisiae.
A. A. Duina, A. Rufiange, J. Bracey, J. Hall, A. Nourani, and F. Winston (2007)
Genetics
177, 101-112
|Abstract »|Full Text »|PDF »
Isolation and Characterization of Proteins Associated with Histone H3 Tails in Vivo.
K. Heo, B. Kim, K. Kim, J. Choi, H. Kim, Y. Zhan, J. A. Ranish, and W. An (2007)
J. Biol. Chem.
282, 15476-15483
|Abstract »|Full Text »|PDF »
A role for noncoding transcription in activation of the yeast PHO5 gene.
The Dynamic Alterations of H2AX Complex during DNA Repair Detected by a Proteomic Approach Reveal the Critical Roles of Ca2+/Calmodulin in the Ionizing Radiation-induced Cell Cycle Arrest.
Y.-C. Du, S. Gu, J. Zhou, T. Wang, H. Cai, M. A. MacInnes, E. M. Bradbury, and X. Chen (2006)
Mol. Cell. Proteomics
5, 1033-1044
|Abstract »|Full Text »|PDF »
Comprehensive analysis of the ICEN (Interphase Centromere Complex) components enriched in the CENP-A chromatin of human cells.
H. Izuta, M. Ikeno, N. Suzuki, T. Tomonaga, N. Nozaki, C. Obuse, Y. Kisu, N. Goshima, F. Nomura, N. Nomura, et al. (2006)
Genes Cells
11, 673-684
|Abstract »|Full Text »|PDF »
Promoter Shuffling at a Nuclear Gene for Mitochondrial RPL27. Involvement of Interchromosome and Subsequent Intrachromosome Recombinations.
M. Ueda, S.-i. Arimura, M. P. Yamamoto, F. Takaiwa, N. Tsutsumi, and K.-i. Kadowaki (2006)
Plant Physiology
141, 702-710
|Abstract »|Full Text »|PDF »
Modifications of H3 and H4 during Chromatin Replication, Nucleosome Assembly, and Histone Exchange.
L. J. Benson, Y. Gu, T. Yakovleva, K. Tong, C. Barrows, C. L. Strack, R. G. Cook, C. A. Mizzen, and A. T. Annunziato (2006)
J. Biol. Chem.
281, 9287-9296
|Abstract »|Full Text »|PDF »
Distinct DNA Methylation Activity of Dnmt3a and Dnmt3b towards Naked and Nucleosomal DNA..
H. Takeshima, I. Suetake, H. Shimahara, K. Ura, S.-i. Tate, and S. Tajima (2006)
J. Biochem.
139, 503-515
|Abstract »|Full Text »|PDF »
AID-dependent histone acetylation is detected in immunoglobulin S regions.
L. Wang, N. Whang, R. Wuerffel, and A. L. Kenter (2006)
J. Exp. Med.
203, 215-226
|Abstract »|Full Text »|PDF »
Fast chromatin immunoprecipitation assay.
J. D. Nelson, O. Denisenko, P. Sova, and K. Bomsztyk (2006)
Nucleic Acids Res.
34, e2
|Abstract »|Full Text »|PDF »
Modulation of nucleosome-binding activity of FACT by poly(ADP-ribosyl)ation..
J.-Y. Huang, W.-H. Chen, Y.-L. Chang, H.-T. Wang, W.-t. Chuang, and S.-C. Lee (2006)
Nucleic Acids Res.
34, 2398-2407
|Abstract »|Full Text »|PDF »
Assembly and Disassembly of Nucleosome Core Particles Containing Histone Variants by Human Nucleosome Assembly Protein I.
M. Okuwaki, K. Kato, H. Shimahara, S.-i. Tate, and K. Nagata (2005)
Mol. Cell. Biol.
25, 10639-10651
|Abstract »|Full Text »|PDF »
Identification and Characterization of Elf1, a Conserved Transcription Elongation Factor in Saccharomyces cerevisiae.
D. Prather, N. J. Krogan, A. Emili, J. F. Greenblatt, and F. Winston (2005)
Mol. Cell. Biol.
25, 10122-10135
|Abstract »|Full Text »|PDF »
NAP1 Modulates Binding of Linker Histone H1 to Chromatin and Induces an Extended Chromatin Fiber Conformation.
J. F. Kepert, J. Mazurkiewicz, G. L. Heuvelman, K. F. Toth, and K. Rippe (2005)
J. Biol. Chem.
280, 34063-34072
|Abstract »|Full Text »|PDF »
Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing.
S. Huang, H. Zhou, D. Katzmann, M. Hochstrasser, E. Atanasova, and Z. Zhang (2005)
PNAS
102, 13410-13415
|Abstract »|Full Text »|PDF »
Structural Characterization of the Histone Variant macroH2A.
S. Chakravarthy, S. K. Y. Gundimella, C. Caron, P.-Y. Perche, J. R. Pehrson, S. Khochbin, and K. Luger (2005)
Mol. Cell. Biol.
25, 7616-7624
|Abstract »|Full Text »|PDF »
Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias.
C. Wirbelauer, O. Bell, and D. Schubeler (2005)
Genes & Dev.
19, 1761-1766
|Abstract »|Full Text »|PDF »
Genome-Scale Identification of Nucleosome Positions in S. cerevisiae.
G.-C. Yuan, Y.-J. Liu, M. F. Dion, M. D. Slack, L. F. Wu, S. J. Altschuler, and O. J. Rando (2005)
Science
309, 626-630
|Abstract »|Full Text »|PDF »
The Yeast FACT Complex Has a Role in Transcriptional Initiation.
D. Biswas, Y. Yu, M. Prall, T. Formosa, and D. J. Stillman (2005)
Mol. Cell. Biol.
25, 5812-5822
|Abstract »|Full Text »|PDF »
Transcription-induced Chromatin Remodeling at the c-myc Gene Involves the Local Exchange of Histone H2A.Z.
S. D. Farris, E. D. Rubio, J. J. Moon, W. M. Gombert, B. H. Nelson, and A. Krumm (2005)
J. Biol. Chem.
280, 25298-25303
|Abstract »|Full Text »|PDF »
Association States of Nucleosome Assembly Protein 1 and Its Complexes with Histones.
K. F. Toth, J. Mazurkiewicz, and K. Rippe (2005)
J. Biol. Chem.
280, 15690-15699
|Abstract »|Full Text »|PDF »
CK2 Phosphorylates SSRP1 and Inhibits Its DNA-binding Activity.
Y. Li, D. M. Keller, J. D. Scott, and H. Lu (2005)
J. Biol. Chem.
280, 11869-11875
|Abstract »|Full Text »|PDF »
Replication-independent core histone dynamics at transcriptionally active loci in vivo.
Domain organization of the yeast histone chaperone FACT: the conserved N-terminal domain of FACT subunit Spt16 mediates recovery from replication stress.
A. F. O'Donnell, N. K. Brewster, J. Kurniawan, L. V. Minard, G. C. Johnston, and R. A. Singer (2004)
Nucleic Acids Res.
32, 5894-5906
|Abstract »|Full Text »|PDF »
Elongation by RNA polymerase II: the short and long of it.
R. J. Sims III, R. Belotserkovskaya, and D. Reinberg (2004)
Genes & Dev.
18, 2437-2468
|Abstract »|Full Text »|PDF »
Using Atomic Force Microscopy to Study Nucleosome Remodeling on Individual Nucleosomal Arrays in Situ.
H. Wang, R. Bash, J. G. Yodh, G. Hager, S. M. Lindsay, and D. Lohr (2004)
Biophys. J.
87, 1964-1971
|Abstract »|Full Text »|PDF »
Visualization of unconstrained negative supercoils of DNA on polytene chromosomes of Drosophila.